Natural Product: NPC328479

Natural Product ID:  NPC328479
Common Name:   5'-(Aminopropylthio)-5'-Deoxy-Adenosine
IUPAC Name:   (2S,3S,4R,5R)-2-(3-aminopropylsulfanylmethyl)-5-(6-aminopurin-9-yl)oxolane-3,4-diol
Synonyms:  
Molecular Formula:   C13H20N6O3S
Standard InCHIKey:  FUSRAALGPJJIRO-QYVSTXNMSA-N
Standard InCHI:  InChI=1S/C13H20N6O3S/c14-2-1-3-23-4-7-9(20)10(21)13(22-7)19-6-18-8-11(15)16-5-17-12(8)19/h5-7,9-10,13,20-21H,1-4,14H2,(H2,15,16,17)/t7-,9-,10-,13-/m1/s1
Canonical SMILES:  NCCCSC[C@H]1O[C@H]([C@@H]([C@@H]1O)O)n1cnc2c1ncnc2N
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO8923 Ariopsis felis Species Ariidae Eukaryota PMID[942371]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT471 Organism Trypanosoma brucei brucei Trypanosoma brucei brucei IC50 > 100000 nM 17954686
NPT471 Organism Trypanosoma brucei brucei Trypanosoma brucei brucei IC50 = 72500 nM 17954686
NPT471 Organism Trypanosoma brucei brucei Trypanosoma brucei brucei IC50 = 15750 nM 17954686
NPT2 Others Unspecified Activity = 46 % 17954686
NPT2 Others Unspecified Activity = 60 % 17954686
NPT2752 Individual Protein DNA (cytosine-5)-methyltransferase 1 Homo sapiens IC50 > 45000 nM 19364644
NPT3537 Individual Protein DNA (cytosine-5)-methyltransferase 3B Homo sapiens IC50 = 17000 nM 19364644
NPT6098 Individual Protein Histone-lysine N-methyltransferase, H3 lysine-79 specific Homo sapiens Ki = 100000 nM 22924785
NPT6098 Individual Protein Histone-lysine N-methyltransferase, H3 lysine-79 specific Homo sapiens Ki = 100000 nM 23879463

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC328479 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9643 High Similarity NPC136349
0.9517 High Similarity NPC195140
0.9329 High Similarity NPC324484
0.9267 High Similarity NPC325906
0.9071 High Similarity NPC317821
0.8819 High Similarity NPC156461
0.8819 High Similarity NPC107374
0.8819 High Similarity NPC21448
0.8811 High Similarity NPC229974
0.8803 High Similarity NPC161659
0.8803 High Similarity NPC209525
0.8759 High Similarity NPC164665
0.8759 High Similarity NPC189068
0.8699 High Similarity NPC269827
0.8699 High Similarity NPC219313
0.8699 High Similarity NPC309832
0.8681 High Similarity NPC314152
0.8601 High Similarity NPC129756
0.8553 High Similarity NPC239737
0.8533 High Similarity NPC472816
0.8467 Intermediate Similarity NPC185991
0.8467 Intermediate Similarity NPC85689
0.8467 Intermediate Similarity NPC211025
0.8421 Intermediate Similarity NPC174802
0.8411 Intermediate Similarity NPC321814
0.8389 Intermediate Similarity NPC121222
0.8355 Intermediate Similarity NPC130586
0.8355 Intermediate Similarity NPC212551
0.8355 Intermediate Similarity NPC164952
0.8355 Intermediate Similarity NPC302778
0.8344 Intermediate Similarity NPC161224
0.8312 Intermediate Similarity NPC316618
0.8312 Intermediate Similarity NPC226245
0.8278 Intermediate Similarity NPC150853
0.8276 Intermediate Similarity NPC33996
0.8247 Intermediate Similarity NPC224076
0.817 Intermediate Similarity NPC207633
0.816 Intermediate Similarity NPC189261
0.8075 Intermediate Similarity NPC290959
0.805 Intermediate Similarity NPC323091
0.8013 Intermediate Similarity NPC52238
0.7962 Intermediate Similarity NPC313754
0.7962 Intermediate Similarity NPC54320
0.7962 Intermediate Similarity NPC311197
0.777 Intermediate Similarity NPC320818
0.7665 Intermediate Similarity NPC326529
0.7636 Intermediate Similarity NPC326082
0.7625 Intermediate Similarity NPC93365
0.7622 Intermediate Similarity NPC261595
0.7619 Intermediate Similarity NPC319100
0.7619 Intermediate Similarity NPC324198
0.7576 Intermediate Similarity NPC321458
0.7576 Intermediate Similarity NPC324033
0.7456 Intermediate Similarity NPC313897
0.7351 Intermediate Similarity NPC262926
0.7315 Intermediate Similarity NPC104011
0.7303 Intermediate Similarity NPC61198
0.7257 Intermediate Similarity NPC24589
0.7232 Intermediate Similarity NPC282458
0.7232 Intermediate Similarity NPC78941
0.716 Intermediate Similarity NPC321052
0.7134 Intermediate Similarity NPC315642
0.7134 Intermediate Similarity NPC74306
0.7105 Intermediate Similarity NPC324009
0.7097 Intermediate Similarity NPC30326
0.707 Intermediate Similarity NPC186619
0.7059 Intermediate Similarity NPC319221
0.7044 Intermediate Similarity NPC274384
0.7044 Intermediate Similarity NPC317746
0.7044 Intermediate Similarity NPC89147
0.7039 Intermediate Similarity NPC313514
0.7 Intermediate Similarity NPC232408
0.7 Intermediate Similarity NPC64705
0.6981 Remote Similarity NPC251233
0.6981 Remote Similarity NPC211820
0.6981 Remote Similarity NPC318590
0.6937 Remote Similarity NPC177169
0.6883 Remote Similarity NPC57279
0.6863 Remote Similarity NPC246193
0.6829 Remote Similarity NPC326694
0.6772 Remote Similarity NPC276373
0.6757 Remote Similarity NPC327579
0.6737 Remote Similarity NPC5802
0.6705 Remote Similarity NPC33382
0.6702 Remote Similarity NPC157821
0.6667 Remote Similarity NPC168702
0.6667 Remote Similarity NPC476564
0.6667 Remote Similarity NPC125659
0.6628 Remote Similarity NPC14590
0.6591 Remote Similarity NPC222174
0.6571 Remote Similarity NPC174114
0.6571 Remote Similarity NPC87981
0.6536 Remote Similarity NPC248007
0.6474 Remote Similarity NPC321393
0.6438 Remote Similarity NPC312187
0.6438 Remote Similarity NPC4837
0.6433 Remote Similarity NPC287876
0.6369 Remote Similarity NPC14330
0.634 Remote Similarity NPC139776
0.6324 Remote Similarity NPC250178
0.6319 Remote Similarity NPC18335
0.6279 Remote Similarity NPC472834
0.6184 Remote Similarity NPC189314
0.6103 Remote Similarity NPC160666
0.6093 Remote Similarity NPC313547
0.6078 Remote Similarity NPC68938
0.6071 Remote Similarity NPC217656
0.6051 Remote Similarity NPC109322
0.6038 Remote Similarity NPC107160
0.603 Remote Similarity NPC103388
0.6 Remote Similarity NPC164845
0.5953 Remote Similarity NPC21461
0.5941 Remote Similarity NPC89139
0.5939 Remote Similarity NPC150447
0.593 Remote Similarity NPC244700
0.5928 Remote Similarity NPC296437
0.5893 Remote Similarity NPC470266
0.5886 Remote Similarity NPC5707
0.5872 Remote Similarity NPC158055
0.5824 Remote Similarity NPC476528
0.5824 Remote Similarity NPC476433
0.5822 Remote Similarity NPC324815
0.5789 Remote Similarity NPC476013
0.5789 Remote Similarity NPC476522
0.5789 Remote Similarity NPC476520
0.5789 Remote Similarity NPC474986
0.5787 Remote Similarity NPC472833
0.5781 Remote Similarity NPC265111
0.578 Remote Similarity NPC476408
0.5756 Remote Similarity NPC476521
0.5752 Remote Similarity NPC315126
0.5752 Remote Similarity NPC314774
0.5743 Remote Similarity NPC476561
0.5737 Remote Similarity NPC473585
0.5714 Remote Similarity NPC180493
0.5691 Remote Similarity NPC18308
0.5691 Remote Similarity NPC472832
0.5667 Remote Similarity NPC476099
0.5629 Remote Similarity NPC119133
0.5608 Remote Similarity NPC293163
0.56 Remote Similarity NPC59314

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC328479 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9643 High Similarity NPD548 Clinical (unspecified phase)
0.9267 High Similarity NPD1776 Approved
0.9267 High Similarity NPD1777 Approved
0.8819 High Similarity NPD249 Approved
0.8819 High Similarity NPD250 Approved
0.8725 High Similarity NPD1369 Phase 2
0.8725 High Similarity NPD1750 Clinical (unspecified phase)
0.8699 High Similarity NPD186 Discovery
0.8699 High Similarity NPD195 Approved
0.8681 High Similarity NPD185 Approved
0.8562 High Similarity NPD166 Approved
0.8553 High Similarity NPD2646 Discontinued
0.8553 High Similarity NPD2624 Phase 2
0.8553 High Similarity NPD1732 Phase 3
0.8542 High Similarity NPD193 Suspended
0.8477 Intermediate Similarity NPD3107 Discontinued
0.8467 Intermediate Similarity NPD283 Approved
0.8447 Intermediate Similarity NPD1412 Clinical (unspecified phase)
0.8421 Intermediate Similarity NPD339 Approved
0.8355 Intermediate Similarity NPD242 Approved
0.8355 Intermediate Similarity NPD338 Approved
0.8247 Intermediate Similarity NPD169 Phase 2
0.8214 Intermediate Similarity NPD2631 Clinical (unspecified phase)
0.8214 Intermediate Similarity NPD2632 Approved
0.8214 Intermediate Similarity NPD2630 Approved
0.8169 Intermediate Similarity NPD248 Discontinued
0.8095 Intermediate Similarity NPD6417 Clinical (unspecified phase)
0.8028 Intermediate Similarity NPD870 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD214 Approved
0.8 Intermediate Similarity NPD213 Clinical (unspecified phase)
0.7962 Intermediate Similarity NPD218 Approved
0.7962 Intermediate Similarity NPD217 Approved
0.7962 Intermediate Similarity NPD220 Clinical (unspecified phase)
0.7962 Intermediate Similarity NPD216 Approved
0.7962 Intermediate Similarity NPD219 Phase 3
0.7901 Intermediate Similarity NPD2647 Phase 3
0.773 Intermediate Similarity NPD7988 Suspended
0.7665 Intermediate Similarity NPD5666 Phase 2
0.7625 Intermediate Similarity NPD546 Clinical (unspecified phase)
0.7622 Intermediate Similarity NPD247 Clinical (unspecified phase)
0.7619 Intermediate Similarity NPD4171 Clinical (unspecified phase)
0.7485 Intermediate Similarity NPD4716 Approved
0.7473 Intermediate Similarity NPD4495 Phase 1
0.7442 Intermediate Similarity NPD4744 Clinical (unspecified phase)
0.7439 Intermediate Similarity NPD3083 Approved
0.7432 Intermediate Similarity NPD9632 Phase 3
0.7378 Intermediate Similarity NPD516 Clinical (unspecified phase)
0.7372 Intermediate Similarity NPD7158 Phase 1
0.7365 Intermediate Similarity NPD9633 Phase 3
0.7356 Intermediate Similarity NPD1692 Approved
0.7303 Intermediate Similarity NPD252 Clinical (unspecified phase)
0.7279 Intermediate Similarity NPD9408 Phase 3
0.7273 Intermediate Similarity NPD5684 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD5682 Phase 3
0.7273 Intermediate Similarity NPD5683 Clinical (unspecified phase)
0.725 Intermediate Similarity NPD3708 Phase 2
0.7237 Intermediate Similarity NPD194 Clinical (unspecified phase)
0.716 Intermediate Similarity NPD231 Clinical (unspecified phase)
0.7134 Intermediate Similarity NPD582 Approved
0.7115 Intermediate Similarity NPD549 Approved
0.7095 Intermediate Similarity NPD207 Discontinued
0.7055 Intermediate Similarity NPD536 Clinical (unspecified phase)
0.7039 Intermediate Similarity NPD7138 Phase 2
0.6899 Remote Similarity NPD3695 Approved
0.6899 Remote Similarity NPD3696 Approved
0.6839 Remote Similarity NPD209 Clinical (unspecified phase)
0.6829 Remote Similarity NPD3085 Phase 1
0.6803 Remote Similarity NPD9606 Approved
0.6788 Remote Similarity NPD3086 Phase 3
0.6757 Remote Similarity NPD9607 Approved
0.6754 Remote Similarity NPD2965 Clinical (unspecified phase)
0.6746 Remote Similarity NPD4074 Clinical (unspecified phase)
0.6719 Remote Similarity NPD2877 Clinical (unspecified phase)
0.6719 Remote Similarity NPD2876 Phase 3
0.6688 Remote Similarity NPD9484 Clinical (unspecified phase)
0.6687 Remote Similarity NPD1730 Discontinued
0.6685 Remote Similarity NPD4054 Clinical (unspecified phase)
0.6649 Remote Similarity NPD2824 Phase 2
0.6626 Remote Similarity NPD171 Discontinued
0.6624 Remote Similarity NPD1058 Discontinued
0.6599 Remote Similarity NPD9374 Approved
0.6575 Remote Similarity NPD9373 Approved
0.6564 Remote Similarity NPD4240 Approved
0.6545 Remote Similarity NPD7531 Clinical (unspecified phase)
0.6543 Remote Similarity NPD1431 Approved
0.6543 Remote Similarity NPD1430 Approved
0.6536 Remote Similarity NPD9084 Phase 2
0.6533 Remote Similarity NPD307 Approved
0.651 Remote Similarity NPD4458 Phase 2
0.651 Remote Similarity NPD4459 Clinical (unspecified phase)
0.6494 Remote Similarity NPD527 Clinical (unspecified phase)
0.6464 Remote Similarity NPD1046 Clinical (unspecified phase)
0.645 Remote Similarity NPD9605 Phase 3
0.6433 Remote Similarity NPD8829 Clinical (unspecified phase)
0.6432 Remote Similarity NPD2903 Clinical (unspecified phase)
0.6432 Remote Similarity NPD2902 Phase 2
0.6415 Remote Similarity NPD9083 Clinical (unspecified phase)
0.6392 Remote Similarity NPD282 Approved
0.6375 Remote Similarity NPD1119 Phase 2
0.6364 Remote Similarity NPD2152 Clinical (unspecified phase)
0.6364 Remote Similarity NPD798 Discontinued
0.6364 Remote Similarity NPD9704 Approved
0.6319 Remote Similarity NPD8836 Approved
0.6267 Remote Similarity NPD9584 Phase 2
0.6258 Remote Similarity NPD1808 Phase 1
0.6258 Remote Similarity NPD799 Phase 1
0.6257 Remote Similarity NPD1063 Phase 2
0.625 Remote Similarity NPD545 Clinical (unspecified phase)
0.625 Remote Similarity NPD547 Clinical (unspecified phase)
0.6235 Remote Similarity NPD1121 Approved
0.6235 Remote Similarity NPD1120 Approved
0.6213 Remote Similarity NPD775 Approved
0.6203 Remote Similarity NPD1127 Approved
0.6203 Remote Similarity NPD1128 Approved
0.6199 Remote Similarity NPD353 Discontinued
0.6184 Remote Similarity NPD8831 Approved
0.6184 Remote Similarity NPD8833 Approved
0.6178 Remote Similarity NPD281 Approved
0.6158 Remote Similarity NPD2593 Clinical (unspecified phase)
0.615 Remote Similarity NPD5627 Approved
0.6145 Remote Similarity NPD2253 Discontinued
0.6142 Remote Similarity NPD5486 Discontinued
0.6122 Remote Similarity NPD1816 Clinical (unspecified phase)
0.6098 Remote Similarity NPD6112 Approved
0.6084 Remote Similarity NPD1118 Discontinued
0.6081 Remote Similarity NPD5171 Clinical (unspecified phase)
0.6068 Remote Similarity NPD5080 Phase 2
0.6067 Remote Similarity NPD9375 Discontinued
0.6065 Remote Similarity NPD9409 Discontinued
0.605 Remote Similarity NPD5458 Discontinued
0.6029 Remote Similarity NPD6381 Phase 2
0.6019 Remote Similarity NPD5079 Phase 2
0.5978 Remote Similarity NPD5768 Phase 2
0.5945 Remote Similarity NPD7502 Clinical (unspecified phase)
0.5939 Remote Similarity NPD535 Approved
0.5938 Remote Similarity NPD515 Phase 1
0.592 Remote Similarity NPD7842 Phase 2
0.5917 Remote Similarity NPD1117 Clinical (unspecified phase)
0.5886 Remote Similarity NPD8830 Phase 3
0.5878 Remote Similarity NPD9626 Clinical (unspecified phase)
0.5876 Remote Similarity NPD1017 Clinical (unspecified phase)
0.5872 Remote Similarity NPD6840 Approved
0.5856 Remote Similarity NPD1122 Clinical (unspecified phase)
0.5833 Remote Similarity NPD9360 Approved
0.5811 Remote Similarity NPD341 Approved
0.5811 Remote Similarity NPD340 Approved
0.5802 Remote Similarity NPD1354 Approved
0.5802 Remote Similarity NPD1356 Approved
0.5802 Remote Similarity NPD1355 Clinical (unspecified phase)
0.5787 Remote Similarity NPD6023 Discontinued
0.5784 Remote Similarity NPD796 Phase 2
0.5769 Remote Similarity NPD1368 Approved
0.5752 Remote Similarity NPD8250 Phase 2
0.5742 Remote Similarity NPD757 Phase 3
0.5741 Remote Similarity NPD1775 Approved
0.5741 Remote Similarity NPD9696 Approved
0.5741 Remote Similarity NPD1085 Approved
0.5723 Remote Similarity NPD2221 Clinical (unspecified phase)
0.5714 Remote Similarity NPD9544 Approved
0.5714 Remote Similarity NPD78 Approved
0.5708 Remote Similarity NPD4555 Clinical (unspecified phase)
0.567 Remote Similarity NPD3913 Clinical (unspecified phase)
0.5648 Remote Similarity NPD2456 Phase 2
0.5648 Remote Similarity NPD2457 Phase 2
0.5637 Remote Similarity NPD4713 Clinical (unspecified phase)
0.5637 Remote Similarity NPD4714 Approved
0.5637 Remote Similarity NPD34 Approved
0.5637 Remote Similarity NPD4715 Clinical (unspecified phase)
0.5633 Remote Similarity NPD237 Clinical (unspecified phase)
0.5633 Remote Similarity NPD578 Discontinued
0.5629 Remote Similarity NPD9291 Approved
0.5617 Remote Similarity NPD579 Clinical (unspecified phase)
0.5608 Remote Similarity NPD3108 Clinical (unspecified phase)
0.5607 Remote Similarity NPD5342 Clinical (unspecified phase)
0.56 Remote Similarity NPD8837 Clinical (unspecified phase)

Structure

External Identifiers

PubChem CID   171251
ChEMBL   CHEMBL538693
ZINC  

Physicochemical Properties

Molecular Weight:  340.13
ALogP:  -2.2429
MLogP:  1.79
XLogP:  -0.976
# Rotatable Bonds:  10
Polar Surface Area:  170.63
# H-Bond Aceptor:  9
# H-Bond Donor:  4
# Rings:  3
# Heavy Atoms:  23

Download Data

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Structure MOL file  
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Biological Activities  
Similar NPs/Drugs