Natural Product: NPC326529

Natural Product ID:  NPC326529
Common Name:   Ap3A
IUPAC Name:   bis[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] hydrogen phosphate
Synonyms:  
Molecular Formula:   C20H27N10O16P3
Standard InCHIKey:  QCICUPZZLIQAPA-XPWFQUROSA-N
Standard InCHI:  InChI=1S/C20H27N10O16P3/c21-15-9-17(25-3-23-15)29(5-27-9)19-13(33)11(31)7(43-19)1-41-47(35,36)45-49(39,40)46-48(37,38)42-2-8-12(32)14(34)20(44-8)30-6-28-10-16(22)24-4-26-18(10)30/h3-8,11-14,19-20,31-34H,1-2H2,(H,35,36)(H,37,38)(H,39,40)(H2,21,23,25)(H2,22,24,26)/t7-,8-,11-,12-,13-,14-,19-,20-/m1/s1
Canonical SMILES:  O[C@@H]1[C@@H](COP(=O)(OP(=O)(OP(=O)(OC[C@H]2O[C@H]([C@@H]([C@@H]2O)O)n2cnc3c2ncnc3N)O)O)O)O[C@H]([C@@H]1O)n1cnc2c1ncnc2N
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO1797 Homo sapiens Species Hominidae Eukaryota blood PMID[12738682]
NPO20338 Mus musculus Species Muridae Eukaryota PMID[19425150]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT3831 Individual Protein Purinergic receptor P2Y1 Rattus norvegicus EC50 = 60 nM 16539385
NPT2 Others Unspecified Activity = 88.7 % 21757356
NPT2 Others Unspecified Activity = 95 % 21757356
NPT2 Others Unspecified Ratio = 0.15 23726029

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC326529 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9936 High Similarity NPC324198
0.9936 High Similarity NPC319100
0.9744 High Similarity NPC326082
0.9045 High Similarity NPC226245
0.9038 High Similarity NPC174802
0.8974 High Similarity NPC130586
0.8974 High Similarity NPC212551
0.8974 High Similarity NPC164952
0.8974 High Similarity NPC302778
0.8882 High Similarity NPC323091
0.8861 High Similarity NPC224076
0.8846 High Similarity NPC161224
0.8846 High Similarity NPC185991
0.8846 High Similarity NPC85689
0.8846 High Similarity NPC211025
0.879 High Similarity NPC321814
0.8688 High Similarity NPC316618
0.8654 High Similarity NPC121222
0.8462 Intermediate Similarity NPC21448
0.8462 Intermediate Similarity NPC156461
0.8462 Intermediate Similarity NPC107374
0.8412 Intermediate Similarity NPC189261
0.8408 Intermediate Similarity NPC164665
0.8408 Intermediate Similarity NPC189068
0.8354 Intermediate Similarity NPC219313
0.8354 Intermediate Similarity NPC309832
0.8354 Intermediate Similarity NPC269827
0.8333 Intermediate Similarity NPC229974
0.8205 Intermediate Similarity NPC161659
0.8205 Intermediate Similarity NPC209525
0.8166 Intermediate Similarity NPC321458
0.8166 Intermediate Similarity NPC324033
0.8144 Intermediate Similarity NPC14590
0.8107 Intermediate Similarity NPC261595
0.8101 Intermediate Similarity NPC314152
0.8098 Intermediate Similarity NPC472816
0.8089 Intermediate Similarity NPC317821
0.8012 Intermediate Similarity NPC239737
0.7879 Intermediate Similarity NPC207633
0.7799 Intermediate Similarity NPC129756
0.7758 Intermediate Similarity NPC150853
0.7697 Intermediate Similarity NPC136349
0.7692 Intermediate Similarity NPC311197
0.7692 Intermediate Similarity NPC54320
0.7692 Intermediate Similarity NPC313754
0.7665 Intermediate Similarity NPC328479
0.7647 Intermediate Similarity NPC195140
0.7633 Intermediate Similarity NPC52238
0.7625 Intermediate Similarity NPC30326
0.7622 Intermediate Similarity NPC64705
0.7622 Intermediate Similarity NPC232408
0.7561 Intermediate Similarity NPC317746
0.7561 Intermediate Similarity NPC274384
0.7561 Intermediate Similarity NPC89147
0.7561 Intermediate Similarity NPC177169
0.7516 Intermediate Similarity NPC33996
0.75 Intermediate Similarity NPC320818
0.75 Intermediate Similarity NPC251233
0.75 Intermediate Similarity NPC211820
0.75 Intermediate Similarity NPC318590
0.7378 Intermediate Similarity NPC186619
0.7337 Intermediate Similarity NPC326694
0.7333 Intermediate Similarity NPC313897
0.733 Intermediate Similarity NPC324484
0.7303 Intermediate Similarity NPC290959
0.7288 Intermediate Similarity NPC325906
0.7283 Intermediate Similarity NPC93365
0.7246 Intermediate Similarity NPC107160
0.7243 Intermediate Similarity NPC24589
0.7219 Intermediate Similarity NPC282458
0.7219 Intermediate Similarity NPC78941
0.7073 Intermediate Similarity NPC61198
0.7062 Intermediate Similarity NPC21461
0.7012 Intermediate Similarity NPC262926
0.6954 Remote Similarity NPC321052
0.6947 Remote Similarity NPC313514
0.6848 Remote Similarity NPC319221
0.6788 Remote Similarity NPC324009
0.6784 Remote Similarity NPC276373
0.675 Remote Similarity NPC5802
0.6725 Remote Similarity NPC315642
0.6725 Remote Similarity NPC74306
0.6716 Remote Similarity NPC157821
0.6651 Remote Similarity NPC158055
0.6541 Remote Similarity NPC33382
0.6505 Remote Similarity NPC168702
0.6505 Remote Similarity NPC125659
0.6436 Remote Similarity NPC222174
0.6355 Remote Similarity NPC250178
0.6324 Remote Similarity NPC321393
0.6159 Remote Similarity NPC327579
0.6071 Remote Similarity NPC160666
0.6012 Remote Similarity NPC57279
0.5988 Remote Similarity NPC104011
0.5988 Remote Similarity NPC246193
0.5949 Remote Similarity NPC476564
0.5882 Remote Similarity NPC472834
0.5882 Remote Similarity NPC248007
0.586 Remote Similarity NPC87981
0.586 Remote Similarity NPC174114
0.5849 Remote Similarity NPC103388
0.5767 Remote Similarity NPC4837
0.5767 Remote Similarity NPC312187
0.5738 Remote Similarity NPC324815
0.5729 Remote Similarity NPC164845
0.5714 Remote Similarity NPC287876
0.5706 Remote Similarity NPC139776
0.5672 Remote Similarity NPC315126
0.5672 Remote Similarity NPC314774
0.5657 Remote Similarity NPC14330

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC326529 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9936 High Similarity NPD4171 Clinical (unspecified phase)
0.9038 High Similarity NPD339 Approved
0.8974 High Similarity NPD338 Approved
0.8861 High Similarity NPD169 Phase 2
0.8846 High Similarity NPD283 Approved
0.8734 High Similarity NPD242 Approved
0.8538 High Similarity NPD4744 Clinical (unspecified phase)
0.848 Intermediate Similarity NPD4716 Approved
0.8462 Intermediate Similarity NPD249 Approved
0.8462 Intermediate Similarity NPD250 Approved
0.8385 Intermediate Similarity NPD1369 Phase 2
0.8354 Intermediate Similarity NPD195 Approved
0.8354 Intermediate Similarity NPD186 Discovery
0.8272 Intermediate Similarity NPD1750 Clinical (unspecified phase)
0.8272 Intermediate Similarity NPD3107 Discontinued
0.8253 Intermediate Similarity NPD3083 Approved
0.8232 Intermediate Similarity NPD2624 Phase 2
0.8232 Intermediate Similarity NPD2646 Discontinued
0.8214 Intermediate Similarity NPD7988 Suspended
0.815 Intermediate Similarity NPD1412 Clinical (unspecified phase)
0.8121 Intermediate Similarity NPD1732 Phase 3
0.8107 Intermediate Similarity NPD247 Clinical (unspecified phase)
0.8101 Intermediate Similarity NPD185 Approved
0.8072 Intermediate Similarity NPD4074 Clinical (unspecified phase)
0.8034 Intermediate Similarity NPD6417 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD166 Approved
0.7975 Intermediate Similarity NPD193 Suspended
0.7849 Intermediate Similarity NPD2647 Phase 3
0.7845 Intermediate Similarity NPD2632 Approved
0.7845 Intermediate Similarity NPD2630 Approved
0.7845 Intermediate Similarity NPD2631 Clinical (unspecified phase)
0.7829 Intermediate Similarity NPD5666 Phase 2
0.7758 Intermediate Similarity NPD3085 Phase 1
0.7722 Intermediate Similarity NPD1692 Approved
0.7711 Intermediate Similarity NPD3086 Phase 3
0.7697 Intermediate Similarity NPD548 Clinical (unspecified phase)
0.7692 Intermediate Similarity NPD218 Approved
0.7692 Intermediate Similarity NPD216 Approved
0.7692 Intermediate Similarity NPD217 Approved
0.7692 Intermediate Similarity NPD220 Clinical (unspecified phase)
0.7692 Intermediate Similarity NPD219 Phase 3
0.7515 Intermediate Similarity NPD213 Clinical (unspecified phase)
0.7515 Intermediate Similarity NPD214 Approved
0.7514 Intermediate Similarity NPD4054 Clinical (unspecified phase)
0.7455 Intermediate Similarity NPD7158 Phase 1
0.7296 Intermediate Similarity NPD248 Discontinued
0.7288 Intermediate Similarity NPD1777 Approved
0.7288 Intermediate Similarity NPD1776 Approved
0.7283 Intermediate Similarity NPD546 Clinical (unspecified phase)
0.7258 Intermediate Similarity NPD5682 Phase 3
0.7258 Intermediate Similarity NPD5684 Clinical (unspecified phase)
0.7258 Intermediate Similarity NPD5683 Clinical (unspecified phase)
0.7233 Intermediate Similarity NPD9633 Phase 3
0.7188 Intermediate Similarity NPD9632 Phase 3
0.717 Intermediate Similarity NPD870 Clinical (unspecified phase)
0.7152 Intermediate Similarity NPD9408 Phase 3
0.7108 Intermediate Similarity NPD3696 Approved
0.7108 Intermediate Similarity NPD3695 Approved
0.7073 Intermediate Similarity NPD252 Clinical (unspecified phase)
0.6966 Remote Similarity NPD516 Clinical (unspecified phase)
0.6947 Remote Similarity NPD7138 Phase 2
0.6905 Remote Similarity NPD549 Approved
0.6895 Remote Similarity NPD1063 Phase 2
0.6893 Remote Similarity NPD5080 Phase 2
0.6845 Remote Similarity NPD5079 Phase 2
0.6839 Remote Similarity NPD3708 Phase 2
0.6807 Remote Similarity NPD194 Clinical (unspecified phase)
0.6784 Remote Similarity NPD4240 Approved
0.6766 Remote Similarity NPD2965 Clinical (unspecified phase)
0.6761 Remote Similarity NPD536 Clinical (unspecified phase)
0.6733 Remote Similarity NPD2876 Phase 3
0.6733 Remote Similarity NPD2877 Clinical (unspecified phase)
0.6725 Remote Similarity NPD582 Approved
0.6667 Remote Similarity NPD2824 Phase 2
0.6651 Remote Similarity NPD6840 Approved
0.661 Remote Similarity NPD353 Discontinued
0.6579 Remote Similarity NPD1046 Clinical (unspecified phase)
0.6552 Remote Similarity NPD171 Discontinued
0.6538 Remote Similarity NPD2903 Clinical (unspecified phase)
0.6538 Remote Similarity NPD2902 Phase 2
0.6522 Remote Similarity NPD4495 Phase 1
0.6389 Remote Similarity NPD231 Clinical (unspecified phase)
0.6298 Remote Similarity NPD9605 Phase 3
0.6205 Remote Similarity NPD7502 Clinical (unspecified phase)
0.6196 Remote Similarity NPD9606 Approved
0.6159 Remote Similarity NPD9607 Approved
0.6145 Remote Similarity NPD1730 Discontinued
0.6078 Remote Similarity NPD8250 Phase 2
0.6069 Remote Similarity NPD209 Clinical (unspecified phase)
0.6058 Remote Similarity NPD4458 Phase 2
0.6058 Remote Similarity NPD4459 Clinical (unspecified phase)
0.6057 Remote Similarity NPD6112 Approved
0.6024 Remote Similarity NPD9409 Discontinued
0.6023 Remote Similarity NPD799 Phase 1
0.6012 Remote Similarity NPD545 Clinical (unspecified phase)
0.6 Remote Similarity NPD527 Clinical (unspecified phase)
0.599 Remote Similarity NPD2152 Clinical (unspecified phase)
0.5947 Remote Similarity NPD2593 Clinical (unspecified phase)
0.5943 Remote Similarity NPD1119 Phase 2
0.5922 Remote Similarity NPD2253 Discontinued
0.592 Remote Similarity NPD547 Clinical (unspecified phase)
0.5915 Remote Similarity NPD9374 Approved
0.589 Remote Similarity NPD9373 Approved
0.5886 Remote Similarity NPD1058 Discontinued
0.5882 Remote Similarity NPD9084 Phase 2
0.5877 Remote Similarity NPD5486 Discontinued
0.5868 Remote Similarity NPD307 Approved
0.5862 Remote Similarity NPD282 Approved
0.5856 Remote Similarity NPD6381 Phase 2
0.5847 Remote Similarity NPD7531 Clinical (unspecified phase)
0.5833 Remote Similarity NPD1430 Approved
0.5833 Remote Similarity NPD1431 Approved
0.5815 Remote Similarity NPD775 Approved
0.5794 Remote Similarity NPD5458 Discontinued
0.5775 Remote Similarity NPD34 Approved
0.5775 Remote Similarity NPD4714 Approved
0.5775 Remote Similarity NPD4713 Clinical (unspecified phase)
0.5775 Remote Similarity NPD4715 Clinical (unspecified phase)
0.5767 Remote Similarity NPD2452 Phase 2
0.5767 Remote Similarity NPD2450 Phase 2
0.5767 Remote Similarity NPD2453 Phase 2
0.5767 Remote Similarity NPD2451 Phase 2
0.5756 Remote Similarity NPD207 Discontinued
0.5714 Remote Similarity NPD8829 Clinical (unspecified phase)
0.5708 Remote Similarity NPD4599 Clinical (unspecified phase)
0.5706 Remote Similarity NPD9083 Clinical (unspecified phase)
0.569 Remote Similarity NPD1127 Approved
0.569 Remote Similarity NPD1128 Approved
0.5667 Remote Similarity NPD1808 Phase 1
0.5649 Remote Similarity NPD6351 Discovery
0.5629 Remote Similarity NPD9584 Phase 2
0.5628 Remote Similarity NPD4089 Clinical (unspecified phase)
0.5625 Remote Similarity NPD4555 Clinical (unspecified phase)
0.5619 Remote Similarity NPD6036 Suspended
0.5604 Remote Similarity NPD1118 Discontinued
0.5602 Remote Similarity NPD1017 Clinical (unspecified phase)

Structure

External Identifiers

PubChem CID   165381
ChEMBL   CHEMBL407938
ZINC  

Physicochemical Properties

Molecular Weight:  756.08
ALogP:  -4.4446
MLogP:  0.47
XLogP:  -7.145
# Rotatable Bonds:  21
Polar Surface Area:  416.87
# H-Bond Aceptor:  26
# H-Bond Donor:  9
# Rings:  6
# Heavy Atoms:  49

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs