Natural Product: NPC320359

Natural Product ID:  NPC320359
Common Name:   Cratoxyarborenone A
IUPAC Name:   8-[(2E)-3,7-dimethylocta-2,6-dienyl]-1,3,5,7-tetrahydroxy-2-(3-methylbut-2-enyl)xanthen-9-one
Synonyms:  
Molecular Formula:   C28H32O6
Standard InCHIKey:  ZAXOSWZCOUYSSE-LICLKQGHSA-N
Standard InCHI:  InChI=1S/C28H32O6/c1-15(2)7-6-8-17(5)10-12-18-20(29)13-22(31)28-24(18)27(33)25-23(34-28)14-21(30)19(26(25)32)11-9-16(3)4/h7,9-10,13-14,29-32H,6,8,11-12H2,1-5H3/b17-10+
Canonical SMILES:  C/C(=CCc1c(O)cc(c2c1c(=O)c1c(o2)cc(c(c1O)CC=C(C)C)O)O)/CCC=C(C)C
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO9520 Cratoxylum sumatranum Species Hypericaceae Eukaryota Leaves PMID[11908969]
NPO9520 Cratoxylum sumatranum Species Hypericaceae Eukaryota Twigs PMID[11908969]
NPO9520 Cratoxylum sumatranum Species Hypericaceae Eukaryota Stems PMID[11908969]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT91 Cell Line KB Homo sapiens EC50 = 4.3 ug/ml 11908969

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC320359 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9934 High Similarity NPC278052
0.9934 High Similarity NPC100123
0.9934 High Similarity NPC40491
0.9868 High Similarity NPC14353
0.9868 High Similarity NPC228785
0.9868 High Similarity NPC236796
0.9868 High Similarity NPC56085
0.9805 High Similarity NPC236132
0.9805 High Similarity NPC7483
0.9804 High Similarity NPC61010
0.9801 High Similarity NPC274730
0.9801 High Similarity NPC142339
0.974 High Similarity NPC25152
0.9739 High Similarity NPC475886
0.9739 High Similarity NPC119224
0.9739 High Similarity NPC474287
0.9737 High Similarity NPC241904
0.9737 High Similarity NPC165977
0.9737 High Similarity NPC300727
0.9737 High Similarity NPC217677
0.9679 High Similarity NPC39091
0.9677 High Similarity NPC23298
0.9677 High Similarity NPC248638
0.9677 High Similarity NPC152659
0.9677 High Similarity NPC189473
0.9677 High Similarity NPC220313
0.9677 High Similarity NPC236521
0.9675 High Similarity NPC475883
0.9675 High Similarity NPC474187
0.9675 High Similarity NPC474186
0.9675 High Similarity NPC474351
0.9673 High Similarity NPC476242
0.9671 High Similarity NPC68093
0.9671 High Similarity NPC138243
0.9671 High Similarity NPC191146
0.9669 High Similarity NPC89474
0.9615 High Similarity NPC326520
0.9615 High Similarity NPC472450
0.9615 High Similarity NPC239752
0.9615 High Similarity NPC275780
0.961 High Similarity NPC235018
0.961 High Similarity NPC45146
0.961 High Similarity NPC200746
0.9608 High Similarity NPC262286
0.9608 High Similarity NPC36852
0.9608 High Similarity NPC136674
0.9608 High Similarity NPC78225
0.9554 High Similarity NPC472449
0.9554 High Similarity NPC37870
0.9554 High Similarity NPC170245
0.9551 High Similarity NPC146134
0.9551 High Similarity NPC270837
0.9548 High Similarity NPC32694
0.9545 High Similarity NPC235448
0.9536 High Similarity NPC202157
0.9494 High Similarity NPC477154
0.9494 High Similarity NPC6588
0.9494 High Similarity NPC117854
0.9487 High Similarity NPC229632
0.9487 High Similarity NPC470694
0.9487 High Similarity NPC201800
0.9487 High Similarity NPC329760
0.9487 High Similarity NPC294965
0.9484 High Similarity NPC36217
0.9484 High Similarity NPC204290
0.9484 High Similarity NPC471973
0.9484 High Similarity NPC139036
0.9484 High Similarity NPC80375
0.9481 High Similarity NPC223787
0.9481 High Similarity NPC469584
0.9477 High Similarity NPC113906
0.9474 High Similarity NPC249570
0.947 High Similarity NPC151473
0.9427 High Similarity NPC41301
0.9427 High Similarity NPC207690
0.9427 High Similarity NPC197168
0.9427 High Similarity NPC475985
0.9427 High Similarity NPC474350
0.9423 High Similarity NPC29876
0.9423 High Similarity NPC167678
0.9423 High Similarity NPC266314
0.9423 High Similarity NPC278427
0.9423 High Similarity NPC66288
0.9419 High Similarity NPC474290
0.9419 High Similarity NPC210459
0.9419 High Similarity NPC95936
0.9419 High Similarity NPC185258
0.9419 High Similarity NPC172770
0.9419 High Similarity NPC250214
0.9419 High Similarity NPC329091
0.9416 High Similarity NPC209614
0.9416 High Similarity NPC472626
0.9416 High Similarity NPC472907
0.9416 High Similarity NPC475799
0.9416 High Similarity NPC13779
0.9416 High Similarity NPC470328
0.9412 High Similarity NPC227337
0.9412 High Similarity NPC273462
0.9412 High Similarity NPC476631
0.9412 High Similarity NPC49402
0.9412 High Similarity NPC70433
0.9412 High Similarity NPC33051
0.9371 High Similarity NPC126204
0.9367 High Similarity NPC293319
0.9367 High Similarity NPC473286
0.9367 High Similarity NPC475888
0.9367 High Similarity NPC25361
0.9363 High Similarity NPC211107
0.9363 High Similarity NPC52204
0.9363 High Similarity NPC472448
0.9363 High Similarity NPC83922
0.9359 High Similarity NPC476980
0.9359 High Similarity NPC321399
0.9359 High Similarity NPC246478
0.9359 High Similarity NPC299436
0.9355 High Similarity NPC475267
0.9355 High Similarity NPC79053
0.9355 High Similarity NPC472910
0.9355 High Similarity NPC48208
0.9355 High Similarity NPC96167
0.9355 High Similarity NPC474836
0.9355 High Similarity NPC472914
0.9355 High Similarity NPC245758
0.9355 High Similarity NPC162869
0.9355 High Similarity NPC472911
0.9355 High Similarity NPC156057
0.9355 High Similarity NPC161960
0.9355 High Similarity NPC304008
0.9355 High Similarity NPC472913
0.9355 High Similarity NPC187745
0.9355 High Similarity NPC273843
0.9355 High Similarity NPC222814
0.9355 High Similarity NPC472963
0.9355 High Similarity NPC474208
0.9351 High Similarity NPC477503
0.9351 High Similarity NPC117992
0.9351 High Similarity NPC168247
0.9351 High Similarity NPC45849
0.9351 High Similarity NPC200761
0.9351 High Similarity NPC470327
0.9351 High Similarity NPC152951
0.9351 High Similarity NPC57674
0.9351 High Similarity NPC230149
0.9346 High Similarity NPC101996
0.9346 High Similarity NPC199100
0.9346 High Similarity NPC471982
0.9346 High Similarity NPC180234
0.9346 High Similarity NPC120537
0.9342 High Similarity NPC227122
0.9342 High Similarity NPC61620
0.9304 High Similarity NPC186686
0.9304 High Similarity NPC303460
0.9304 High Similarity NPC474240
0.9304 High Similarity NPC306321
0.9299 High Similarity NPC258331
0.9299 High Similarity NPC472275
0.9299 High Similarity NPC259456
0.9295 High Similarity NPC85121
0.929 High Similarity NPC472916
0.929 High Similarity NPC235165
0.929 High Similarity NPC115853
0.929 High Similarity NPC291878
0.929 High Similarity NPC255106
0.929 High Similarity NPC278778
0.929 High Similarity NPC35038
0.929 High Similarity NPC195796
0.9286 High Similarity NPC255350
0.9286 High Similarity NPC167091
0.9286 High Similarity NPC176775
0.9286 High Similarity NPC250822
0.9286 High Similarity NPC472905
0.9286 High Similarity NPC75279
0.9286 High Similarity NPC298692
0.9286 High Similarity NPC160951
0.9286 High Similarity NPC271779
0.9286 High Similarity NPC206238
0.9286 High Similarity NPC47781
0.9286 High Similarity NPC274327
0.9286 High Similarity NPC69394
0.9286 High Similarity NPC145379
0.9286 High Similarity NPC22519
0.9286 High Similarity NPC231018
0.9286 High Similarity NPC276409
0.9286 High Similarity NPC292214
0.9286 High Similarity NPC88645
0.9286 High Similarity NPC183878
0.9281 High Similarity NPC171010
0.9281 High Similarity NPC117579
0.9281 High Similarity NPC251110
0.925 High Similarity NPC218226
0.9245 High Similarity NPC39306
0.9241 High Similarity NPC81679
0.9241 High Similarity NPC472964
0.9241 High Similarity NPC474150
0.9241 High Similarity NPC474162
0.9236 High Similarity NPC84571
0.9236 High Similarity NPC472631
0.9236 High Similarity NPC472630
0.9231 High Similarity NPC472598
0.9231 High Similarity NPC219867

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC320359 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9286 High Similarity NPD2801 Approved
0.9161 High Similarity NPD2393 Clinical (unspecified phase)
0.9097 High Similarity NPD1934 Approved
0.8824 High Similarity NPD1511 Approved
0.8758 High Similarity NPD5494 Approved
0.872 High Similarity NPD7473 Discontinued
0.871 High Similarity NPD1512 Approved
0.8688 High Similarity NPD3882 Suspended
0.8659 High Similarity NPD6166 Phase 2
0.8659 High Similarity NPD6168 Clinical (unspecified phase)
0.8659 High Similarity NPD6167 Clinical (unspecified phase)
0.865 High Similarity NPD6232 Discontinued
0.8563 High Similarity NPD7074 Phase 3
0.8562 High Similarity NPD1465 Phase 2
0.8562 High Similarity NPD7819 Suspended
0.8526 High Similarity NPD4378 Clinical (unspecified phase)
0.8503 High Similarity NPD5844 Phase 1
0.8503 High Similarity NPD7054 Approved
0.8457 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.8452 Intermediate Similarity NPD7472 Approved
0.8443 Intermediate Similarity NPD3818 Discontinued
0.8412 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.8405 Intermediate Similarity NPD7075 Discontinued
0.8395 Intermediate Similarity NPD3817 Phase 2
0.8375 Intermediate Similarity NPD4380 Phase 2
0.8364 Intermediate Similarity NPD6959 Discontinued
0.8333 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.8282 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.8246 Intermediate Similarity NPD7251 Discontinued
0.8198 Intermediate Similarity NPD7808 Phase 3
0.8194 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.8194 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.8187 Intermediate Similarity NPD6797 Phase 2
0.8176 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.8141 Intermediate Similarity NPD1549 Phase 2
0.8089 Intermediate Similarity NPD2800 Approved
0.8072 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.807 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.8063 Intermediate Similarity NPD2532 Approved
0.8063 Intermediate Similarity NPD2534 Approved
0.8063 Intermediate Similarity NPD2533 Approved
0.8039 Intermediate Similarity NPD943 Approved
0.8036 Intermediate Similarity NPD1247 Approved
0.8025 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.8023 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7988 Intermediate Similarity NPD7411 Suspended
0.7977 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7964 Intermediate Similarity NPD3749 Approved
0.7949 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.7949 Intermediate Similarity NPD1510 Phase 2
0.7947 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7939 Intermediate Similarity NPD6801 Discontinued
0.7925 Intermediate Similarity NPD3750 Approved
0.7923 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7922 Intermediate Similarity NPD1240 Approved
0.7898 Intermediate Similarity NPD6100 Approved
0.7898 Intermediate Similarity NPD2935 Discontinued
0.7898 Intermediate Similarity NPD2796 Approved
0.7898 Intermediate Similarity NPD6099 Approved
0.7895 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7888 Intermediate Similarity NPD6799 Approved
0.7866 Intermediate Similarity NPD3226 Approved
0.7848 Intermediate Similarity NPD2346 Discontinued
0.7844 Intermediate Similarity NPD5402 Approved
0.7836 Intermediate Similarity NPD3926 Phase 2
0.7834 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.7833 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7829 Intermediate Similarity NPD6559 Discontinued
0.7821 Intermediate Similarity NPD1607 Approved
0.7818 Intermediate Similarity NPD6599 Discontinued
0.7811 Intermediate Similarity NPD6234 Discontinued
0.7798 Intermediate Similarity NPD7768 Phase 2
0.7791 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7778 Intermediate Similarity NPD7390 Discontinued
0.7706 Intermediate Similarity NPD919 Approved
0.7701 Intermediate Similarity NPD7228 Approved
0.7692 Intermediate Similarity NPD1613 Approved
0.7692 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7654 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7643 Intermediate Similarity NPD447 Suspended
0.7643 Intermediate Similarity NPD230 Phase 1
0.7619 Intermediate Similarity NPD37 Approved
0.7616 Intermediate Similarity NPD7199 Phase 2
0.761 Intermediate Similarity NPD3748 Approved
0.761 Intermediate Similarity NPD2799 Discontinued
0.76 Intermediate Similarity NPD3751 Discontinued
0.7595 Intermediate Similarity NPD6651 Approved
0.7593 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7588 Intermediate Similarity NPD4965 Approved
0.7588 Intermediate Similarity NPD4966 Approved
0.7588 Intermediate Similarity NPD4967 Phase 2
0.7572 Intermediate Similarity NPD5711 Approved
0.7572 Intermediate Similarity NPD3787 Discontinued
0.7572 Intermediate Similarity NPD5710 Approved
0.7542 Intermediate Similarity NPD8313 Approved
0.7542 Intermediate Similarity NPD8312 Approved
0.7531 Intermediate Similarity NPD1243 Approved
0.7531 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.753 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7529 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7516 Intermediate Similarity NPD2344 Approved
0.7515 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD4625 Phase 3
0.75 Intermediate Similarity NPD3027 Phase 3
0.7458 Intermediate Similarity NPD7286 Phase 2
0.7452 Intermediate Similarity NPD2313 Discontinued
0.7452 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7447 Intermediate Similarity NPD6780 Approved
0.7447 Intermediate Similarity NPD6778 Approved
0.7447 Intermediate Similarity NPD6776 Approved
0.7447 Intermediate Similarity NPD6782 Approved
0.7447 Intermediate Similarity NPD6781 Approved
0.7447 Intermediate Similarity NPD6777 Approved
0.7447 Intermediate Similarity NPD6779 Approved
0.7425 Intermediate Similarity NPD920 Approved
0.7425 Intermediate Similarity NPD5403 Approved
0.7421 Intermediate Similarity NPD7435 Discontinued
0.7418 Intermediate Similarity NPD8150 Discontinued
0.7409 Intermediate Similarity NPD8151 Discontinued
0.7389 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.7381 Intermediate Similarity NPD1653 Approved
0.7378 Intermediate Similarity NPD4628 Phase 3
0.7374 Intermediate Similarity NPD5953 Discontinued
0.7371 Intermediate Similarity NPD7229 Phase 3
0.7349 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7346 Intermediate Similarity NPD1551 Phase 2
0.7342 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7333 Intermediate Similarity NPD2309 Approved
0.7333 Intermediate Similarity NPD7783 Phase 2
0.7333 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.733 Intermediate Similarity NPD7698 Approved
0.733 Intermediate Similarity NPD7697 Approved
0.733 Intermediate Similarity NPD7696 Phase 3
0.7322 Intermediate Similarity NPD8434 Phase 2
0.7312 Intermediate Similarity NPD1933 Approved
0.7305 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7305 Intermediate Similarity NPD5401 Approved
0.7292 Intermediate Similarity NPD7871 Phase 2
0.7292 Intermediate Similarity NPD7870 Phase 2
0.7277 Intermediate Similarity NPD6823 Phase 2
0.7268 Intermediate Similarity NPD7701 Phase 2
0.7261 Intermediate Similarity NPD9494 Approved
0.7244 Intermediate Similarity NPD1470 Approved
0.7238 Intermediate Similarity NPD7685 Pre-registration
0.7238 Intermediate Similarity NPD7240 Approved
0.7229 Intermediate Similarity NPD6190 Approved
0.7226 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.7215 Intermediate Similarity NPD4908 Phase 1
0.7208 Intermediate Similarity NPD1201 Approved
0.7194 Intermediate Similarity NPD7874 Approved
0.7194 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.7186 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.7181 Intermediate Similarity NPD6534 Approved
0.7181 Intermediate Similarity NPD4360 Phase 2
0.7181 Intermediate Similarity NPD4363 Phase 3
0.7181 Intermediate Similarity NPD6535 Approved
0.7169 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7161 Intermediate Similarity NPD9269 Phase 2
0.7158 Intermediate Similarity NPD7699 Phase 2
0.7158 Intermediate Similarity NPD7700 Phase 2
0.7157 Intermediate Similarity NPD7801 Approved
0.7151 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD4060 Phase 1
0.7135 Intermediate Similarity NPD5242 Approved
0.7135 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7134 Intermediate Similarity NPD5408 Approved
0.7134 Intermediate Similarity NPD1203 Approved
0.7134 Intermediate Similarity NPD5406 Approved
0.7134 Intermediate Similarity NPD5404 Approved
0.7134 Intermediate Similarity NPD5405 Approved
0.7126 Intermediate Similarity NPD5353 Approved
0.7125 Intermediate Similarity NPD3268 Approved
0.712 Intermediate Similarity NPD7090 Clinical (unspecified phase)
0.7115 Intermediate Similarity NPD4749 Approved
0.711 Intermediate Similarity NPD6844 Discontinued
0.7108 Intermediate Similarity NPD6674 Discontinued
0.7105 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7097 Intermediate Similarity NPD1610 Phase 2
0.7095 Intermediate Similarity NPD2403 Approved
0.7091 Intermediate Similarity NPD1471 Phase 3
0.7089 Intermediate Similarity NPD2798 Approved
0.7059 Intermediate Similarity NPD4287 Approved
0.7051 Intermediate Similarity NPD1608 Approved
0.7044 Intermediate Similarity NPD2861 Phase 2
0.7041 Intermediate Similarity NPD7584 Approved
0.7035 Intermediate Similarity NPD7458 Discontinued
0.7029 Intermediate Similarity NPD4288 Approved
0.7025 Intermediate Similarity NPD2797 Approved
0.7019 Intermediate Similarity NPD3764 Approved
0.7019 Intermediate Similarity NPD6410 Clinical (unspecified phase)
0.701 Intermediate Similarity NPD7907 Approved
0.7006 Intermediate Similarity NPD5698 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD6832 Phase 2
0.6987 Remote Similarity NPD1547 Clinical (unspecified phase)
0.6982 Remote Similarity NPD3300 Phase 2
0.6971 Remote Similarity NPD8455 Phase 2
0.6963 Remote Similarity NPD4362 Clinical (unspecified phase)
0.6963 Remote Similarity NPD4361 Phase 2
0.6962 Remote Similarity NPD6696 Suspended

Structure

External Identifiers

PubChem CID   10367180
ChEMBL   CHEMBL465205
ZINC  

Physicochemical Properties

Molecular Weight:  464.22
ALogP:  2.7279
MLogP:  3.88
XLogP:  4.413
# Rotatable Bonds:  16
Polar Surface Area:  107.22
# H-Bond Aceptor:  1
# H-Bond Donor:  4
# Rings:  3
# Heavy Atoms:  34

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs