Natural Product: NPC100123

Natural Product ID:  NPC100123
Common Name:   Cratoxyarborenone B
IUPAC Name:   1,3,5,7-tetrahydroxy-2,8-bis(3-methylbut-2-enyl)xanthen-9-one
Synonyms:   cratoxyarborenone B
Molecular Formula:   C23H24O6
Standard InCHIKey:  AVGUAOZYPIBDIZ-UHFFFAOYSA-N
Standard InCHI:  InChI=1S/C23H24O6/c1-11(2)5-7-13-15(24)9-17(26)23-19(13)22(28)20-18(29-23)10-16(25)14(21(20)27)8-6-12(3)4/h5-6,9-10,24-27H,7-8H2,1-4H3
Canonical SMILES:  CC(=CCc1c(O)cc2c(c1O)c(=O)c1c(o2)c(O)cc(c1CC=C(C)C)O)C
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO19227 Hippoglossus hippoglossus Species Pleuronectidae Eukaryota UNPD*
NPO13263 Verbena brasiliensis Species Verbenaceae Eukaryota UNPD*
NPO11770 Amphicome emodi NA NA NA UNPD*
NPO19359 Parmotrema delicatulum Species Parmeliaceae Eukaryota UNPD*
NPO9520 Cratoxylum sumatranum Species Hypericaceae Eukaryota UNPD*
NPO18657 Galanthus gracilis Species Amaryllidaceae Eukaryota UNPD*
NPO6106 Hymeniacidon perlevis Species Halichondriidae Eukaryota UNPD*
NPO18995 Gaultheria itoana Species Ericaceae Eukaryota UNPD*
NPO14950 Ardisia polycephala Species Primulaceae Eukaryota UNPD*
NPO16745 Scorzonera judaica Species Asteraceae Eukaryota UNPD*
NPO16038 Ribes rubrum Species Grossulariaceae Eukaryota UNPD*
NPO9520 Cratoxylum sumatranum Species Hypericaceae Eukaryota Twigs PMID[11908969]
NPO9520 Cratoxylum sumatranum Species Hypericaceae Eukaryota Leaves PMID[11908969]
NPO9520 Cratoxylum sumatranum Species Hypericaceae Eukaryota Stems PMID[11908969]
NPO17438 Polygala virgata Species Polygalaceae Eukaryota UNPD*
NPO19501 Pseudosuberites hyalinus Species Suberitidae Eukaryota UNPD*
NPO18005 Artemisia leucodes Species Asteraceae Eukaryota UNPD*
NPO19560 Populus italica Species Salicaceae Eukaryota UNPD*

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT91 Cell Line KB Homo sapiens EC50 = 1 ug/ml 11908969

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC100123 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9934 High Similarity NPC228785
0.9934 High Similarity NPC320359
0.9934 High Similarity NPC56085
0.9934 High Similarity NPC14353
0.9868 High Similarity NPC278052
0.9868 High Similarity NPC61010
0.9868 High Similarity NPC40491
0.9867 High Similarity NPC274730
0.9867 High Similarity NPC142339
0.9804 High Similarity NPC25152
0.9801 High Similarity NPC165977
0.9801 High Similarity NPC241904
0.9801 High Similarity NPC300727
0.9801 High Similarity NPC236796
0.9801 High Similarity NPC217677
0.974 High Similarity NPC236521
0.974 High Similarity NPC23298
0.974 High Similarity NPC7483
0.974 High Similarity NPC248638
0.974 High Similarity NPC189473
0.974 High Similarity NPC220313
0.974 High Similarity NPC152659
0.974 High Similarity NPC236132
0.9737 High Similarity NPC476242
0.9735 High Similarity NPC191146
0.9735 High Similarity NPC68093
0.9735 High Similarity NPC138243
0.9733 High Similarity NPC89474
0.9677 High Similarity NPC326520
0.9677 High Similarity NPC472450
0.9677 High Similarity NPC239752
0.9677 High Similarity NPC275780
0.9673 High Similarity NPC119224
0.9673 High Similarity NPC475886
0.9673 High Similarity NPC235018
0.9673 High Similarity NPC474287
0.9673 High Similarity NPC45146
0.9673 High Similarity NPC200746
0.9671 High Similarity NPC78225
0.9671 High Similarity NPC36852
0.9671 High Similarity NPC136674
0.9671 High Similarity NPC262286
0.9615 High Similarity NPC37870
0.9615 High Similarity NPC472449
0.9615 High Similarity NPC170245
0.9615 High Similarity NPC39091
0.9613 High Similarity NPC146134
0.9613 High Similarity NPC270837
0.961 High Similarity NPC474351
0.961 High Similarity NPC32694
0.961 High Similarity NPC475883
0.961 High Similarity NPC474186
0.961 High Similarity NPC474187
0.9608 High Similarity NPC235448
0.96 High Similarity NPC202157
0.9554 High Similarity NPC6588
0.9554 High Similarity NPC477154
0.9554 High Similarity NPC117854
0.9548 High Similarity NPC329760
0.9548 High Similarity NPC294965
0.9548 High Similarity NPC229632
0.9548 High Similarity NPC470694
0.9545 High Similarity NPC204290
0.9545 High Similarity NPC80375
0.9545 High Similarity NPC471973
0.9545 High Similarity NPC139036
0.9545 High Similarity NPC36217
0.9542 High Similarity NPC223787
0.9542 High Similarity NPC469584
0.9539 High Similarity NPC113906
0.9533 High Similarity NPC151473
0.9487 High Similarity NPC475985
0.9487 High Similarity NPC474350
0.9487 High Similarity NPC197168
0.9487 High Similarity NPC41301
0.9487 High Similarity NPC207690
0.9484 High Similarity NPC167678
0.9484 High Similarity NPC29876
0.9484 High Similarity NPC266314
0.9484 High Similarity NPC66288
0.9481 High Similarity NPC329091
0.9481 High Similarity NPC250214
0.9481 High Similarity NPC172770
0.9481 High Similarity NPC95936
0.9481 High Similarity NPC474290
0.9481 High Similarity NPC185258
0.9474 High Similarity NPC227337
0.9474 High Similarity NPC273462
0.9474 High Similarity NPC70433
0.9474 High Similarity NPC49402
0.9474 High Similarity NPC33051
0.9427 High Similarity NPC473286
0.9427 High Similarity NPC25361
0.9423 High Similarity NPC201800
0.9423 High Similarity NPC83922
0.9423 High Similarity NPC472448
0.9423 High Similarity NPC52204
0.9419 High Similarity NPC246478
0.9419 High Similarity NPC476980
0.9416 High Similarity NPC474836
0.9416 High Similarity NPC472910
0.9416 High Similarity NPC472913
0.9416 High Similarity NPC472914
0.9416 High Similarity NPC48208
0.9416 High Similarity NPC187745
0.9416 High Similarity NPC96167
0.9416 High Similarity NPC161960
0.9416 High Similarity NPC474208
0.9416 High Similarity NPC304008
0.9416 High Similarity NPC156057
0.9416 High Similarity NPC222814
0.9416 High Similarity NPC162869
0.9416 High Similarity NPC472911
0.9416 High Similarity NPC245758
0.9416 High Similarity NPC79053
0.9416 High Similarity NPC475267
0.9412 High Similarity NPC117992
0.9412 High Similarity NPC230149
0.9412 High Similarity NPC45849
0.9412 High Similarity NPC200761
0.9412 High Similarity NPC470327
0.9412 High Similarity NPC57674
0.9412 High Similarity NPC168247
0.9412 High Similarity NPC152951
0.9412 High Similarity NPC477503
0.9408 High Similarity NPC199100
0.9408 High Similarity NPC249570
0.9408 High Similarity NPC180234
0.9408 High Similarity NPC101996
0.9408 High Similarity NPC471982
0.9408 High Similarity NPC120537
0.9404 High Similarity NPC61620
0.9404 High Similarity NPC227122
0.9363 High Similarity NPC186686
0.9363 High Similarity NPC303460
0.9363 High Similarity NPC306321
0.9359 High Similarity NPC258331
0.9359 High Similarity NPC259456
0.9359 High Similarity NPC278427
0.9359 High Similarity NPC472275
0.9355 High Similarity NPC85121
0.9355 High Similarity NPC210459
0.9351 High Similarity NPC209614
0.9351 High Similarity NPC278778
0.9351 High Similarity NPC472916
0.9351 High Similarity NPC472907
0.9351 High Similarity NPC291878
0.9351 High Similarity NPC255106
0.9351 High Similarity NPC35038
0.9351 High Similarity NPC470328
0.9351 High Similarity NPC115853
0.9351 High Similarity NPC472626
0.9351 High Similarity NPC195796
0.9351 High Similarity NPC235165
0.9351 High Similarity NPC13779
0.9351 High Similarity NPC475799
0.9346 High Similarity NPC472905
0.9346 High Similarity NPC176775
0.9346 High Similarity NPC476631
0.9346 High Similarity NPC292214
0.9346 High Similarity NPC69394
0.9346 High Similarity NPC47781
0.9346 High Similarity NPC75279
0.9346 High Similarity NPC22519
0.9346 High Similarity NPC88645
0.9346 High Similarity NPC160951
0.9346 High Similarity NPC206238
0.9346 High Similarity NPC255350
0.9346 High Similarity NPC145379
0.9346 High Similarity NPC167091
0.9346 High Similarity NPC274327
0.9346 High Similarity NPC271779
0.9346 High Similarity NPC183878
0.9346 High Similarity NPC276409
0.9346 High Similarity NPC250822
0.9346 High Similarity NPC231018
0.9342 High Similarity NPC117579
0.9342 High Similarity NPC171010
0.9342 High Similarity NPC251110
0.9308 High Similarity NPC126204
0.9304 High Similarity NPC293319
0.9304 High Similarity NPC475888
0.9299 High Similarity NPC81679
0.9299 High Similarity NPC474162
0.9299 High Similarity NPC211107
0.9299 High Similarity NPC474150
0.9295 High Similarity NPC321399
0.9295 High Similarity NPC299436
0.9295 High Similarity NPC84571
0.929 High Similarity NPC219867
0.929 High Similarity NPC476981
0.929 High Similarity NPC210084
0.929 High Similarity NPC180011
0.929 High Similarity NPC27337
0.929 High Similarity NPC291508
0.929 High Similarity NPC474055
0.929 High Similarity NPC299520
0.929 High Similarity NPC472963
0.929 High Similarity NPC129684
0.929 High Similarity NPC181960

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC100123 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9346 High Similarity NPD2801 Approved
0.9221 High Similarity NPD2393 Clinical (unspecified phase)
0.9156 High Similarity NPD1934 Approved
0.8882 High Similarity NPD1511 Approved
0.8812 High Similarity NPD5494 Approved
0.8766 High Similarity NPD1512 Approved
0.8742 High Similarity NPD3882 Suspended
0.8712 High Similarity NPD6168 Clinical (unspecified phase)
0.8712 High Similarity NPD6166 Phase 2
0.8712 High Similarity NPD6167 Clinical (unspecified phase)
0.8704 High Similarity NPD6232 Discontinued
0.8659 High Similarity NPD7473 Discontinued
0.8616 High Similarity NPD1465 Phase 2
0.8581 High Similarity NPD4378 Clinical (unspecified phase)
0.8554 High Similarity NPD5844 Phase 1
0.8509 High Similarity NPD4868 Clinical (unspecified phase)
0.8503 High Similarity NPD7074 Phase 3
0.85 High Similarity NPD7819 Suspended
0.8494 Intermediate Similarity NPD3818 Discontinued
0.8462 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.8447 Intermediate Similarity NPD3817 Phase 2
0.8443 Intermediate Similarity NPD7054 Approved
0.8428 Intermediate Similarity NPD4380 Phase 2
0.8415 Intermediate Similarity NPD6959 Discontinued
0.8393 Intermediate Similarity NPD7472 Approved
0.8344 Intermediate Similarity NPD7075 Discontinued
0.8272 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.8247 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.8247 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.8235 Intermediate Similarity NPD6797 Phase 2
0.8228 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.8221 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.8194 Intermediate Similarity NPD1549 Phase 2
0.8187 Intermediate Similarity NPD7251 Discontinued
0.8141 Intermediate Similarity NPD2800 Approved
0.814 Intermediate Similarity NPD7808 Phase 3
0.8121 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.8113 Intermediate Similarity NPD2532 Approved
0.8113 Intermediate Similarity NPD2534 Approved
0.8113 Intermediate Similarity NPD2533 Approved
0.8092 Intermediate Similarity NPD943 Approved
0.8084 Intermediate Similarity NPD1247 Approved
0.8077 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.8037 Intermediate Similarity NPD7411 Suspended
0.8023 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.8012 Intermediate Similarity NPD3749 Approved
0.8012 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD1510 Phase 2
0.7988 Intermediate Similarity NPD6801 Discontinued
0.7975 Intermediate Similarity NPD3750 Approved
0.7974 Intermediate Similarity NPD1240 Approved
0.7966 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7949 Intermediate Similarity NPD2796 Approved
0.7949 Intermediate Similarity NPD2935 Discontinued
0.7947 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7937 Intermediate Similarity NPD6799 Approved
0.7914 Intermediate Similarity NPD3226 Approved
0.7898 Intermediate Similarity NPD2346 Discontinued
0.7892 Intermediate Similarity NPD5402 Approved
0.7885 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.7882 Intermediate Similarity NPD3926 Phase 2
0.7874 Intermediate Similarity NPD6559 Discontinued
0.7871 Intermediate Similarity NPD1607 Approved
0.7869 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7866 Intermediate Similarity NPD6599 Discontinued
0.7857 Intermediate Similarity NPD6234 Discontinued
0.7836 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7834 Intermediate Similarity NPD6100 Approved
0.7834 Intermediate Similarity NPD6099 Approved
0.7826 Intermediate Similarity NPD7390 Discontinued
0.7778 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7751 Intermediate Similarity NPD919 Approved
0.7742 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7742 Intermediate Similarity NPD1613 Approved
0.7738 Intermediate Similarity NPD7768 Phase 2
0.7692 Intermediate Similarity NPD230 Phase 1
0.7692 Intermediate Similarity NPD447 Suspended
0.7665 Intermediate Similarity NPD37 Approved
0.7661 Intermediate Similarity NPD7199 Phase 2
0.7658 Intermediate Similarity NPD2799 Discontinued
0.7658 Intermediate Similarity NPD3748 Approved
0.7644 Intermediate Similarity NPD3751 Discontinued
0.7644 Intermediate Similarity NPD7228 Approved
0.7633 Intermediate Similarity NPD4966 Approved
0.7633 Intermediate Similarity NPD4965 Approved
0.7633 Intermediate Similarity NPD4967 Phase 2
0.7616 Intermediate Similarity NPD5710 Approved
0.7616 Intermediate Similarity NPD3787 Discontinued
0.7616 Intermediate Similarity NPD5711 Approved
0.7598 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7578 Intermediate Similarity NPD1243 Approved
0.7578 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7576 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7572 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7562 Intermediate Similarity NPD2344 Approved
0.7561 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.7548 Intermediate Similarity NPD4625 Phase 3
0.7548 Intermediate Similarity NPD3027 Phase 3
0.7532 Intermediate Similarity NPD6651 Approved
0.7531 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD2313 Discontinued
0.7487 Intermediate Similarity NPD6777 Approved
0.7487 Intermediate Similarity NPD6776 Approved
0.7487 Intermediate Similarity NPD6779 Approved
0.7487 Intermediate Similarity NPD6778 Approved
0.7487 Intermediate Similarity NPD6782 Approved
0.7487 Intermediate Similarity NPD6780 Approved
0.7487 Intermediate Similarity NPD6781 Approved
0.7486 Intermediate Similarity NPD8312 Approved
0.7486 Intermediate Similarity NPD8313 Approved
0.747 Intermediate Similarity NPD5403 Approved
0.747 Intermediate Similarity NPD920 Approved
0.743 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.7425 Intermediate Similarity NPD1653 Approved
0.7423 Intermediate Similarity NPD4628 Phase 3
0.7416 Intermediate Similarity NPD5953 Discontinued
0.7401 Intermediate Similarity NPD7286 Phase 2
0.7394 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7391 Intermediate Similarity NPD1551 Phase 2
0.7389 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7389 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7378 Intermediate Similarity NPD2309 Approved
0.7368 Intermediate Similarity NPD7435 Discontinued
0.7363 Intermediate Similarity NPD8150 Discontinued
0.7358 Intermediate Similarity NPD8151 Discontinued
0.7358 Intermediate Similarity NPD1933 Approved
0.7349 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7349 Intermediate Similarity NPD5401 Approved
0.7314 Intermediate Similarity NPD7229 Phase 3
0.7308 Intermediate Similarity NPD9494 Approved
0.729 Intermediate Similarity NPD1470 Approved
0.7282 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.7282 Intermediate Similarity NPD7783 Phase 2
0.7277 Intermediate Similarity NPD7698 Approved
0.7277 Intermediate Similarity NPD7697 Approved
0.7277 Intermediate Similarity NPD7696 Phase 3
0.7273 Intermediate Similarity NPD6190 Approved
0.7273 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.7268 Intermediate Similarity NPD8434 Phase 2
0.7261 Intermediate Similarity NPD4908 Phase 1
0.7255 Intermediate Similarity NPD1201 Approved
0.724 Intermediate Similarity NPD7870 Phase 2
0.724 Intermediate Similarity NPD7871 Phase 2
0.7229 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.7225 Intermediate Similarity NPD6823 Phase 2
0.7219 Intermediate Similarity NPD4360 Phase 2
0.7219 Intermediate Similarity NPD4363 Phase 3
0.7219 Intermediate Similarity NPD6535 Approved
0.7219 Intermediate Similarity NPD6534 Approved
0.7216 Intermediate Similarity NPD7701 Phase 2
0.7212 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7208 Intermediate Similarity NPD9269 Phase 2
0.7188 Intermediate Similarity NPD4060 Phase 1
0.7182 Intermediate Similarity NPD7685 Pre-registration
0.7182 Intermediate Similarity NPD7240 Approved
0.7179 Intermediate Similarity NPD1203 Approved
0.7178 Intermediate Similarity NPD5408 Approved
0.7178 Intermediate Similarity NPD5406 Approved
0.7178 Intermediate Similarity NPD5404 Approved
0.7178 Intermediate Similarity NPD5405 Approved
0.7176 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7175 Intermediate Similarity NPD5242 Approved
0.717 Intermediate Similarity NPD3268 Approved
0.7161 Intermediate Similarity NPD4749 Approved
0.7143 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD1610 Phase 2
0.7143 Intermediate Similarity NPD7874 Approved
0.7135 Intermediate Similarity NPD2403 Approved
0.7134 Intermediate Similarity NPD1471 Phase 3
0.7134 Intermediate Similarity NPD2798 Approved
0.7107 Intermediate Similarity NPD7801 Approved
0.7105 Intermediate Similarity NPD7700 Phase 2
0.7105 Intermediate Similarity NPD7699 Phase 2
0.7097 Intermediate Similarity NPD4287 Approved
0.7097 Intermediate Similarity NPD1608 Approved
0.7093 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7089 Intermediate Similarity NPD2861 Phase 2
0.707 Intermediate Similarity NPD2797 Approved
0.7069 Intermediate Similarity NPD5353 Approved
0.7069 Intermediate Similarity NPD4288 Approved
0.7065 Intermediate Similarity NPD7090 Clinical (unspecified phase)
0.7063 Intermediate Similarity NPD3764 Approved
0.7053 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7052 Intermediate Similarity NPD6844 Discontinued
0.7048 Intermediate Similarity NPD5698 Clinical (unspecified phase)
0.7048 Intermediate Similarity NPD6674 Discontinued
0.7041 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7032 Intermediate Similarity NPD1547 Clinical (unspecified phase)
0.7024 Intermediate Similarity NPD3300 Phase 2
0.7 Intermediate Similarity NPD4361 Phase 2
0.7 Intermediate Similarity NPD4362 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD1940 Clinical (unspecified phase)
0.6995 Remote Similarity NPD2493 Approved
0.6995 Remote Similarity NPD2494 Approved
0.699 Remote Similarity NPD7584 Approved
0.6988 Remote Similarity NPD2424 Discontinued
0.6987 Remote Similarity NPD9717 Approved
0.6984 Remote Similarity NPD6212 Phase 3

Structure

External Identifiers

PubChem CID   10475842
ChEMBL   CHEMBL465407
ZINC  

Physicochemical Properties

Molecular Weight:  396.16
ALogP:  1.4957
MLogP:  3.33
XLogP:  2.591
# Rotatable Bonds:  12
Polar Surface Area:  107.22
# H-Bond Aceptor:  1
# H-Bond Donor:  4
# Rings:  3
# Heavy Atoms:  29

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs