Natural Product: NPC320064

Natural Product ID:  NPC320064
Common Name:   Katimborine
IUPAC Name:   4-[(2S,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-1-methylquinolin-2-one
Synonyms:   katimborine
Molecular Formula:   C22H29NO11
Standard InCHIKey:  ASAXLUXKTGJUKN-KNEOXYRNSA-N
Standard InCHI:  InChI=1S/C22H29NO11/c1-9-15(26)17(28)19(30)21(31-9)34-20-18(29)16(27)13(8-24)33-22(20)32-12-7-14(25)23(2)11-6-4-3-5-10(11)12/h3-7,9,13,15-22,24,26-30H,8H2,1-2H3/t9-,13+,15-,16+,17+,18-,19+,20+,21-,22+/m0/s1
Canonical SMILES:  OC[C@H]1O[C@@H](Oc2cc(=O)n(c3c2cccc3)C)[C@@H]([C@H]([C@@H]1O)O)O[C@@H]1O[C@@H](C)[C@@H]([C@H]([C@H]1O)O)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO1762 Citropsis articulata Species Rutaceae Eukaryota Root barks PMID[21985060]
NPO1762 Citropsis articulata Species Rutaceae Eukaryota Root PMID[21985060]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT1225 Organism Plasmodium falciparum (isolate FcB1 / Columbia) Plasmodium falciparum FcB1/Columbia IC50 > 100 ug/ml 21985060
NPT633 Organism Leishmania donovani Leishmania donovani EC50 > 125 ug/ml 21985060
NPT471 Organism Trypanosoma brucei brucei Trypanosoma brucei brucei EC50 > 125 ug/ml 21985060
NPT189 Cell Line Vero Chlorocebus aethiops IC50 > 50 ug/ml 21985060

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC320064 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.8027 Intermediate Similarity NPC250476
0.7933 Intermediate Similarity NPC231382
0.7931 Intermediate Similarity NPC291759
0.7874 Intermediate Similarity NPC133591
0.7829 Intermediate Similarity NPC38823
0.7829 Intermediate Similarity NPC207033
0.761 Intermediate Similarity NPC308197
0.7588 Intermediate Similarity NPC470971
0.7446 Intermediate Similarity NPC472191
0.7378 Intermediate Similarity NPC242000
0.734 Intermediate Similarity NPC311357
0.7333 Intermediate Similarity NPC262725
0.7292 Intermediate Similarity NPC477548
0.7273 Intermediate Similarity NPC129624
0.72 Intermediate Similarity NPC14950
0.7159 Intermediate Similarity NPC307640
0.7143 Intermediate Similarity NPC248903
0.7135 Intermediate Similarity NPC220560
0.7114 Intermediate Similarity NPC148124
0.7095 Intermediate Similarity NPC287152
0.7094 Intermediate Similarity NPC26928
0.7079 Intermediate Similarity NPC290069
0.7065 Intermediate Similarity NPC99724
0.7065 Intermediate Similarity NPC316405
0.7052 Intermediate Similarity NPC253667
0.7052 Intermediate Similarity NPC35510
0.7005 Intermediate Similarity NPC471825
0.6943 Remote Similarity NPC475448
0.6943 Remote Similarity NPC246983
0.6939 Remote Similarity NPC30563
0.6936 Remote Similarity NPC301163
0.6914 Remote Similarity NPC139506
0.6914 Remote Similarity NPC292143
0.6891 Remote Similarity NPC475223
0.6871 Remote Similarity NPC474148
0.6871 Remote Similarity NPC276061
0.6842 Remote Similarity NPC216605
0.6842 Remote Similarity NPC266389
0.6842 Remote Similarity NPC122245
0.6834 Remote Similarity NPC244856
0.6831 Remote Similarity NPC116096
0.6815 Remote Similarity NPC325013
0.68 Remote Similarity NPC306644
0.68 Remote Similarity NPC236424
0.6771 Remote Similarity NPC324245
0.6771 Remote Similarity NPC320748
0.6766 Remote Similarity NPC274842
0.6763 Remote Similarity NPC471073
0.6763 Remote Similarity NPC270811
0.6751 Remote Similarity NPC474905
0.6738 Remote Similarity NPC328798
0.6738 Remote Similarity NPC325775
0.6736 Remote Similarity NPC267414
0.6721 Remote Similarity NPC49353
0.672 Remote Similarity NPC127647
0.6708 Remote Similarity NPC314473
0.6705 Remote Similarity NPC471132
0.6703 Remote Similarity NPC327373
0.6701 Remote Similarity NPC79223
0.6701 Remote Similarity NPC309498
0.6698 Remote Similarity NPC99891
0.6686 Remote Similarity NPC136951
0.6686 Remote Similarity NPC161155
0.6686 Remote Similarity NPC97004
0.6685 Remote Similarity NPC472106
0.6685 Remote Similarity NPC85613
0.6682 Remote Similarity NPC472434
0.6667 Remote Similarity NPC229600
0.6667 Remote Similarity NPC32451
0.6667 Remote Similarity NPC328559
0.6667 Remote Similarity NPC470825
0.6647 Remote Similarity NPC97282
0.6632 Remote Similarity NPC329024
0.663 Remote Similarity NPC475094
0.6629 Remote Similarity NPC10875
0.6629 Remote Similarity NPC112766
0.6629 Remote Similarity NPC313757
0.6629 Remote Similarity NPC10730
0.6626 Remote Similarity NPC138777
0.6626 Remote Similarity NPC246869
0.6626 Remote Similarity NPC225384
0.6625 Remote Similarity NPC114096
0.6614 Remote Similarity NPC182814
0.6613 Remote Similarity NPC325093
0.6613 Remote Similarity NPC322043
0.6605 Remote Similarity NPC295970
0.66 Remote Similarity NPC264784
0.6599 Remote Similarity NPC476115
0.6599 Remote Similarity NPC37714
0.6599 Remote Similarity NPC152384
0.6587 Remote Similarity NPC36434
0.6585 Remote Similarity NPC184437
0.6585 Remote Similarity NPC174788
0.6584 Remote Similarity NPC148026
0.6583 Remote Similarity NPC156044
0.6579 Remote Similarity NPC120217
0.6575 Remote Similarity NPC469915
0.6573 Remote Similarity NPC472120
0.6573 Remote Similarity NPC472101
0.6573 Remote Similarity NPC472117
0.6566 Remote Similarity NPC268077
0.6564 Remote Similarity NPC160127
0.6564 Remote Similarity NPC50997
0.6548 Remote Similarity NPC298821
0.6543 Remote Similarity NPC318020
0.6529 Remote Similarity NPC178466
0.6529 Remote Similarity NPC63628
0.6524 Remote Similarity NPC235294
0.6524 Remote Similarity NPC46137
0.6518 Remote Similarity NPC472435
0.6517 Remote Similarity NPC477160
0.6515 Remote Similarity NPC207971
0.6513 Remote Similarity NPC317672
0.6513 Remote Similarity NPC59033
0.6509 Remote Similarity NPC123761
0.6505 Remote Similarity NPC5167
0.6505 Remote Similarity NPC82070
0.6502 Remote Similarity NPC111732
0.65 Remote Similarity NPC57607
0.65 Remote Similarity NPC70172
0.65 Remote Similarity NPC145287
0.6497 Remote Similarity NPC70549
0.6489 Remote Similarity NPC97584
0.6488 Remote Similarity NPC315051
0.6486 Remote Similarity NPC127082
0.6482 Remote Similarity NPC25442
0.6482 Remote Similarity NPC12944
0.6481 Remote Similarity NPC106677
0.648 Remote Similarity NPC85651
0.6478 Remote Similarity NPC476142
0.6467 Remote Similarity NPC184633
0.6463 Remote Similarity NPC319995
0.6463 Remote Similarity NPC289415
0.6463 Remote Similarity NPC469527
0.6458 Remote Similarity NPC129909
0.6447 Remote Similarity NPC127178
0.6446 Remote Similarity NPC173295
0.6443 Remote Similarity NPC21483
0.6443 Remote Similarity NPC198205
0.6441 Remote Similarity NPC140915
0.6441 Remote Similarity NPC10221
0.6441 Remote Similarity NPC305700
0.6441 Remote Similarity NPC187028
0.6441 Remote Similarity NPC197741
0.6441 Remote Similarity NPC18249
0.644 Remote Similarity NPC477998
0.6436 Remote Similarity NPC477159
0.6433 Remote Similarity NPC282578
0.6432 Remote Similarity NPC472436
0.6429 Remote Similarity NPC71124
0.6429 Remote Similarity NPC311054
0.6429 Remote Similarity NPC112752
0.6425 Remote Similarity NPC19023
0.6425 Remote Similarity NPC93653
0.6425 Remote Similarity NPC474058
0.642 Remote Similarity NPC276047
0.642 Remote Similarity NPC267733
0.642 Remote Similarity NPC471157
0.6414 Remote Similarity NPC136573
0.6414 Remote Similarity NPC176371
0.6413 Remote Similarity NPC276993
0.6413 Remote Similarity NPC293255
0.6413 Remote Similarity NPC181138
0.6413 Remote Similarity NPC298851
0.6413 Remote Similarity NPC210415
0.6413 Remote Similarity NPC21752
0.641 Remote Similarity NPC162653
0.6409 Remote Similarity NPC24954
0.6406 Remote Similarity NPC105055
0.6406 Remote Similarity NPC314702
0.6406 Remote Similarity NPC22689
0.6404 Remote Similarity NPC25961
0.6402 Remote Similarity NPC253595
0.64 Remote Similarity NPC87714
0.64 Remote Similarity NPC139699
0.64 Remote Similarity NPC114659
0.6398 Remote Similarity NPC186669
0.6396 Remote Similarity NPC90358
0.6396 Remote Similarity NPC5374
0.6396 Remote Similarity NPC107828
0.6394 Remote Similarity NPC52254
0.6392 Remote Similarity NPC254957
0.6391 Remote Similarity NPC101686
0.6391 Remote Similarity NPC469364
0.6391 Remote Similarity NPC65262
0.639 Remote Similarity NPC217903
0.639 Remote Similarity NPC151781
0.639 Remote Similarity NPC74562
0.639 Remote Similarity NPC316181
0.638 Remote Similarity NPC81092
0.638 Remote Similarity NPC197680
0.638 Remote Similarity NPC288416
0.638 Remote Similarity NPC103605
0.638 Remote Similarity NPC259098
0.638 Remote Similarity NPC101372
0.6378 Remote Similarity NPC198390
0.6377 Remote Similarity NPC162812
0.6375 Remote Similarity NPC52097
0.6374 Remote Similarity NPC19555
0.6374 Remote Similarity NPC168750

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC320064 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.7613 Intermediate Similarity NPD2791 Discontinued
0.7284 Intermediate Similarity NPD4430 Phase 2
0.7151 Intermediate Similarity NPD4871 Phase 2
0.7151 Intermediate Similarity NPD2995 Approved
0.7135 Intermediate Similarity NPD5521 Clinical (unspecified phase)
0.7095 Intermediate Similarity NPD5900 Clinical (unspecified phase)
0.7039 Intermediate Similarity NPD3793 Phase 3
0.6982 Remote Similarity NPD3277 Phase 3
0.6931 Remote Similarity NPD5582 Discontinued
0.6914 Remote Similarity NPD3789 Approved
0.6864 Remote Similarity NPD8389 Clinical (unspecified phase)
0.6845 Remote Similarity NPD3278 Clinical (unspecified phase)
0.6837 Remote Similarity NPD7263 Phase 2
0.6826 Remote Similarity NPD2387 Approved
0.6734 Remote Similarity NPD4900 Clinical (unspecified phase)
0.6724 Remote Similarity NPD2836 Approved
0.6722 Remote Similarity NPD2388 Discontinued
0.6707 Remote Similarity NPD4168 Approved
0.6702 Remote Similarity NPD6608 Clinical (unspecified phase)
0.6701 Remote Similarity NPD4901 Clinical (unspecified phase)
0.6685 Remote Similarity NPD6496 Clinical (unspecified phase)
0.6685 Remote Similarity NPD6211 Clinical (unspecified phase)
0.6684 Remote Similarity NPD7064 Clinical (unspecified phase)
0.663 Remote Similarity NPD2215 Approved
0.663 Remote Similarity NPD2216 Approved
0.6593 Remote Similarity NPD5997 Discontinued
0.6587 Remote Similarity NPD3605 Approved
0.6587 Remote Similarity NPD3068 Approved
0.6582 Remote Similarity NPD519 Approved
0.658 Remote Similarity NPD7880 Clinical (unspecified phase)
0.6575 Remote Similarity NPD5847 Phase 1
0.657 Remote Similarity NPD7528 Approved
0.6566 Remote Similarity NPD5102 Clinical (unspecified phase)
0.6566 Remote Similarity NPD2670 Approved
0.6557 Remote Similarity NPD5938 Phase 3
0.6552 Remote Similarity NPD1678 Clinical (unspecified phase)
0.6546 Remote Similarity NPD6621 Clinical (unspecified phase)
0.6534 Remote Similarity NPD6396 Clinical (unspecified phase)
0.6534 Remote Similarity NPD4201 Clinical (unspecified phase)
0.6534 Remote Similarity NPD6395 Phase 2
0.6529 Remote Similarity NPD2241 Approved
0.6509 Remote Similarity NPD2578 Phase 3
0.6505 Remote Similarity NPD6654 Clinical (unspecified phase)
0.6505 Remote Similarity NPD6878 Phase 2
0.6505 Remote Similarity NPD6879 Phase 2
0.6497 Remote Similarity NPD1769 Discontinued
0.6474 Remote Similarity NPD4644 Clinical (unspecified phase)
0.6474 Remote Similarity NPD8103 Clinical (unspecified phase)
0.6474 Remote Similarity NPD4515 Suspended
0.6458 Remote Similarity NPD5042 Phase 1
0.6458 Remote Similarity NPD3785 Clinical (unspecified phase)
0.6455 Remote Similarity NPD6021 Clinical (unspecified phase)
0.645 Remote Similarity NPD3069 Approved
0.645 Remote Similarity NPD521 Clinical (unspecified phase)
0.6443 Remote Similarity NPD1065 Approved
0.6443 Remote Similarity NPD1064 Approved
0.644 Remote Similarity NPD7444 Clinical (unspecified phase)
0.6432 Remote Similarity NPD6669 Phase 2
0.6429 Remote Similarity NPD7890 Discontinued
0.6425 Remote Similarity NPD6063 Approved
0.6416 Remote Similarity NPD7441 Clinical (unspecified phase)
0.6413 Remote Similarity NPD5858 Discontinued
0.6412 Remote Similarity NPD1908 Phase 2
0.6412 Remote Similarity NPD6414 Clinical (unspecified phase)
0.64 Remote Similarity NPD8330 Clinical (unspecified phase)
0.6396 Remote Similarity NPD6874 Approved
0.6393 Remote Similarity NPD5186 Approved
0.6393 Remote Similarity NPD5183 Approved
0.6387 Remote Similarity NPD6793 Clinical (unspecified phase)
0.6378 Remote Similarity NPD7238 Clinical (unspecified phase)
0.6374 Remote Similarity NPD2162 Clinical (unspecified phase)
0.6374 Remote Similarity NPD2904 Discontinued
0.6364 Remote Similarity NPD5542 Phase 2
0.6359 Remote Similarity NPD4897 Phase 2
0.6359 Remote Similarity NPD3824 Phase 1
0.6359 Remote Similarity NPD7256 Discontinued
0.6354 Remote Similarity NPD4334 Discontinued
0.6343 Remote Similarity NPD2737 Clinical (unspecified phase)
0.6337 Remote Similarity NPD7584 Approved
0.6337 Remote Similarity NPD7583 Approved
0.6331 Remote Similarity NPD822 Approved
0.6331 Remote Similarity NPD3170 Approved
0.6328 Remote Similarity NPD4121 Phase 3
0.6328 Remote Similarity NPD4120 Approved
0.6325 Remote Similarity NPD1594 Phase 3
0.6325 Remote Similarity NPD1595 Approved
0.6324 Remote Similarity NPD6365 Clinical (unspecified phase)
0.6319 Remote Similarity NPD7247 Discontinued
0.6316 Remote Similarity NPD4598 Approved
0.6316 Remote Similarity NPD4597 Approved
0.6313 Remote Similarity NPD7735 Clinical (unspecified phase)
0.631 Remote Similarity NPD5334 Clinical (unspecified phase)
0.6308 Remote Similarity NPD5150 Phase 2
0.6305 Remote Similarity NPD7585 Approved
0.6302 Remote Similarity NPD6891 Phase 2
0.6296 Remote Similarity NPD6320 Approved
0.6294 Remote Similarity NPD6206 Phase 1
0.6292 Remote Similarity NPD5741 Approved
0.6292 Remote Similarity NPD5742 Approved
0.6292 Remote Similarity NPD5743 Approved
0.6291 Remote Similarity NPD7186 Phase 3
0.629 Remote Similarity NPD6316 Clinical (unspecified phase)
0.6289 Remote Similarity NPD5723 Approved
0.6278 Remote Similarity NPD4485 Approved
0.6278 Remote Similarity NPD6060 Clinical (unspecified phase)
0.6278 Remote Similarity NPD5294 Clinical (unspecified phase)
0.6278 Remote Similarity NPD3388 Phase 1
0.6272 Remote Similarity NPD6636 Phase 3
0.6264 Remote Similarity NPD6533 Clinical (unspecified phase)
0.6263 Remote Similarity NPD6261 Phase 3
0.6257 Remote Similarity NPD7266 Discontinued
0.6256 Remote Similarity NPD7569 Approved
0.6256 Remote Similarity NPD7570 Approved
0.625 Remote Similarity NPD5444 Phase 1
0.625 Remote Similarity NPD7476 Discontinued
0.625 Remote Similarity NPD6457 Approved
0.6242 Remote Similarity NPD4365 Phase 2
0.6237 Remote Similarity NPD4428 Discontinued
0.6237 Remote Similarity NPD3321 Discontinued
0.6237 Remote Similarity NPD7630 Phase 3
0.6237 Remote Similarity NPD7628 Phase 3
0.6237 Remote Similarity NPD7629 Clinical (unspecified phase)
0.6236 Remote Similarity NPD6357 Discontinued
0.6231 Remote Similarity NPD3800 Clinical (unspecified phase)
0.6231 Remote Similarity NPD6249 Phase 2
0.6231 Remote Similarity NPD1880 Phase 3
0.6231 Remote Similarity NPD6248 Phase 2
0.6229 Remote Similarity NPD1802 Approved
0.6229 Remote Similarity NPD1801 Approved
0.6226 Remote Similarity NPD1306 Clinical (unspecified phase)
0.6224 Remote Similarity NPD7262 Phase 1
0.6223 Remote Similarity NPD3449 Discontinued
0.622 Remote Similarity NPD8326 Phase 3
0.622 Remote Similarity NPD8325 Phase 3
0.622 Remote Similarity NPD8327 Clinical (unspecified phase)
0.6211 Remote Similarity NPD7149 Clinical (unspecified phase)
0.6209 Remote Similarity NPD3437 Discontinued
0.6205 Remote Similarity NPD6659 Phase 2
0.6205 Remote Similarity NPD3808 Clinical (unspecified phase)
0.6204 Remote Similarity NPD7589 Clinical (unspecified phase)
0.6203 Remote Similarity NPD5919 Clinical (unspecified phase)
0.6198 Remote Similarity NPD8167 Discontinued
0.6196 Remote Similarity NPD5823 Approved
0.6196 Remote Similarity NPD2041 Clinical (unspecified phase)
0.6196 Remote Similarity NPD2042 Clinical (unspecified phase)
0.6193 Remote Similarity NPD5941 Approved
0.6193 Remote Similarity NPD5942 Approved
0.6193 Remote Similarity NPD2335 Discontinued
0.6188 Remote Similarity NPD2842 Clinical (unspecified phase)
0.6186 Remote Similarity NPD5620 Clinical (unspecified phase)
0.6185 Remote Similarity NPD2820 Phase 3
0.6185 Remote Similarity NPD6301 Phase 2
0.6181 Remote Similarity NPD5071 Phase 2
0.6179 Remote Similarity NPD7805 Phase 3
0.6179 Remote Similarity NPD5506 Approved
0.6179 Remote Similarity NPD5507 Approved
0.6176 Remote Similarity NPD3864 Clinical (unspecified phase)
0.6176 Remote Similarity NPD7043 Discontinued
0.6173 Remote Similarity NPD4315 Phase 2
0.6173 Remote Similarity NPD5214 Phase 2
0.6171 Remote Similarity NPD3141 Discontinued
0.617 Remote Similarity NPD5603 Clinical (unspecified phase)
0.617 Remote Similarity NPD4020 Clinical (unspecified phase)
0.6164 Remote Similarity NPD1668 Clinical (unspecified phase)
0.6163 Remote Similarity NPD3656 Approved
0.6163 Remote Similarity NPD2093 Discontinued
0.6162 Remote Similarity NPD7126 Discontinued
0.6158 Remote Similarity NPD4513 Discontinued
0.6158 Remote Similarity NPD7891 Discontinued
0.6154 Remote Similarity NPD6136 Phase 2
0.6154 Remote Similarity NPD5896 Clinical (unspecified phase)
0.6154 Remote Similarity NPD5181 Approved
0.6154 Remote Similarity NPD1012 Discontinued
0.6154 Remote Similarity NPD5179 Approved
0.6154 Remote Similarity NPD7600 Phase 2
0.6154 Remote Similarity NPD5180 Approved
0.615 Remote Similarity NPD5078 Clinical (unspecified phase)
0.6147 Remote Similarity NPD7796 Approved
0.6147 Remote Similarity NPD7797 Approved
0.6141 Remote Similarity NPD7035 Approved
0.6141 Remote Similarity NPD3363 Clinical (unspecified phase)
0.6141 Remote Similarity NPD7036 Phase 3
0.614 Remote Similarity NPD7224 Discontinued
0.614 Remote Similarity NPD7223 Discontinued
0.6136 Remote Similarity NPD7794 Clinical (unspecified phase)
0.6134 Remote Similarity NPD6484 Approved
0.6134 Remote Similarity NPD6483 Approved
0.6134 Remote Similarity NPD4951 Discontinued
0.6133 Remote Similarity NPD5715 Clinical (unspecified phase)
0.6133 Remote Similarity NPD6886 Approved
0.6133 Remote Similarity NPD6885 Approved
0.6132 Remote Similarity NPD8479 Phase 2
0.6129 Remote Similarity NPD969 Suspended
0.6127 Remote Similarity NPD2365 Approved
0.6121 Remote Similarity NPD3912 Discontinued
0.6119 Remote Similarity NPD6519 Phase 2
0.6118 Remote Similarity NPD2492 Phase 1
0.6117 Remote Similarity NPD7449 Clinical (unspecified phase)
0.6114 Remote Similarity NPD6622 Phase 1
0.6114 Remote Similarity NPD5595 Clinical (unspecified phase)

Structure

External Identifiers

PubChem CID   56602472
ChEMBL   CHEMBL1928407
ZINC  

Physicochemical Properties

Molecular Weight:  483.17
ALogP:  -4.0723
MLogP:  2.56
XLogP:  -0.237
# Rotatable Bonds:  13
Polar Surface Area:  178.61
# H-Bond Aceptor:  12
# H-Bond Donor:  6
# Rings:  4
# Heavy Atoms:  34

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
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