Natural Product: NPC129624

Natural Product ID:  NPC129624
Common Name:   Bruceolline N
IUPAC Name:   (3R)-3-[(2S)-2,3-dihydroxy-3-methylbutyl]-3-hydroxy-1-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]indol-2-one
Synonyms:   Bruceolline N
Molecular Formula:   C19H27NO9
Standard InCHIKey:  QKHYSKWZRQYVRE-JYHHGOMKSA-N
Standard InCHI:  InChI=1S/C19H27NO9/c1-18(2,27)12(22)7-19(28)9-5-3-4-6-10(9)20(17(19)26)16-15(25)14(24)13(23)11(8-21)29-16/h3-6,11-16,21-25,27-28H,7-8H2,1-2H3/t11-,12+,13-,14+,15-,16-,19-/m1/s1
Canonical SMILES:  OC[C@H]1O[C@H]([C@@H]([C@H]([C@@H]1O)O)O)N1c2ccccc2[C@](C1=O)(O)C[C@@H](C(O)(C)C)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO15436 Brucea mollis Species Simaroubaceae Eukaryota Stems PMID[22070654]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT180 Cell Line HCT-8 Homo sapiens IC50 > 10000 nM 22070654
NPT181 Cell Line Bel-7402 Homo sapiens IC50 > 10000 nM 22070654
NPT81 Cell Line A549 Homo sapiens IC50 > 10000 nM 22070654
NPT2 Others Unspecified IC50 > 10000 nM 22070654
NPT179 Cell Line A2780 Homo sapiens IC50 > 10000 nM 22070654

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC129624 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.8107 Intermediate Similarity NPC313757
0.8023 Intermediate Similarity NPC477159
0.7877 Intermediate Similarity NPC245741
0.7733 Intermediate Similarity NPC472120
0.7733 Intermediate Similarity NPC472117
0.7733 Intermediate Similarity NPC472101
0.7692 Intermediate Similarity NPC282092
0.7654 Intermediate Similarity NPC475094
0.7644 Intermediate Similarity NPC472106
0.7609 Intermediate Similarity NPC284706
0.7578 Intermediate Similarity NPC476102
0.7578 Intermediate Similarity NPC260045
0.7578 Intermediate Similarity NPC293377
0.7578 Intermediate Similarity NPC79465
0.7578 Intermediate Similarity NPC76785
0.7578 Intermediate Similarity NPC9687
0.7578 Intermediate Similarity NPC273907
0.7578 Intermediate Similarity NPC474811
0.7578 Intermediate Similarity NPC151706
0.7578 Intermediate Similarity NPC475318
0.7578 Intermediate Similarity NPC49577
0.7578 Intermediate Similarity NPC475598
0.7578 Intermediate Similarity NPC474855
0.7578 Intermediate Similarity NPC90194
0.7578 Intermediate Similarity NPC118099
0.7578 Intermediate Similarity NPC474787
0.7572 Intermediate Similarity NPC309531
0.7572 Intermediate Similarity NPC472102
0.7529 Intermediate Similarity NPC85651
0.75 Intermediate Similarity NPC29285
0.75 Intermediate Similarity NPC291759
0.7471 Intermediate Similarity NPC315368
0.7446 Intermediate Similarity NPC133591
0.7405 Intermediate Similarity NPC207033
0.7405 Intermediate Similarity NPC38823
0.7405 Intermediate Similarity NPC262725
0.7401 Intermediate Similarity NPC472115
0.7401 Intermediate Similarity NPC472114
0.7382 Intermediate Similarity NPC149708
0.736 Intermediate Similarity NPC477160
0.7358 Intermediate Similarity NPC471512
0.7356 Intermediate Similarity NPC113946
0.7353 Intermediate Similarity NPC242000
0.7345 Intermediate Similarity NPC471124
0.733 Intermediate Similarity NPC302548
0.733 Intermediate Similarity NPC475559
0.7318 Intermediate Similarity NPC469915
0.7314 Intermediate Similarity NPC471122
0.7293 Intermediate Similarity NPC13367
0.7289 Intermediate Similarity NPC315051
0.7273 Intermediate Similarity NPC320064
0.7268 Intermediate Similarity NPC321211
0.7262 Intermediate Similarity NPC308197
0.7258 Intermediate Similarity NPC322621
0.7232 Intermediate Similarity NPC176983
0.7232 Intermediate Similarity NPC286871
0.7228 Intermediate Similarity NPC11149
0.7216 Intermediate Similarity NPC475489
0.7189 Intermediate Similarity NPC475962
0.7157 Intermediate Similarity NPC14339
0.7143 Intermediate Similarity NPC96901
0.7135 Intermediate Similarity NPC221687
0.7129 Intermediate Similarity NPC473458
0.7115 Intermediate Similarity NPC477394
0.7098 Intermediate Similarity NPC473375
0.7098 Intermediate Similarity NPC97100
0.7079 Intermediate Similarity NPC143457
0.7074 Intermediate Similarity NPC62510
0.7031 Intermediate Similarity NPC473004
0.7019 Intermediate Similarity NPC148124
0.7016 Intermediate Similarity NPC22689
0.7016 Intermediate Similarity NPC473298
0.7016 Intermediate Similarity NPC105055
0.7011 Intermediate Similarity NPC470548
0.7 Intermediate Similarity NPC473815
0.6995 Remote Similarity NPC470485
0.6995 Remote Similarity NPC475316
0.6995 Remote Similarity NPC473486
0.6983 Remote Similarity NPC474058
0.698 Remote Similarity NPC25961
0.6979 Remote Similarity NPC25401
0.6975 Remote Similarity NPC65310
0.6974 Remote Similarity NPC90967
0.6971 Remote Similarity NPC99724
0.6967 Remote Similarity NPC471513
0.6957 Remote Similarity NPC276993
0.6957 Remote Similarity NPC307640
0.6957 Remote Similarity NPC298851
0.6957 Remote Similarity NPC293255
0.6957 Remote Similarity NPC21752
0.6957 Remote Similarity NPC181138
0.6957 Remote Similarity NPC210415
0.6952 Remote Similarity NPC122886
0.6952 Remote Similarity NPC39822
0.6948 Remote Similarity NPC470631
0.6948 Remote Similarity NPC35390
0.6948 Remote Similarity NPC473781
0.6944 Remote Similarity NPC476231
0.6941 Remote Similarity NPC251439
0.6936 Remote Similarity NPC146370
0.6931 Remote Similarity NPC97584
0.6923 Remote Similarity NPC214960
0.6923 Remote Similarity NPC279527
0.6911 Remote Similarity NPC14994
0.6901 Remote Similarity NPC477397
0.6898 Remote Similarity NPC218594
0.6898 Remote Similarity NPC99043
0.6895 Remote Similarity NPC49184
0.6891 Remote Similarity NPC470483
0.6887 Remote Similarity NPC248903
0.6885 Remote Similarity NPC470971
0.6882 Remote Similarity NPC476441
0.6878 Remote Similarity NPC159963
0.6878 Remote Similarity NPC217903
0.6875 Remote Similarity NPC288110
0.6872 Remote Similarity NPC211525
0.6872 Remote Similarity NPC153694
0.6865 Remote Similarity NPC285622
0.6862 Remote Similarity NPC166169
0.6851 Remote Similarity NPC35510
0.6851 Remote Similarity NPC253667
0.685 Remote Similarity NPC207971
0.6845 Remote Similarity NPC186669
0.6842 Remote Similarity NPC302235
0.684 Remote Similarity NPC26928
0.6839 Remote Similarity NPC472100
0.6831 Remote Similarity NPC278887
0.6829 Remote Similarity NPC116178
0.6829 Remote Similarity NPC127996
0.6816 Remote Similarity NPC268077
0.6812 Remote Similarity NPC234772
0.681 Remote Similarity NPC474847
0.6808 Remote Similarity NPC470480
0.6806 Remote Similarity NPC473007
0.68 Remote Similarity NPC1464
0.6796 Remote Similarity NPC201424
0.6786 Remote Similarity NPC230313
0.6786 Remote Similarity NPC243626
0.6774 Remote Similarity NPC251212
0.6774 Remote Similarity NPC214626
0.6774 Remote Similarity NPC139085
0.6774 Remote Similarity NPC476425
0.6772 Remote Similarity NPC475685
0.6768 Remote Similarity NPC311054
0.6768 Remote Similarity NPC112752
0.6753 Remote Similarity NPC471195
0.6753 Remote Similarity NPC471196
0.6753 Remote Similarity NPC473008
0.6751 Remote Similarity NPC472539
0.6751 Remote Similarity NPC472540
0.6751 Remote Similarity NPC470787
0.675 Remote Similarity NPC176371
0.675 Remote Similarity NPC136573
0.6748 Remote Similarity NPC470481
0.6748 Remote Similarity NPC470482
0.6747 Remote Similarity NPC69496
0.6746 Remote Similarity NPC77777
0.674 Remote Similarity NPC148468
0.674 Remote Similarity NPC263709
0.674 Remote Similarity NPC97380
0.674 Remote Similarity NPC243673
0.674 Remote Similarity NPC63210
0.674 Remote Similarity NPC310403
0.6736 Remote Similarity NPC181928
0.6717 Remote Similarity NPC472541
0.6717 Remote Similarity NPC472542
0.6716 Remote Similarity NPC471436
0.6716 Remote Similarity NPC207873
0.6716 Remote Similarity NPC100573
0.6715 Remote Similarity NPC321166
0.6703 Remote Similarity NPC33507
0.6702 Remote Similarity NPC475607
0.6702 Remote Similarity NPC203202
0.6702 Remote Similarity NPC264482
0.6701 Remote Similarity NPC477998
0.6685 Remote Similarity NPC52059
0.6685 Remote Similarity NPC469479
0.6685 Remote Similarity NPC470069
0.6683 Remote Similarity NPC102008
0.6683 Remote Similarity NPC71124
0.6683 Remote Similarity NPC41216
0.6683 Remote Similarity NPC100863
0.6667 Remote Similarity NPC477395
0.6667 Remote Similarity NPC10732
0.6667 Remote Similarity NPC472118
0.6667 Remote Similarity NPC474059
0.6667 Remote Similarity NPC291173
0.6667 Remote Similarity NPC474081
0.665 Remote Similarity NPC90358
0.665 Remote Similarity NPC107828
0.6649 Remote Similarity NPC475594
0.6649 Remote Similarity NPC476428
0.6649 Remote Similarity NPC182131
0.6649 Remote Similarity NPC477462
0.6635 Remote Similarity NPC219397
0.6635 Remote Similarity NPC222046
0.6635 Remote Similarity NPC475609
0.6633 Remote Similarity NPC36607
0.6632 Remote Similarity NPC6974
0.6629 Remote Similarity NPC162104

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC129624 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.7321 Intermediate Similarity NPD2575 Approved
0.7257 Intermediate Similarity NPD5715 Clinical (unspecified phase)
0.712 Intermediate Similarity NPD3449 Discontinued
0.7073 Intermediate Similarity NPD4621 Approved
0.7073 Intermediate Similarity NPD4619 Approved
0.7006 Intermediate Similarity NPD3067 Approved
0.7 Intermediate Similarity NPD8103 Clinical (unspecified phase)
0.6994 Remote Similarity NPD5204 Approved
0.698 Remote Similarity NPD4900 Clinical (unspecified phase)
0.6979 Remote Similarity NPD6659 Phase 2
0.6975 Remote Similarity NPD2160 Approved
0.6975 Remote Similarity NPD2628 Approved
0.6975 Remote Similarity NPD2625 Approved
0.6975 Remote Similarity NPD2627 Approved
0.6975 Remote Similarity NPD2626 Approved
0.6975 Remote Similarity NPD2159 Approved
0.695 Remote Similarity NPD4901 Clinical (unspecified phase)
0.6923 Remote Similarity NPD5823 Approved
0.6911 Remote Similarity NPD6891 Phase 2
0.691 Remote Similarity NPD1663 Discontinued
0.6901 Remote Similarity NPD2578 Phase 3
0.6901 Remote Similarity NPD4168 Approved
0.689 Remote Similarity NPD3663 Approved
0.689 Remote Similarity NPD3664 Approved
0.689 Remote Similarity NPD3662 Phase 3
0.689 Remote Similarity NPD3661 Approved
0.6889 Remote Similarity NPD2996 Approved
0.686 Remote Similarity NPD2820 Phase 3
0.6851 Remote Similarity NPD2995 Approved
0.6848 Remote Similarity NPD5201 Approved
0.6848 Remote Similarity NPD4620 Approved
0.6848 Remote Similarity NPD4617 Approved
0.6848 Remote Similarity NPD5203 Approved
0.6842 Remote Similarity NPD3069 Approved
0.6839 Remote Similarity NPD3141 Discontinued
0.6833 Remote Similarity NPD7599 Phase 2
0.6802 Remote Similarity NPD2365 Approved
0.6798 Remote Similarity NPD4120 Approved
0.6798 Remote Similarity NPD4121 Phase 3
0.6796 Remote Similarity NPD7600 Phase 2
0.679 Remote Similarity NPD519 Approved
0.6786 Remote Similarity NPD6309 Approved
0.6786 Remote Similarity NPD6311 Approved
0.6786 Remote Similarity NPD6310 Approved
0.6784 Remote Similarity NPD3605 Approved
0.6784 Remote Similarity NPD3068 Approved
0.6763 Remote Similarity NPD4430 Phase 2
0.676 Remote Similarity NPD5741 Approved
0.676 Remote Similarity NPD5742 Approved
0.676 Remote Similarity NPD5743 Approved
0.6751 Remote Similarity NPD5582 Discontinued
0.6747 Remote Similarity NPD2613 Approved
0.6747 Remote Similarity NPD5202 Clinical (unspecified phase)
0.6746 Remote Similarity NPD2791 Discontinued
0.6738 Remote Similarity NPD5466 Approved
0.672 Remote Similarity NPD3824 Phase 1
0.6718 Remote Similarity NPD3808 Clinical (unspecified phase)
0.67 Remote Similarity NPD6732 Clinical (unspecified phase)
0.6686 Remote Similarity NPD5120 Approved
0.6686 Remote Similarity NPD5119 Approved
0.6686 Remote Similarity NPD5121 Approved
0.6683 Remote Similarity NPD7777 Approved
0.6683 Remote Similarity NPD7778 Approved
0.6683 Remote Similarity NPD53 Approved
0.6667 Remote Similarity NPD8389 Clinical (unspecified phase)
0.6667 Remote Similarity NPD5942 Approved
0.6667 Remote Similarity NPD5941 Approved
0.6667 Remote Similarity NPD6238 Discontinued
0.6647 Remote Similarity NPD2093 Discontinued
0.6636 Remote Similarity NPD7821 Clinical (unspecified phase)
0.6627 Remote Similarity NPD3089 Approved
0.6627 Remote Similarity NPD3615 Approved
0.6627 Remote Similarity NPD2566 Approved
0.6627 Remote Similarity NPD3088 Approved
0.6627 Remote Similarity NPD2570 Approved
0.6627 Remote Similarity NPD2571 Approved
0.6627 Remote Similarity NPD4745 Approved
0.6627 Remote Similarity NPD4746 Phase 3
0.6627 Remote Similarity NPD3087 Approved
0.6627 Remote Similarity NPD3614 Approved
0.6627 Remote Similarity NPD2573 Approved
0.6627 Remote Similarity NPD2574 Discontinued
0.6627 Remote Similarity NPD3090 Approved
0.6627 Remote Similarity NPD2572 Clinical (unspecified phase)
0.6627 Remote Similarity NPD3616 Approved
0.6607 Remote Similarity NPD4497 Clinical (unspecified phase)
0.6606 Remote Similarity NPD6320 Approved
0.6605 Remote Similarity NPD7186 Phase 3
0.6597 Remote Similarity NPD6878 Phase 2
0.6597 Remote Similarity NPD6879 Phase 2
0.6597 Remote Similarity NPD6211 Clinical (unspecified phase)
0.6593 Remote Similarity NPD7011 Discontinued
0.6573 Remote Similarity NPD7528 Approved
0.6564 Remote Similarity NPD4136 Approved
0.6564 Remote Similarity NPD4135 Approved
0.6564 Remote Similarity NPD4106 Approved
0.6559 Remote Similarity NPD2042 Clinical (unspecified phase)
0.6559 Remote Similarity NPD2041 Clinical (unspecified phase)
0.655 Remote Similarity NPD4685 Phase 3
0.655 Remote Similarity NPD4684 Phase 3
0.655 Remote Similarity NPD4686 Approved
0.655 Remote Similarity NPD7238 Clinical (unspecified phase)
0.6545 Remote Similarity NPD5900 Clinical (unspecified phase)
0.6538 Remote Similarity NPD7105 Phase 1
0.6537 Remote Similarity NPD7001 Phase 3
0.6536 Remote Similarity NPD7613 Discontinued
0.6535 Remote Similarity NPD6805 Discontinued
0.6531 Remote Similarity NPD6608 Clinical (unspecified phase)
0.6524 Remote Similarity NPD4807 Approved
0.6524 Remote Similarity NPD6457 Approved
0.6524 Remote Similarity NPD4806 Approved
0.6517 Remote Similarity NPD8165 Discontinued
0.6512 Remote Similarity NPD7820 Phase 3
0.6508 Remote Similarity NPD5997 Discontinued
0.6505 Remote Similarity NPD5430 Discontinued
0.6498 Remote Similarity NPD4086 Phase 1
0.6497 Remote Similarity NPD2564 Approved
0.6497 Remote Similarity NPD2565 Phase 2
0.6495 Remote Similarity NPD7805 Phase 3
0.6492 Remote Similarity NPD5521 Clinical (unspecified phase)
0.6489 Remote Similarity NPD5186 Approved
0.6489 Remote Similarity NPD5183 Approved
0.6485 Remote Similarity NPD5608 Approved
0.6485 Remote Similarity NPD5609 Approved
0.648 Remote Similarity NPD6483 Approved
0.648 Remote Similarity NPD4951 Discontinued
0.648 Remote Similarity NPD6484 Approved
0.6477 Remote Similarity NPD5024 Approved
0.6474 Remote Similarity NPD2670 Approved
0.6468 Remote Similarity NPD5003 Discontinued
0.6462 Remote Similarity NPD6557 Phase 2
0.6452 Remote Similarity NPD6533 Clinical (unspecified phase)
0.6449 Remote Similarity NPD3437 Discontinued
0.6448 Remote Similarity NPD6396 Clinical (unspecified phase)
0.6448 Remote Similarity NPD6395 Phase 2
0.6445 Remote Similarity NPD4897 Phase 2
0.6442 Remote Similarity NPD4105 Approved
0.6442 Remote Similarity NPD4102 Approved
0.6441 Remote Similarity NPD6676 Phase 2
0.644 Remote Similarity NPD5603 Clinical (unspecified phase)
0.644 Remote Similarity NPD8022 Clinical (unspecified phase)
0.6439 Remote Similarity NPD7205 Discontinued
0.6436 Remote Similarity NPD4668 Phase 2
0.6433 Remote Similarity NPD7086 Phase 2
0.6432 Remote Similarity NPD7569 Approved
0.6432 Remote Similarity NPD7878 Phase 2
0.6432 Remote Similarity NPD7570 Approved
0.6425 Remote Similarity NPD1802 Approved
0.6425 Remote Similarity NPD1801 Approved
0.6425 Remote Similarity NPD5899 Approved
0.6425 Remote Similarity NPD5897 Approved
0.6425 Remote Similarity NPD5898 Approved
0.6424 Remote Similarity NPD4218 Approved
0.6424 Remote Similarity NPD4215 Approved
0.6424 Remote Similarity NPD2608 Approved
0.6424 Remote Similarity NPD3131 Approved
0.6424 Remote Similarity NPD2612 Approved
0.6424 Remote Similarity NPD2609 Approved
0.6424 Remote Similarity NPD2611 Approved
0.6424 Remote Similarity NPD2610 Approved
0.6424 Remote Similarity NPD4217 Approved
0.6424 Remote Similarity NPD4216 Approved
0.6424 Remote Similarity NPD3132 Approved
0.642 Remote Similarity NPD2638 Clinical (unspecified phase)
0.6408 Remote Similarity NPD5102 Clinical (unspecified phase)
0.6407 Remote Similarity NPD6792 Phase 3
0.6406 Remote Similarity NPD6641 Approved
0.6406 Remote Similarity NPD6642 Approved
0.6404 Remote Similarity NPD5595 Clinical (unspecified phase)
0.6402 Remote Similarity NPD5306 Approved
0.6402 Remote Similarity NPD5305 Approved
0.64 Remote Similarity NPD5610 Approved
0.6395 Remote Similarity NPD5184 Approved
0.6395 Remote Similarity NPD5185 Approved
0.6395 Remote Similarity NPD5182 Approved
0.6393 Remote Similarity NPD8417 Discontinued
0.639 Remote Similarity NPD7071 Clinical (unspecified phase)
0.6389 Remote Similarity NPD5881 Clinical (unspecified phase)
0.6387 Remote Similarity NPD7449 Clinical (unspecified phase)
0.6382 Remote Similarity NPD5042 Phase 1
0.6382 Remote Similarity NPD3785 Clinical (unspecified phase)
0.6374 Remote Similarity NPD1678 Clinical (unspecified phase)
0.6359 Remote Similarity NPD2836 Approved
0.6359 Remote Similarity NPD7962 Phase 2
0.6359 Remote Similarity NPD3912 Discontinued
0.6359 Remote Similarity NPD5596 Phase 2
0.6359 Remote Similarity NPD7064 Clinical (unspecified phase)
0.635 Remote Similarity NPD5214 Phase 2
0.635 Remote Similarity NPD6665 Discontinued
0.6348 Remote Similarity NPD2387 Approved
0.6346 Remote Similarity NPD7263 Phase 2
0.6345 Remote Similarity NPD5036 Approved
0.6339 Remote Similarity NPD4846 Phase 2
0.6337 Remote Similarity NPD1595 Approved
0.6337 Remote Similarity NPD1594 Phase 3
0.6335 Remote Similarity NPD8372 Clinical (unspecified phase)
0.6327 Remote Similarity NPD7432 Phase 2
0.6324 Remote Similarity NPD7735 Clinical (unspecified phase)
0.6322 Remote Similarity NPD8172 Phase 2
0.6322 Remote Similarity NPD6817 Clinical (unspecified phase)

Structure

External Identifiers

PubChem CID   56833961
ChEMBL   CHEMBL1922995
ZINC  

Physicochemical Properties

Molecular Weight:  413.17
ALogP:  -3.5544
MLogP:  2.45
XLogP:  -0.288
# Rotatable Bonds:  14
Polar Surface Area:  171.15
# H-Bond Aceptor:  10
# H-Bond Donor:  7
# Rings:  3
# Heavy Atoms:  29

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs