Natural Product: NPC97584

Natural Product ID:  NPC97584
Common Name:   Melodinine R
IUPAC Name:  
Synonyms:   Melodinine R
Molecular Formula:   C24H28N2O4
Standard InCHIKey:  YWUGGBANBSKBFA-YABKRHPISA-N
Standard InCHI:  InChI=1S/C24H28N2O4/c1-14(27)12-16-8-9-23(15(2)28)13-17(21(29)30-3)20-24(10-11-26(16)22(23)24)18-6-4-5-7-19(18)25-20/h4-9,15-16,22,25,28H,10-13H2,1-3H3/t15-,16+,22+,23+,24+/m1/s1
Canonical SMILES:  COC(=O)C1=C2Nc3c([C@@]42[C@@H]2[C@](C1)(C=C[C@H](N2CC4)CC(=O)C)[C@H](O)C)cccc3
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO33137 melodinus suaveolens Species Apocynaceae Eukaryota PMID[22260257]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT81 Cell Line A549 Homo sapiens IC50 = 3900 nM 22365754
NPT116 Cell Line HL-60 Homo sapiens IC50 = 700 nM 22934671
NPT659 Cell Line SMMC-7721 Homo sapiens IC50 = 3300 nM 23927793
NPT660 Cell Line SW480 Homo sapiens IC50 = 1600 nM 20621475
NPT83 Cell Line MCF7 Homo sapiens IC50 = 1800 nM 9514009

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC97584 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9573 High Similarity NPC186669
0.9281 High Similarity NPC218594
0.9281 High Similarity NPC99043
0.9162 High Similarity NPC203202
0.9162 High Similarity NPC264482
0.908 High Similarity NPC293458
0.9017 High Similarity NPC14994
0.8941 High Similarity NPC6974
0.8896 High Similarity NPC123241
0.8895 High Similarity NPC159963
0.8798 High Similarity NPC87714
0.8667 High Similarity NPC61013
0.8652 High Similarity NPC25401
0.8639 High Similarity NPC224970
0.8639 High Similarity NPC167724
0.8639 High Similarity NPC223595
0.8563 High Similarity NPC248117
0.8503 High Similarity NPC193410
0.8444 Intermediate Similarity NPC203628
0.8393 Intermediate Similarity NPC36495
0.8389 Intermediate Similarity NPC5630
0.8333 Intermediate Similarity NPC329338
0.8333 Intermediate Similarity NPC469726
0.8289 Intermediate Similarity NPC1464
0.8268 Intermediate Similarity NPC52262
0.8261 Intermediate Similarity NPC303214
0.8235 Intermediate Similarity NPC232600
0.8196 Intermediate Similarity NPC189661
0.8158 Intermediate Similarity NPC246140
0.8158 Intermediate Similarity NPC195787
0.8142 Intermediate Similarity NPC22476
0.7977 Intermediate Similarity NPC282339
0.7977 Intermediate Similarity NPC99632
0.7966 Intermediate Similarity NPC276993
0.7966 Intermediate Similarity NPC298851
0.7966 Intermediate Similarity NPC293255
0.7966 Intermediate Similarity NPC181138
0.7966 Intermediate Similarity NPC21752
0.7966 Intermediate Similarity NPC210415
0.7919 Intermediate Similarity NPC309531
0.7919 Intermediate Similarity NPC472102
0.7884 Intermediate Similarity NPC218733
0.7884 Intermediate Similarity NPC138615
0.7884 Intermediate Similarity NPC132874
0.7884 Intermediate Similarity NPC265642
0.7874 Intermediate Similarity NPC472117
0.7841 Intermediate Similarity NPC279527
0.7841 Intermediate Similarity NPC214960
0.7816 Intermediate Similarity NPC474058
0.7771 Intermediate Similarity NPC472101
0.7771 Intermediate Similarity NPC472120
0.7762 Intermediate Similarity NPC151171
0.7732 Intermediate Similarity NPC475147
0.7727 Intermediate Similarity NPC119722
0.7714 Intermediate Similarity NPC225319
0.7711 Intermediate Similarity NPC77777
0.7685 Intermediate Similarity NPC128476
0.7654 Intermediate Similarity NPC472118
0.7606 Intermediate Similarity NPC22689
0.7606 Intermediate Similarity NPC105055
0.7592 Intermediate Similarity NPC473375
0.7592 Intermediate Similarity NPC97100
0.7584 Intermediate Similarity NPC470069
0.7584 Intermediate Similarity NPC52059
0.7584 Intermediate Similarity NPC472106
0.7577 Intermediate Similarity NPC471512
0.7576 Intermediate Similarity NPC475133
0.7574 Intermediate Similarity NPC195636
0.7573 Intermediate Similarity NPC19175
0.7552 Intermediate Similarity NPC90967
0.75 Intermediate Similarity NPC113946
0.7488 Intermediate Similarity NPC469722
0.7488 Intermediate Similarity NPC126556
0.7485 Intermediate Similarity NPC264589
0.7473 Intermediate Similarity NPC139085
0.7473 Intermediate Similarity NPC214626
0.7473 Intermediate Similarity NPC251212
0.7472 Intermediate Similarity NPC472121
0.7463 Intermediate Similarity NPC476069
0.7458 Intermediate Similarity NPC243673
0.7458 Intermediate Similarity NPC310403
0.7458 Intermediate Similarity NPC148468
0.7458 Intermediate Similarity NPC263709
0.7458 Intermediate Similarity NPC63210
0.7458 Intermediate Similarity NPC97380
0.745 Intermediate Similarity NPC269449
0.743 Intermediate Similarity NPC301501
0.7423 Intermediate Similarity NPC100863
0.7414 Intermediate Similarity NPC475763
0.7407 Intermediate Similarity NPC181928
0.7398 Intermediate Similarity NPC469732
0.7391 Intermediate Similarity NPC476441
0.7358 Intermediate Similarity NPC221687
0.7351 Intermediate Similarity NPC260075
0.7346 Intermediate Similarity NPC223242
0.7339 Intermediate Similarity NPC329932
0.733 Intermediate Similarity NPC473298
0.7327 Intermediate Similarity NPC469452
0.7327 Intermediate Similarity NPC469451
0.7326 Intermediate Similarity NPC475962
0.7315 Intermediate Similarity NPC469450
0.7314 Intermediate Similarity NPC243756
0.7303 Intermediate Similarity NPC211525
0.7303 Intermediate Similarity NPC153694
0.7291 Intermediate Similarity NPC127996
0.7288 Intermediate Similarity NPC161827
0.7286 Intermediate Similarity NPC329833
0.7283 Intermediate Similarity NPC96901
0.7277 Intermediate Similarity NPC139373
0.7273 Intermediate Similarity NPC122106
0.7268 Intermediate Similarity NPC34717
0.7259 Intermediate Similarity NPC475489
0.7256 Intermediate Similarity NPC291173
0.7238 Intermediate Similarity NPC313757
0.7238 Intermediate Similarity NPC115588
0.7234 Intermediate Similarity NPC476428
0.7232 Intermediate Similarity NPC478076
0.7222 Intermediate Similarity NPC201424
0.7216 Intermediate Similarity NPC154602
0.7211 Intermediate Similarity NPC49184
0.7189 Intermediate Similarity NPC476425
0.7188 Intermediate Similarity NPC316405
0.7182 Intermediate Similarity NPC286871
0.7175 Intermediate Similarity NPC285381
0.717 Intermediate Similarity NPC473458
0.7168 Intermediate Similarity NPC190945
0.7158 Intermediate Similarity NPC472115
0.7158 Intermediate Similarity NPC472114
0.7143 Intermediate Similarity NPC131977
0.7128 Intermediate Similarity NPC475094
0.7127 Intermediate Similarity NPC315368
0.7119 Intermediate Similarity NPC314223
0.7107 Intermediate Similarity NPC162440
0.7097 Intermediate Similarity NPC285622
0.7071 Intermediate Similarity NPC311054
0.7071 Intermediate Similarity NPC112752
0.7062 Intermediate Similarity NPC473329
0.7062 Intermediate Similarity NPC474059
0.7056 Intermediate Similarity NPC469536
0.7043 Intermediate Similarity NPC292265
0.7035 Intermediate Similarity NPC329982
0.7031 Intermediate Similarity NPC472209
0.7027 Intermediate Similarity NPC470971
0.7019 Intermediate Similarity NPC234772
0.7015 Intermediate Similarity NPC475223
0.7009 Intermediate Similarity NPC471513
0.7005 Intermediate Similarity NPC198205
0.7005 Intermediate Similarity NPC21483
0.7 Intermediate Similarity NPC288110
0.7 Intermediate Similarity NPC254240
0.7 Intermediate Similarity NPC222046
0.7 Intermediate Similarity NPC312870
0.7 Intermediate Similarity NPC199851
0.7 Intermediate Similarity NPC294909
0.7 Intermediate Similarity NPC128265
0.6995 Remote Similarity NPC176983
0.6989 Remote Similarity NPC469915
0.6984 Remote Similarity NPC476326
0.698 Remote Similarity NPC475448
0.698 Remote Similarity NPC246983
0.6971 Remote Similarity NPC472103
0.6968 Remote Similarity NPC475097
0.6966 Remote Similarity NPC318086
0.6965 Remote Similarity NPC136573
0.6965 Remote Similarity NPC176371
0.6961 Remote Similarity NPC478075
0.6961 Remote Similarity NPC36836
0.6961 Remote Similarity NPC63370
0.6959 Remote Similarity NPC475720
0.6959 Remote Similarity NPC474192
0.695 Remote Similarity NPC90358
0.695 Remote Similarity NPC107828
0.6947 Remote Similarity NPC321211
0.6943 Remote Similarity NPC322621
0.6943 Remote Similarity NPC469460
0.6936 Remote Similarity NPC315051
0.6936 Remote Similarity NPC130251
0.6935 Remote Similarity NPC198390
0.6931 Remote Similarity NPC129624
0.6927 Remote Similarity NPC473105
0.6927 Remote Similarity NPC285192
0.6927 Remote Similarity NPC477159
0.6923 Remote Similarity NPC284706
0.6912 Remote Similarity NPC477161
0.6911 Remote Similarity NPC11149
0.691 Remote Similarity NPC242000
0.6905 Remote Similarity NPC471197
0.6902 Remote Similarity NPC469741
0.6897 Remote Similarity NPC301760
0.6893 Remote Similarity NPC472100
0.6885 Remote Similarity NPC471122
0.6882 Remote Similarity NPC278887
0.6872 Remote Similarity NPC471198
0.6868 Remote Similarity NPC29285
0.6862 Remote Similarity NPC318183
0.6847 Remote Similarity NPC137589
0.6847 Remote Similarity NPC474077
0.6847 Remote Similarity NPC475816
0.6839 Remote Similarity NPC470317
0.6837 Remote Similarity NPC122886

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC97584 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.7268 Intermediate Similarity NPD3376 Clinical (unspecified phase)
0.7243 Intermediate Similarity NPD3422 Phase 3
0.7243 Intermediate Similarity NPD3423 Phase 2
0.7184 Intermediate Similarity NPD4041 Approved
0.7175 Intermediate Similarity NPD3399 Approved
0.7168 Intermediate Similarity NPD2435 Approved
0.712 Intermediate Similarity NPD2037 Approved
0.7107 Intermediate Similarity NPD3828 Approved
0.709 Intermediate Similarity NPD4330 Approved
0.709 Intermediate Similarity NPD4329 Approved
0.7062 Intermediate Similarity NPD2737 Clinical (unspecified phase)
0.7053 Intermediate Similarity NPD3470 Approved
0.7053 Intermediate Similarity NPD3471 Approved
0.7043 Intermediate Similarity NPD2432 Approved
0.7043 Intermediate Similarity NPD2431 Approved
0.7037 Intermediate Similarity NPD3782 Discontinued
0.7037 Intermediate Similarity NPD2869 Clinical (unspecified phase)
0.7033 Intermediate Similarity NPD7244 Discontinued
0.7027 Intermediate Similarity NPD2455 Approved
0.7027 Intermediate Similarity NPD2454 Approved
0.7027 Intermediate Similarity NPD2404 Discontinued
0.7021 Intermediate Similarity NPD3978 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD6805 Discontinued
0.7 Intermediate Similarity NPD4501 Approved
0.7 Intermediate Similarity NPD4500 Approved
0.6984 Remote Similarity NPD3792 Approved
0.6978 Remote Similarity NPD7114 Clinical (unspecified phase)
0.6968 Remote Similarity NPD5466 Approved
0.6961 Remote Similarity NPD6571 Approved
0.6961 Remote Similarity NPD6570 Approved
0.6949 Remote Similarity NPD1802 Approved
0.6949 Remote Similarity NPD1801 Approved
0.694 Remote Similarity NPD2506 Approved
0.6939 Remote Similarity NPD5504 Discontinued
0.6919 Remote Similarity NPD7035 Approved
0.6919 Remote Similarity NPD7036 Phase 3
0.691 Remote Similarity NPD7528 Approved
0.6908 Remote Similarity NPD4493 Discontinued
0.6897 Remote Similarity NPD7205 Discontinued
0.6895 Remote Similarity NPD8006 Clinical (unspecified phase)
0.6882 Remote Similarity NPD8003 Clinical (unspecified phase)
0.6882 Remote Similarity NPD8002 Clinical (unspecified phase)
0.6879 Remote Similarity NPD3170 Approved
0.6872 Remote Similarity NPD8103 Clinical (unspecified phase)
0.6851 Remote Similarity NPD4121 Phase 3
0.6851 Remote Similarity NPD4120 Approved
0.6839 Remote Similarity NPD8658 Clinical (unspecified phase)
0.6839 Remote Similarity NPD8281 Discontinued
0.6825 Remote Similarity NPD3377 Discontinued
0.6813 Remote Similarity NPD5742 Approved
0.6813 Remote Similarity NPD5743 Approved
0.6813 Remote Similarity NPD5741 Approved
0.6802 Remote Similarity NPD4499 Approved
0.6798 Remote Similarity NPD4607 Approved
0.6796 Remote Similarity NPD2948 Discontinued
0.6793 Remote Similarity NPD2427 Approved
0.6789 Remote Similarity NPD5919 Clinical (unspecified phase)
0.6769 Remote Similarity NPD6557 Phase 2
0.6763 Remote Similarity NPD4082 Approved
0.6762 Remote Similarity NPD4455 Discontinued
0.6761 Remote Similarity NPD2923 Approved
0.676 Remote Similarity NPD3352 Approved
0.6755 Remote Similarity NPD3468 Approved
0.6754 Remote Similarity NPD2083 Clinical (unspecified phase)
0.6745 Remote Similarity NPD3940 Clinical (unspecified phase)
0.6742 Remote Similarity NPD6185 Discontinued
0.6742 Remote Similarity NPD7295 Approved
0.6738 Remote Similarity NPD5430 Discontinued
0.6724 Remote Similarity NPD2670 Approved
0.6722 Remote Similarity NPD4888 Discontinued
0.6718 Remote Similarity NPD4412 Phase 2
0.6715 Remote Similarity NPD4596 Phase 1
0.6714 Remote Similarity NPD3888 Discontinued
0.6714 Remote Similarity NPD4494 Approved
0.6714 Remote Similarity NPD4492 Approved
0.6701 Remote Similarity NPD6891 Phase 2
0.6699 Remote Similarity NPD3893 Discontinued
0.6685 Remote Similarity NPD7487 Discontinued
0.6685 Remote Similarity NPD4513 Discontinued
0.6684 Remote Similarity NPD7775 Approved
0.6684 Remote Similarity NPD8007 Approved
0.6684 Remote Similarity NPD8008 Approved
0.6667 Remote Similarity NPD4311 Approved
0.6667 Remote Similarity NPD7600 Phase 2
0.6667 Remote Similarity NPD6758 Approved
0.6667 Remote Similarity NPD7962 Phase 2
0.6651 Remote Similarity NPD5433 Clinical (unspecified phase)
0.665 Remote Similarity NPD5937 Approved
0.6649 Remote Similarity NPD5997 Discontinued
0.6649 Remote Similarity NPD7591 Clinical (unspecified phase)
0.6648 Remote Similarity NPD7606 Phase 3
0.6648 Remote Similarity NPD6017 Discontinued
0.6647 Remote Similarity NPD5184 Approved
0.6647 Remote Similarity NPD5182 Approved
0.6647 Remote Similarity NPD5185 Approved
0.6636 Remote Similarity NPD7878 Phase 2
0.6633 Remote Similarity NPD3436 Approved
0.663 Remote Similarity NPD5942 Approved
0.663 Remote Similarity NPD5941 Approved
0.6629 Remote Similarity NPD3864 Clinical (unspecified phase)
0.6621 Remote Similarity NPD6292 Clinical (unspecified phase)
0.6615 Remote Similarity NPD7940 Phase 3
0.6603 Remote Similarity NPD3472 Approved
0.6603 Remote Similarity NPD4022 Approved
0.6603 Remote Similarity NPD4859 Phase 1
0.6601 Remote Similarity NPD7238 Clinical (unspecified phase)
0.66 Remote Similarity NPD3884 Discontinued
0.66 Remote Similarity NPD3304 Phase 2
0.66 Remote Similarity NPD6659 Phase 2
0.6599 Remote Similarity NPD2397 Discontinued
0.6595 Remote Similarity NPD2836 Approved
0.6595 Remote Similarity NPD1663 Discontinued
0.6591 Remote Similarity NPD1110 Approved
0.6591 Remote Similarity NPD1109 Approved
0.6585 Remote Similarity NPD4601 Approved
0.6585 Remote Similarity NPD4600 Approved
0.6576 Remote Similarity NPD5086 Approved
0.6575 Remote Similarity NPD7478 Approved
0.6569 Remote Similarity NPD4668 Phase 2
0.655 Remote Similarity NPD995 Clinical (unspecified phase)
0.655 Remote Similarity NPD5928 Phase 1
0.6545 Remote Similarity NPD5186 Approved
0.6545 Remote Similarity NPD5183 Approved
0.654 Remote Similarity NPD3372 Discontinued
0.6538 Remote Similarity NPD3947 Discontinued
0.6538 Remote Similarity NPD4456 Clinical (unspecified phase)
0.6536 Remote Similarity NPD7082 Approved
0.6536 Remote Similarity NPD2820 Phase 3
0.6536 Remote Similarity NPD5024 Approved
0.6536 Remote Similarity NPD4430 Phase 2
0.6536 Remote Similarity NPD1625 Approved
0.6531 Remote Similarity NPD3435 Discontinued
0.6528 Remote Similarity NPD5496 Approved
0.6517 Remote Similarity NPD3625 Discontinued
0.6517 Remote Similarity NPD5042 Phase 1
0.6514 Remote Similarity NPD2791 Discontinued
0.6514 Remote Similarity NPD2470 Clinical (unspecified phase)
0.6514 Remote Similarity NPD6995 Phase 1
0.6513 Remote Similarity NPD7881 Approved
0.651 Remote Similarity NPD5727 Clinical (unspecified phase)
0.6505 Remote Similarity NPD7105 Phase 1
0.65 Remote Similarity NPD7186 Phase 3
0.65 Remote Similarity NPD7259 Approved
0.6498 Remote Similarity NPD3783 Clinical (unspecified phase)
0.6495 Remote Similarity NPD3948 Discontinued
0.6492 Remote Similarity NPD2844 Phase 3
0.6488 Remote Similarity NPD5856 Discontinued
0.6486 Remote Similarity NPD2790 Discontinued
0.648 Remote Similarity NPD2365 Approved
0.6479 Remote Similarity NPD6657 Clinical (unspecified phase)
0.6476 Remote Similarity NPD6518 Discontinued
0.6471 Remote Similarity NPD8630 Approved
0.6467 Remote Similarity NPD7670 Clinical (unspecified phase)
0.6462 Remote Similarity NPD5860 Discontinued
0.6462 Remote Similarity NPD5498 Phase 2
0.6459 Remote Similarity NPD8283 Approved
0.6459 Remote Similarity NPD56 Approved
0.6459 Remote Similarity NPD5901 Discontinued
0.6459 Remote Similarity NPD8282 Approved
0.6452 Remote Similarity NPD6770 Approved
0.6448 Remote Similarity NPD4161 Discontinued
0.6445 Remote Similarity NPD2509 Approved
0.6445 Remote Similarity NPD2510 Approved
0.6445 Remote Similarity NPD8423 Phase 2
0.6445 Remote Similarity NPD8399 Phase 1
0.6442 Remote Similarity NPD5721 Clinical (unspecified phase)
0.6436 Remote Similarity NPD7599 Phase 2
0.6436 Remote Similarity NPD4370 Phase 3
0.6432 Remote Similarity NPD7470 Discontinued
0.6432 Remote Similarity NPD1945 Phase 1
0.6425 Remote Similarity NPD1165 Clinical (unspecified phase)
0.6422 Remote Similarity NPD7256 Discontinued
0.6421 Remote Similarity NPD3790 Phase 2
0.6415 Remote Similarity NPD4506 Discontinued
0.6413 Remote Similarity NPD1405 Approved
0.6413 Remote Similarity NPD6199 Discontinued
0.6411 Remote Similarity NPD6176 Phase 1
0.641 Remote Similarity NPD8022 Clinical (unspecified phase)
0.6409 Remote Similarity NPD2387 Approved
0.6408 Remote Similarity NPD53 Approved
0.6408 Remote Similarity NPD7777 Approved
0.6408 Remote Similarity NPD7778 Approved
0.6408 Remote Similarity NPD7946 Pre-registration
0.6404 Remote Similarity NPD1626 Approved
0.6396 Remote Similarity NPD5897 Approved
0.6396 Remote Similarity NPD3989 Phase 3
0.6396 Remote Similarity NPD6878 Phase 2
0.6396 Remote Similarity NPD5898 Approved
0.6396 Remote Similarity NPD5899 Approved
0.6396 Remote Similarity NPD6879 Phase 2
0.6394 Remote Similarity NPD7476 Discontinued
0.6394 Remote Similarity NPD3314 Discontinued
0.6394 Remote Similarity NPD6238 Discontinued
0.639 Remote Similarity NPD5411 Discontinued
0.6389 Remote Similarity NPD6414 Clinical (unspecified phase)
0.6379 Remote Similarity NPD1070 Approved
0.6379 Remote Similarity NPD1069 Approved
0.6377 Remote Similarity NPD6249 Phase 2
0.6377 Remote Similarity NPD6248 Phase 2
0.6373 Remote Similarity NPD7795 Phase 2

Structure

External Identifiers

PubChem CID   57333162
ChEMBL   CHEMBL2011508
ZINC  

Physicochemical Properties

Molecular Weight:  408.20
ALogP:  -0.8983
MLogP:  3.44
XLogP:  2.107
# Rotatable Bonds:  9
Polar Surface Area:  78.87
# H-Bond Aceptor:  6
# H-Bond Donor:  2
# Rings:  5
# Heavy Atoms:  30

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
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