Structure

Physi-Chem Properties

Molecular Weight:  410.32
Volume:  477.493
LogP:  8.4
LogD:  5.751
LogS:  -6.126
# Rotatable Bonds:  9
TPSA:  29.46
# H-Bond Aceptor:  2
# H-Bond Donor:  1
# Rings:  2
# Heavy Atoms:  2

MedChem Properties

QED Drug-Likeness Score:  0.415
Synthetic Accessibility Score:  3.618
Fsp3:  0.571
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.9
MDCK Permeability:  1.5073383110575378e-05
Pgp-inhibitor:  0.036
Pgp-substrate:  0.006
Human Intestinal Absorption (HIA):  0.01
20% Bioavailability (F20%):  0.994
30% Bioavailability (F30%):  0.993

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.789
Plasma Protein Binding (PPB):  99.4114990234375%
Volume Distribution (VD):  3.403
Pgp-substrate:  1.3175126314163208%

ADMET: Metabolism

CYP1A2-inhibitor:  0.238
CYP1A2-substrate:  0.242
CYP2C19-inhibitor:  0.292
CYP2C19-substrate:  0.672
CYP2C9-inhibitor:  0.309
CYP2C9-substrate:  0.952
CYP2D6-inhibitor:  0.829
CYP2D6-substrate:  0.889
CYP3A4-inhibitor:  0.547
CYP3A4-substrate:  0.135

ADMET: Excretion

Clearance (CL):  6.347
Half-life (T1/2):  0.07

ADMET: Toxicity

hERG Blockers:  0.039
Human Hepatotoxicity (H-HT):  0.521
Drug-inuced Liver Injury (DILI):  0.01
AMES Toxicity:  0.002
Rat Oral Acute Toxicity:  0.004
Maximum Recommended Daily Dose:  0.641
Skin Sensitization:  0.943
Carcinogencity:  0.021
Eye Corrosion:  0.005
Eye Irritation:  0.851
Respiratory Toxicity:  0.01

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General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC45663

Natural Product ID:  NPC45663
Common Name*:   Gamma-Tocotrienol
IUPAC Name:   (2R)-2,7,8-trimethyl-2-[(3E,7E)-4,8,12-trimethyltrideca-3,7,11-trienyl]-3,4-dihydrochromen-6-ol
Synonyms:   Gamma-Tocotrienol
Standard InCHIKey:  OTXNTMVVOOBZCV-WAZJVIJMSA-N
Standard InCHI:  InChI=1S/C28H42O2/c1-20(2)11-8-12-21(3)13-9-14-22(4)15-10-17-28(7)18-16-25-19-26(29)23(5)24(6)27(25)30-28/h11,13,15,19,29H,8-10,12,14,16-18H2,1-7H3/b21-13+,22-15+/t28-/m1/s1
SMILES:  CC(=CCC/C(=C/CC/C(=C/CC[C@]1(C)CCc2cc(c(C)c(C)c2O1)O)/C)/C)C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL120697
PubChem CID:   5282349
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001534] Quinone and hydroquinone lipids
          • [CHEMONTID:0001546] Vitamin E compounds
            • [CHEMONTID:0002092] Tocotrienols

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.jfca.2005.08.001]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. seed n.a. PMID[11540412]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. leaf n.a. PMID[14727919]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. root n.a. PMID[14727919]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. xylem n.a. PMID[14727919]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. bark n.a. PMID[14727919]
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[15286289]
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[18460139]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. pericarp n.a. PMID[18496782]
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. seed n.a. PMID[20947202]
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[24253552]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. n.a. n.a. PMID[25466114]
NPO18674 Juglans regia Species Juglandaceae Eukaryota Flowers n.a. n.a. PMID[28737396]
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[8987503]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. leaf n.a. Database[Article]
NPO18674 Juglans regia Species Juglandaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO18674 Juglans regia Species Juglandaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota Root n.a. n.a. Database[FooDB]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO18674 Juglans regia Species Juglandaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota Shoot n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota Sprout Seedling n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota Stem n.a. n.a. Database[FooDB]
NPO18674 Juglans regia Species Juglandaceae Eukaryota Stem Bark n.a. n.a. Database[FooDB]
NPO18674 Juglans regia Species Juglandaceae Eukaryota Testa n.a. n.a. Database[FooDB]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota Tissue Culture n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota Wax n.a. n.a. Database[FooDB]
NPO18674 Juglans regia Species Juglandaceae Eukaryota Embryo n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11043 Pisum sativum Species Fabaceae Eukaryota Seeds n.a. Database[Phenol-Explorer]
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference
NPO11043 NPC45663 n.a. n.a. 0.05 n.a. n.a. mg/100g of FW DOI[10.1016/j.jfca.2005.08.001]
NPO5353 NPC45663 n.a. n.a. 0.21 n.a. n.a. mg/100g of FW DOI[10.1016/j.jfca.2005.08.001]

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT65 Cell Line HepG2 Homo sapiens Inhibition = 78.0 % PMID[465071]
NPT65 Cell Line HepG2 Homo sapiens Inhibition = 64.0 % PMID[465071]
NPT83 Cell Line MCF7 Homo sapiens IC50 = 11400.0 nM PMID[465072]
NPT82 Cell Line MDA-MB-231 Homo sapiens IC50 > 10000.0 nM PMID[465072]
NPT784 Cell Line MDA-MB-468 Homo sapiens Activity = 108.15 % PMID[465075]
NPT396 Cell Line T47D Homo sapiens Activity = 82.5 % PMID[465075]
NPT457 Cell Line BT-549 Homo sapiens Activity = 140.98 % PMID[465075]
NPT82 Cell Line MDA-MB-231 Homo sapiens Activity = 108.35 % PMID[465075]
NPT83 Cell Line MCF7 Homo sapiens Activity = 84.14 % PMID[465075]
NPT90 Cell Line DU-145 Homo sapiens Activity = 99.66 % PMID[465075]
NPT306 Cell Line PC-3 Homo sapiens Activity = 96.6 % PMID[465075]
NPT371 Cell Line UO-31 Homo sapiens Activity = 64.07 % PMID[465075]
NPT384 Cell Line TK-10 Homo sapiens Activity = 122.31 % PMID[465075]
NPT368 Cell Line SN12C Homo sapiens Activity = 95.95 % PMID[465075]
NPT406 Cell Line RXF 393 Homo sapiens Activity = 84.11 % PMID[465075]
NPT308 Cell Line CAKI-1 Homo sapiens Activity = 89.5 % PMID[465075]
NPT369 Cell Line ACHN Homo sapiens Activity = 100.38 % PMID[465075]
NPT401 Cell Line 786-0 Homo sapiens Activity = 114.48 % PMID[465075]
NPT381 Cell Line OVCAR-8 Homo sapiens Activity = 112.34 % PMID[465075]
NPT382 Cell Line OVCAR-5 Homo sapiens Activity = 113.76 % PMID[465075]
NPT456 Cell Line OVCAR-4 Homo sapiens Activity = 101.56 % PMID[465075]
NPT377 Cell Line OVCAR-3 Homo sapiens Activity = 110.11 % PMID[465075]
NPT458 Cell Line IGROV-1 Homo sapiens Activity = 96.27 % PMID[465075]
NPT398 Cell Line UACC-62 Homo sapiens Activity = 107.91 % PMID[465075]
NPT403 Cell Line UACC-257 Homo sapiens Activity = 122.52 % PMID[465075]
NPT373 Cell Line SK-MEL-5 Homo sapiens Activity = 99.06 % PMID[465075]
NPT170 Cell Line SK-MEL-28 Homo sapiens Activity = 97.29 % PMID[465075]
NPT147 Cell Line SK-MEL-2 Homo sapiens Activity = 91.27 % PMID[465075]
NPT400 Cell Line MDA-MB-435 Homo sapiens Activity = 102.25 % PMID[465075]
NPT387 Cell Line M14 Homo sapiens Activity = 108.68 % PMID[465075]
NPT375 Cell Line Malme-3M Homo sapiens Activity = 92.45 % PMID[465075]
NPT390 Cell Line LOX IMVI Homo sapiens Activity = 89.99 % PMID[465075]
NPT380 Cell Line U-251 Homo sapiens Activity = 101.69 % PMID[465075]
NPT392 Cell Line SNB-75 Homo sapiens Activity = 84.3 % PMID[465075]
NPT383 Cell Line SNB-19 Homo sapiens Activity = 113.81 % PMID[465075]
NPT374 Cell Line SF-539 Homo sapiens Activity = 100.67 % PMID[465075]
NPT399 Cell Line SF-295 Homo sapiens Activity = 105.18 % PMID[465075]
NPT395 Cell Line SF-268 Homo sapiens Activity = 107.72 % PMID[465075]
NPT323 Cell Line SW-620 Homo sapiens Activity = 109.84 % PMID[465075]
NPT386 Cell Line KM12 Homo sapiens Activity = 106.82 % PMID[465075]
NPT139 Cell Line HT-29 Homo sapiens Activity = 96.13 % PMID[465075]
NPT148 Cell Line HCT-15 Homo sapiens Activity = 101.8 % PMID[465075]
NPT393 Cell Line HCT-116 Homo sapiens Activity = 109.37 % PMID[465075]
NPT407 Cell Line COLO 205 Homo sapiens Activity = 94.39 % PMID[465075]
NPT455 Cell Line NCI-H522 Homo sapiens Activity = 68.75 % PMID[465075]
NPT397 Cell Line NCI-H460 Homo sapiens Activity = 105.0 % PMID[465075]
NPT388 Cell Line NCI-H322M Homo sapiens Activity = 95.17 % PMID[465075]
NPT370 Cell Line NCI-H23 Homo sapiens Activity = 92.82 % PMID[465075]
NPT405 Cell Line NCI-H226 Homo sapiens Activity = 90.78 % PMID[465075]
NPT372 Cell Line HOP-92 Homo sapiens Activity = 92.04 % PMID[465075]
NPT379 Cell Line HOP-62 Homo sapiens Activity = 107.97 % PMID[465075]
NPT81 Cell Line A549 Homo sapiens Activity = 104.64 % PMID[465075]
NPT385 Cell Line SR Homo sapiens Activity = 85.5 % PMID[465075]
NPT389 Cell Line RPMI-8226 Homo sapiens Activity = 77.95 % PMID[465075]
NPT112 Cell Line MOLT-4 Homo sapiens Activity = 84.35 % PMID[465075]
NPT111 Cell Line K562 Homo sapiens Activity = 85.02 % PMID[465075]
NPT116 Cell Line HL-60 Homo sapiens Activity = 86.47 % PMID[465075]
NPT404 Cell Line CCRF-CEM Homo sapiens Activity = 83.98 % PMID[465075]
NPT82 Cell Line MDA-MB-231 Homo sapiens IC50 > 40000.0 nM PMID[465075]
NPT2257 Cell Line MCF-10A Homo sapiens Ratio IC50 = 1.1 n.a. PMID[465075]
NPT2257 Cell Line MCF-10A Homo sapiens IC50 = 4400.0 nM PMID[465075]
NPT82 Cell Line MDA-MB-231 Homo sapiens IC50 = 9400.0 nM PMID[465075]
NPT83 Cell Line MCF7 Homo sapiens IC50 = 7100.0 nM PMID[465075]
NPT29 Organism Rattus norvegicus Rattus norvegicus Inhibition = 48.0 % PMID[465071]
NPT29 Organism Rattus norvegicus Rattus norvegicus Inhibition = 60.0 % PMID[465071]
NPT29 Organism Rattus norvegicus Rattus norvegicus IC50 = 270.0 ug.mL-1 PMID[465071]
NPT29 Organism Rattus norvegicus Rattus norvegicus Inhibition = 28.0 % PMID[465071]
NPT29 Organism Rattus norvegicus Rattus norvegicus Inhibition = 34.0 % PMID[465071]
NPT29 Organism Rattus norvegicus Rattus norvegicus Inhibition = 61.0 % PMID[465071]
NPT29 Organism Rattus norvegicus Rattus norvegicus IC50 = 360.0 ug.mL-1 PMID[465071]
NPT29 Organism Rattus norvegicus Rattus norvegicus Inhibition = 64.0 % PMID[465071]
NPT673 Organism Gallus gallus Gallus gallus Total cholesterol = 151.0 mg 100ml-1 PMID[465071]
NPT673 Organism Gallus gallus Gallus gallus LDL cholesterol = 41.0 mg 100ml-1 PMID[465071]
NPT673 Organism Gallus gallus Gallus gallus HDL cholesterol = 102.0 mg 100ml-1 PMID[465071]
NPT673 Organism Gallus gallus Gallus gallus HMGR activity = 494.0 n.a. PMID[465071]
NPT673 Organism Gallus gallus Gallus gallus Total cholesterol = 141.0 mg 100ml-1 PMID[465071]
NPT673 Organism Gallus gallus Gallus gallus LDL cholesterol = 42.0 mg 100ml-1 PMID[465071]
NPT673 Organism Gallus gallus Gallus gallus HDL cholesterol = 97.0 mg 100ml-1 PMID[465071]
NPT673 Organism Gallus gallus Gallus gallus HMGR activity = 606.0 n.a. PMID[465071]
NPT673 Organism Gallus gallus Gallus gallus Total cholesterol = 132.0 mg 100ml-1 PMID[465071]
NPT673 Organism Gallus gallus Gallus gallus LDL cholesterol = 35.0 mg 100ml-1 PMID[465071]
NPT673 Organism Gallus gallus Gallus gallus HDL cholesterol = 95.0 mg 100ml-1 PMID[465071]
NPT673 Organism Gallus gallus Gallus gallus HMGR activity = 561.0 n.a. PMID[465071]
NPT673 Organism Gallus gallus Gallus gallus Total cholesterol = 125.0 mg 100ml-1 PMID[465071]
NPT673 Organism Gallus gallus Gallus gallus LDL cholesterol = 29.0 mg 100ml-1 PMID[465071]
NPT673 Organism Gallus gallus Gallus gallus HDL cholesterol = 94.0 mg 100ml-1 PMID[465071]
NPT673 Organism Gallus gallus Gallus gallus HMGR activity = 546.0 n.a. PMID[465071]
NPT2 Others Unspecified Inhibition = 50.0 % PMID[465072]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 4000.0 nM PMID[465073]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Activity = 101.91 % PMID[465075]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Activity = 96.88 % PMID[465075]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Activity = 114.7 % PMID[465075]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Activity = 110.37 % PMID[465075]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC45663 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9912 High Similarity NPC48623
0.9912 High Similarity NPC168707
0.9735 High Similarity NPC139047
0.9558 High Similarity NPC69539
0.9492 High Similarity NPC61685
0.9474 High Similarity NPC238176
0.9474 High Similarity NPC187993
0.9386 High Similarity NPC236070
0.9386 High Similarity NPC242580
0.9386 High Similarity NPC126759
0.931 High Similarity NPC32152
0.9231 High Similarity NPC474131
0.9231 High Similarity NPC232295
0.9145 High Similarity NPC471449
0.9145 High Similarity NPC51341
0.913 High Similarity NPC473718
0.9008 High Similarity NPC248557
0.9 High Similarity NPC46586
0.9 High Similarity NPC204535
0.8992 High Similarity NPC129176
0.8926 High Similarity NPC474130
0.8871 High Similarity NPC47288
0.887 High Similarity NPC474920
0.8852 High Similarity NPC474237
0.8852 High Similarity NPC190086
0.8852 High Similarity NPC276962
0.8833 High Similarity NPC212559
0.874 High Similarity NPC27578
0.874 High Similarity NPC289624
0.872 High Similarity NPC81261
0.8707 High Similarity NPC98372
0.8699 High Similarity NPC147896
0.8689 High Similarity NPC302211
0.8678 High Similarity NPC277798
0.8678 High Similarity NPC100108
0.8661 High Similarity NPC153019
0.8661 High Similarity NPC160623
0.8651 High Similarity NPC16577
0.8644 High Similarity NPC283169
0.8621 High Similarity NPC469912
0.8618 High Similarity NPC261992
0.8607 High Similarity NPC475839
0.8583 High Similarity NPC325003
0.8583 High Similarity NPC196621
0.8583 High Similarity NPC283616
0.8571 High Similarity NPC176590
0.8537 High Similarity NPC188997
0.8527 High Similarity NPC211352
0.8504 High Similarity NPC59654
0.8504 High Similarity NPC271832
0.85 High Similarity NPC238075
0.8496 Intermediate Similarity NPC272029
0.848 Intermediate Similarity NPC252962
0.848 Intermediate Similarity NPC320847
0.8468 Intermediate Similarity NPC96940
0.8462 Intermediate Similarity NPC71372
0.8462 Intermediate Similarity NPC275627
0.8438 Intermediate Similarity NPC11089
0.8438 Intermediate Similarity NPC475880
0.8435 Intermediate Similarity NPC233320
0.843 Intermediate Similarity NPC63010
0.8374 Intermediate Similarity NPC473875
0.8374 Intermediate Similarity NPC96423
0.8374 Intermediate Similarity NPC218753
0.8372 Intermediate Similarity NPC474246
0.8372 Intermediate Similarity NPC474143
0.8359 Intermediate Similarity NPC472797
0.8359 Intermediate Similarity NPC222108
0.8359 Intermediate Similarity NPC472796
0.8359 Intermediate Similarity NPC96719
0.8359 Intermediate Similarity NPC206028
0.8359 Intermediate Similarity NPC472795
0.8348 Intermediate Similarity NPC30416
0.8346 Intermediate Similarity NPC142087
0.8346 Intermediate Similarity NPC95034
0.8333 Intermediate Similarity NPC279118
0.8333 Intermediate Similarity NPC293801
0.8333 Intermediate Similarity NPC470726
0.8333 Intermediate Similarity NPC28476
0.8333 Intermediate Similarity NPC474610
0.8333 Intermediate Similarity NPC133407
0.8319 Intermediate Similarity NPC477685
0.8308 Intermediate Similarity NPC85595
0.8308 Intermediate Similarity NPC472798
0.8305 Intermediate Similarity NPC470723
0.8295 Intermediate Similarity NPC196193
0.8293 Intermediate Similarity NPC103916
0.8281 Intermediate Similarity NPC38604
0.8281 Intermediate Similarity NPC211179
0.8268 Intermediate Similarity NPC470724
0.8268 Intermediate Similarity NPC128321
0.8264 Intermediate Similarity NPC154256
0.8264 Intermediate Similarity NPC290470
0.8261 Intermediate Similarity NPC117115
0.8246 Intermediate Similarity NPC108497
0.824 Intermediate Similarity NPC473464
0.824 Intermediate Similarity NPC476332
0.824 Intermediate Similarity NPC74137
0.8235 Intermediate Similarity NPC302371
0.822 Intermediate Similarity NPC132720
0.8217 Intermediate Similarity NPC266868
0.8211 Intermediate Similarity NPC137294
0.8211 Intermediate Similarity NPC85895
0.8203 Intermediate Similarity NPC473134
0.8203 Intermediate Similarity NPC156298
0.8195 Intermediate Similarity NPC472800
0.819 Intermediate Similarity NPC53740
0.819 Intermediate Similarity NPC469913
0.8189 Intermediate Similarity NPC131397
0.8189 Intermediate Similarity NPC105031
0.8189 Intermediate Similarity NPC476254
0.8168 Intermediate Similarity NPC469611
0.8168 Intermediate Similarity NPC118253
0.8167 Intermediate Similarity NPC35344
0.8167 Intermediate Similarity NPC141003
0.8162 Intermediate Similarity NPC186033
0.816 Intermediate Similarity NPC476165
0.8158 Intermediate Similarity NPC80800
0.8154 Intermediate Similarity NPC470727
0.8154 Intermediate Similarity NPC249425
0.8148 Intermediate Similarity NPC79372
0.8148 Intermediate Similarity NPC473049
0.8148 Intermediate Similarity NPC472794
0.8148 Intermediate Similarity NPC76312
0.8145 Intermediate Similarity NPC14177
0.8125 Intermediate Similarity NPC82299
0.812 Intermediate Similarity NPC151477
0.8106 Intermediate Similarity NPC469610
0.8103 Intermediate Similarity NPC47284
0.8102 Intermediate Similarity NPC329493
0.8099 Intermediate Similarity NPC470837
0.8095 Intermediate Similarity NPC57199
0.8095 Intermediate Similarity NPC152946
0.8092 Intermediate Similarity NPC258073
0.8092 Intermediate Similarity NPC469907
0.8092 Intermediate Similarity NPC8899
0.8092 Intermediate Similarity NPC472590
0.8088 Intermediate Similarity NPC472791
0.8088 Intermediate Similarity NPC472792
0.8087 Intermediate Similarity NPC269212
0.8083 Intermediate Similarity NPC62867
0.8083 Intermediate Similarity NPC177962
0.8083 Intermediate Similarity NPC228452
0.808 Intermediate Similarity NPC475529
0.807 Intermediate Similarity NPC48730
0.807 Intermediate Similarity NPC129373
0.807 Intermediate Similarity NPC248396
0.8062 Intermediate Similarity NPC46978
0.8062 Intermediate Similarity NPC469386
0.8062 Intermediate Similarity NPC473221
0.8062 Intermediate Similarity NPC186889
0.806 Intermediate Similarity NPC115861
0.8047 Intermediate Similarity NPC124030
0.8047 Intermediate Similarity NPC76119
0.8047 Intermediate Similarity NPC4286
0.8045 Intermediate Similarity NPC27394
0.8034 Intermediate Similarity NPC21594
0.8034 Intermediate Similarity NPC155072
0.8033 Intermediate Similarity NPC301321
0.8031 Intermediate Similarity NPC248786
0.803 Intermediate Similarity NPC329427
0.803 Intermediate Similarity NPC251549
0.803 Intermediate Similarity NPC51262
0.803 Intermediate Similarity NPC317601
0.8016 Intermediate Similarity NPC212965
0.8015 Intermediate Similarity NPC470725
0.8 Intermediate Similarity NPC266937
0.8 Intermediate Similarity NPC223912
0.8 Intermediate Similarity NPC135467
0.8 Intermediate Similarity NPC77772
0.8 Intermediate Similarity NPC260832
0.8 Intermediate Similarity NPC54373
0.8 Intermediate Similarity NPC201069
0.8 Intermediate Similarity NPC470770
0.7984 Intermediate Similarity NPC190514
0.7984 Intermediate Similarity NPC476006
0.7982 Intermediate Similarity NPC260775
0.7967 Intermediate Similarity NPC141001
0.7967 Intermediate Similarity NPC312105
0.7967 Intermediate Similarity NPC471668
0.7966 Intermediate Similarity NPC320439
0.7956 Intermediate Similarity NPC265075
0.7956 Intermediate Similarity NPC71046
0.7955 Intermediate Similarity NPC82503
0.7955 Intermediate Similarity NPC474200
0.7953 Intermediate Similarity NPC120638
0.7953 Intermediate Similarity NPC49441
0.7953 Intermediate Similarity NPC150026
0.7951 Intermediate Similarity NPC471534
0.7941 Intermediate Similarity NPC265335
0.7939 Intermediate Similarity NPC93962
0.7934 Intermediate Similarity NPC280760
0.7934 Intermediate Similarity NPC46940
0.7931 Intermediate Similarity NPC12870
0.7931 Intermediate Similarity NPC24327
0.7929 Intermediate Similarity NPC471608
0.7926 Intermediate Similarity NPC126101
0.7926 Intermediate Similarity NPC475628
0.7926 Intermediate Similarity NPC327735
0.7926 Intermediate Similarity NPC21797

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC45663 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9386 High Similarity NPD7340 Approved
0.9298 High Similarity NPD6671 Approved
0.9292 High Similarity NPD1398 Phase 1
0.9167 High Similarity NPD6696 Suspended
0.8651 High Similarity NPD4625 Phase 3
0.85 High Similarity NPD7644 Approved
0.8468 Intermediate Similarity NPD4749 Approved
0.839 Intermediate Similarity NPD7635 Approved
0.8306 Intermediate Similarity NPD1611 Approved
0.8295 Intermediate Similarity NPD6410 Clinical (unspecified phase)
0.8145 Intermediate Similarity NPD4626 Approved
0.8062 Intermediate Similarity NPD2861 Phase 2
0.8031 Intermediate Similarity NPD3600 Clinical (unspecified phase)
0.792 Intermediate Similarity NPD5691 Approved
0.7895 Intermediate Similarity NPD4060 Phase 1
0.7881 Intermediate Similarity NPD968 Approved
0.7879 Intermediate Similarity NPD7985 Registered
0.7872 Intermediate Similarity NPD6090 Discontinued
0.7868 Intermediate Similarity NPD6099 Approved
0.7868 Intermediate Similarity NPD6100 Approved
0.7846 Intermediate Similarity NPD6917 Clinical (unspecified phase)
0.7795 Intermediate Similarity NPD3496 Discontinued
0.7759 Intermediate Similarity NPD289 Clinical (unspecified phase)
0.7719 Intermediate Similarity NPD844 Approved
0.7698 Intermediate Similarity NPD5698 Clinical (unspecified phase)
0.7674 Intermediate Similarity NPD2233 Approved
0.7674 Intermediate Similarity NPD2230 Approved
0.7674 Intermediate Similarity NPD2232 Approved
0.7667 Intermediate Similarity NPD2342 Discontinued
0.7652 Intermediate Similarity NPD288 Approved
0.7643 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7619 Intermediate Similarity NPD5929 Approved
0.7615 Intermediate Similarity NPD5327 Phase 3
0.7612 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7554 Intermediate Similarity NPD2346 Discontinued
0.7541 Intermediate Similarity NPD4750 Phase 3
0.7519 Intermediate Similarity NPD2237 Approved
0.7518 Intermediate Similarity NPD4097 Suspended
0.7518 Intermediate Similarity NPD6353 Approved
0.75 Intermediate Similarity NPD1651 Approved
0.7463 Intermediate Similarity NPD4908 Phase 1
0.7462 Intermediate Similarity NPD1610 Phase 2
0.746 Intermediate Similarity NPD7157 Approved
0.746 Intermediate Similarity NPD709 Approved
0.7459 Intermediate Similarity NPD2684 Approved
0.7447 Intermediate Similarity NPD6674 Discontinued
0.7445 Intermediate Similarity NPD5735 Approved
0.7444 Intermediate Similarity NPD4624 Approved
0.7442 Intermediate Similarity NPD1778 Approved
0.7429 Intermediate Similarity NPD5763 Approved
0.7429 Intermediate Similarity NPD5762 Approved
0.7424 Intermediate Similarity NPD1283 Approved
0.7394 Intermediate Similarity NPD7982 Clinical (unspecified phase)
0.7391 Intermediate Similarity NPD845 Approved
0.7391 Intermediate Similarity NPD2157 Approved
0.7388 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7388 Intermediate Similarity NPD1712 Approved
0.7381 Intermediate Similarity NPD497 Approved
0.7377 Intermediate Similarity NPD290 Approved
0.7372 Intermediate Similarity NPD4140 Approved
0.7364 Intermediate Similarity NPD3443 Approved
0.7364 Intermediate Similarity NPD3445 Approved
0.7364 Intermediate Similarity NPD3444 Approved
0.736 Intermediate Similarity NPD7843 Approved
0.7353 Intermediate Similarity NPD1699 Clinical (unspecified phase)
0.7333 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7313 Intermediate Similarity NPD6584 Phase 3
0.7302 Intermediate Similarity NPD495 Approved
0.7302 Intermediate Similarity NPD496 Approved
0.7302 Intermediate Similarity NPD498 Approved
0.7293 Intermediate Similarity NPD8651 Approved
0.728 Intermediate Similarity NPD228 Approved
0.7279 Intermediate Similarity NPD7095 Approved
0.7273 Intermediate Similarity NPD2231 Phase 2
0.7273 Intermediate Similarity NPD2235 Phase 2
0.7265 Intermediate Similarity NPD1809 Phase 2
0.726 Intermediate Similarity NPD2676 Approved
0.726 Intermediate Similarity NPD2675 Approved
0.7246 Intermediate Similarity NPD3620 Phase 2
0.7246 Intermediate Similarity NPD3619 Clinical (unspecified phase)
0.7239 Intermediate Similarity NPD2797 Approved
0.7234 Intermediate Similarity NPD2935 Discontinued
0.7227 Intermediate Similarity NPD3020 Approved
0.7218 Intermediate Similarity NPD1669 Approved
0.7197 Intermediate Similarity NPD1281 Approved
0.7188 Intermediate Similarity NPD6387 Discontinued
0.7185 Intermediate Similarity NPD3691 Phase 2
0.7185 Intermediate Similarity NPD3690 Phase 2
0.7174 Intermediate Similarity NPD8032 Phase 2
0.7165 Intermediate Similarity NPD5283 Phase 1
0.7154 Intermediate Similarity NPD1548 Phase 1
0.7143 Intermediate Similarity NPD1608 Approved
0.7133 Intermediate Similarity NPD7037 Approved
0.7132 Intermediate Similarity NPD7325 Clinical (unspecified phase)
0.7123 Intermediate Similarity NPD7041 Phase 2
0.7123 Intermediate Similarity NPD7040 Clinical (unspecified phase)
0.7122 Intermediate Similarity NPD2979 Phase 3
0.7122 Intermediate Similarity NPD2238 Phase 2
0.7122 Intermediate Similarity NPD1613 Approved
0.7122 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7119 Intermediate Similarity NPD2859 Approved
0.7119 Intermediate Similarity NPD2860 Approved
0.7114 Intermediate Similarity NPD3226 Approved
0.7114 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7113 Intermediate Similarity NPD4477 Approved
0.7113 Intermediate Similarity NPD4476 Approved
0.7103 Intermediate Similarity NPD3692 Discontinued
0.7101 Intermediate Similarity NPD7294 Phase 1
0.7101 Intermediate Similarity NPD6812 Clinical (unspecified phase)
0.7099 Intermediate Similarity NPD5585 Approved
0.709 Intermediate Similarity NPD6582 Phase 2
0.709 Intermediate Similarity NPD6583 Phase 3
0.7087 Intermediate Similarity NPD821 Approved
0.7087 Intermediate Similarity NPD5535 Approved
0.7087 Intermediate Similarity NPD1138 Approved
0.7068 Intermediate Similarity NPD422 Phase 1
0.7068 Intermediate Similarity NPD1535 Discovery
0.7068 Intermediate Similarity NPD1091 Approved
0.7054 Intermediate Similarity NPD2557 Approved
0.7045 Intermediate Similarity NPD2668 Approved
0.7045 Intermediate Similarity NPD4059 Approved
0.7045 Intermediate Similarity NPD2667 Approved
0.7043 Intermediate Similarity NPD9295 Approved
0.7034 Intermediate Similarity NPD2933 Approved
0.7034 Intermediate Similarity NPD2934 Approved
0.7034 Intermediate Similarity NPD1432 Clinical (unspecified phase)
0.7023 Intermediate Similarity NPD3091 Approved
0.7015 Intermediate Similarity NPD1481 Phase 2
0.7015 Intermediate Similarity NPD1840 Phase 2
0.7014 Intermediate Similarity NPD2424 Discontinued
0.7008 Intermediate Similarity NPD1139 Approved
0.7008 Intermediate Similarity NPD1137 Approved
0.6985 Remote Similarity NPD4098 Discontinued
0.6984 Remote Similarity NPD3021 Approved
0.6984 Remote Similarity NPD3022 Approved
0.6978 Remote Similarity NPD3268 Approved
0.6972 Remote Similarity NPD7097 Phase 1
0.697 Remote Similarity NPD6382 Discontinued
0.6959 Remote Similarity NPD7446 Clinical (unspecified phase)
0.6957 Remote Similarity NPD600 Approved
0.6957 Remote Similarity NPD596 Approved
0.695 Remote Similarity NPD6355 Discontinued
0.6944 Remote Similarity NPD7030 Discontinued
0.694 Remote Similarity NPD3705 Approved
0.6935 Remote Similarity NPD9697 Approved
0.6933 Remote Similarity NPD2370 Clinical (unspecified phase)
0.6929 Remote Similarity NPD7477 Discontinued
0.6923 Remote Similarity NPD2156 Approved
0.6923 Remote Similarity NPD2154 Approved
0.6923 Remote Similarity NPD2155 Approved
0.6923 Remote Similarity NPD2799 Discontinued
0.6923 Remote Similarity NPD4308 Phase 3
0.6923 Remote Similarity NPD4108 Discontinued
0.6918 Remote Similarity NPD7003 Approved
0.6918 Remote Similarity NPD7976 Clinical (unspecified phase)
0.6917 Remote Similarity NPD2932 Approved
0.6917 Remote Similarity NPD2286 Discontinued
0.6917 Remote Similarity NPD3019 Approved
0.6917 Remote Similarity NPD17 Approved
0.6913 Remote Similarity NPD5261 Clinical (unspecified phase)
0.6906 Remote Similarity NPD3027 Phase 3
0.6901 Remote Similarity NPD6653 Approved
0.6899 Remote Similarity NPD594 Approved
0.6899 Remote Similarity NPD592 Approved
0.6892 Remote Similarity NPD6087 Phase 1
0.6884 Remote Similarity NPD5736 Approved
0.6879 Remote Similarity NPD6959 Discontinued
0.6875 Remote Similarity NPD6124 Clinical (unspecified phase)
0.6875 Remote Similarity NPD6032 Approved
0.6871 Remote Similarity NPD2677 Approved
0.6859 Remote Similarity NPD5709 Phase 3
0.6857 Remote Similarity NPD2313 Discontinued
0.6857 Remote Similarity NPD1336 Approved
0.6853 Remote Similarity NPD4536 Approved
0.6853 Remote Similarity NPD4538 Approved
0.6853 Remote Similarity NPD4537 Clinical (unspecified phase)
0.685 Remote Similarity NPD5451 Approved
0.685 Remote Similarity NPD1792 Phase 2
0.6846 Remote Similarity NPD2532 Approved
0.6846 Remote Similarity NPD7004 Clinical (unspecified phase)
0.6846 Remote Similarity NPD2534 Approved
0.6846 Remote Similarity NPD2533 Approved
0.6842 Remote Similarity NPD3049 Approved
0.6838 Remote Similarity NPD4359 Approved
0.6832 Remote Similarity NPD5844 Phase 1
0.6831 Remote Similarity NPD5124 Phase 1
0.6831 Remote Similarity NPD5123 Clinical (unspecified phase)
0.6829 Remote Similarity NPD846 Approved
0.6829 Remote Similarity NPD940 Approved
0.6828 Remote Similarity NPD6003 Clinical (unspecified phase)
0.6828 Remote Similarity NPD6005 Phase 3
0.6828 Remote Similarity NPD6006 Clinical (unspecified phase)
0.6828 Remote Similarity NPD6004 Phase 3
0.6828 Remote Similarity NPD6002 Phase 3
0.6824 Remote Similarity NPD6666 Approved
0.6824 Remote Similarity NPD6667 Approved
0.6818 Remote Similarity NPD7819 Suspended
0.6815 Remote Similarity NPD4666 Phase 3
0.6815 Remote Similarity NPD3092 Approved
0.6815 Remote Similarity NPD776 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data