Structure

Physi-Chem Properties

Molecular Weight:  416.37
Volume:  485.402
LogP:  9.347
LogD:  6.556
LogS:  -6.926
# Rotatable Bonds:  12
TPSA:  29.46
# H-Bond Aceptor:  2
# H-Bond Donor:  1
# Rings:  2
# Heavy Atoms:  2

MedChem Properties

QED Drug-Likeness Score:  0.37
Synthetic Accessibility Score:  3.786
Fsp3:  0.786
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Rejected
BMS Rule:  1
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.855
MDCK Permeability:  7.582164016639581e-06
Pgp-inhibitor:  0.05
Pgp-substrate:  0.0
Human Intestinal Absorption (HIA):  0.003
20% Bioavailability (F20%):  0.954
30% Bioavailability (F30%):  0.956

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.838
Plasma Protein Binding (PPB):  100.60321807861328%
Volume Distribution (VD):  5.329
Pgp-substrate:  1.8462365865707397%

ADMET: Metabolism

CYP1A2-inhibitor:  0.1
CYP1A2-substrate:  0.208
CYP2C19-inhibitor:  0.316
CYP2C19-substrate:  0.89
CYP2C9-inhibitor:  0.16
CYP2C9-substrate:  0.948
CYP2D6-inhibitor:  0.219
CYP2D6-substrate:  0.277
CYP3A4-inhibitor:  0.331
CYP3A4-substrate:  0.138

ADMET: Excretion

Clearance (CL):  8.243
Half-life (T1/2):  0.029

ADMET: Toxicity

hERG Blockers:  0.021
Human Hepatotoxicity (H-HT):  0.181
Drug-inuced Liver Injury (DILI):  0.029
AMES Toxicity:  0.04
Rat Oral Acute Toxicity:  0.036
Maximum Recommended Daily Dose:  0.07
Skin Sensitization:  0.954
Carcinogencity:  0.029
Eye Corrosion:  0.01
Eye Irritation:  0.45
Respiratory Toxicity:  0.34

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Similar NPs/Drugs  

  Natural Product: NPC168707

Natural Product ID:  NPC168707
Common Name*:   2,7,8-Trimethyl-2-(4,8,12-Trimethyltridecyl)-3,4-Dihydrochromen-6-Ol
IUPAC Name:   2,7,8-trimethyl-2-(4,8,12-trimethyltridecyl)-3,4-dihydrochromen-6-ol
Synonyms:  
Standard InCHIKey:  QUEDXNHFTDJVIY-UHFFFAOYSA-N
Standard InCHI:  InChI=1S/C28H48O2/c1-20(2)11-8-12-21(3)13-9-14-22(4)15-10-17-28(7)18-16-25-19-26(29)23(5)24(6)27(25)30-28/h19-22,29H,8-18H2,1-7H3
SMILES:  CC(C)CCCC(C)CCCC(C)CCCC1(C)CCc2cc(c(C)c(C)c2O1)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL420898
PubChem CID:   14986
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001534] Quinone and hydroquinone lipids
          • [CHEMONTID:0001546] Vitamin E compounds
            • [CHEMONTID:0000201] Tocopherols

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO21349 Punica granatum Species Lythraceae Eukaryota n.a. fruit n.a. DOI[10.1007/s00217-007-0799-1]
NPO21349 Punica granatum Species Lythraceae Eukaryota n.a. flower n.a. DOI[10.1016/j.foodchem.2011.01.077]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota n.a. kernel n.a. PMID[10670815]
NPO21349 Punica granatum Species Lythraceae Eukaryota n.a. n.a. n.a. PMID[11520216]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. seed n.a. PMID[11540412]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. root n.a. PMID[14727919]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. xylem n.a. PMID[14727919]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. bark n.a. PMID[14727919]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. leaf n.a. PMID[14727919]
NPO21349 Punica granatum Species Lythraceae Eukaryota Seeds n.a. n.a. PMID[15620261]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota Fruits Malatya Fruit Research Institute between the first and third weeks of 2005-Jul. PMID[18038980]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. pericarp n.a. PMID[18496782]
NPO23218 Viscum coloratum Species Viscaceae Eukaryota n.a. aerial part n.a. PMID[2082684]
NPO23218 Viscum coloratum Species Viscaceae Eukaryota n.a. aerial part n.a. PMID[21922656]
NPO7539 Raphanus sativus Species Brassicaceae Eukaryota n.a. n.a. n.a. PMID[24176362]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. n.a. n.a. PMID[25466114]
NPO7539 Raphanus sativus Species Brassicaceae Eukaryota seeds n.a. n.a. PMID[25466198]
NPO18674 Juglans regia Species Juglandaceae Eukaryota Flowers n.a. n.a. PMID[28737396]
NPO26277 Euphorbia hirta Species Euphorbiaceae Eukaryota n.a. n.a. n.a. PMID[32141299]
NPO23218 Viscum coloratum Species Viscaceae Eukaryota n.a. aerial part n.a. PMID[3254039]
NPO23218 Viscum coloratum Species Viscaceae Eukaryota n.a. aerial part n.a. PMID[3256207]
NPO7808 Viscum album Species Viscaceae Eukaryota n.a. twig n.a. PMID[9179367]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. leaf n.a. Database[Article]
NPO21349 Punica granatum Species Lythraceae Eukaryota Twig n.a. n.a. Database[FooDB]
NPO7539 Raphanus sativus Species Brassicaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. n.a. Database[FooDB]
NPO21349 Punica granatum Species Lythraceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO21349 Punica granatum Species Lythraceae Eukaryota n.a. n.a. Database[FooDB]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. Database[FooDB]
NPO18674 Juglans regia Species Juglandaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota Fruits n.a. Database[FooDB]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO7539 Raphanus sativus Species Brassicaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO21349 Punica granatum Species Lythraceae Eukaryota Pericarp n.a. n.a. Database[FooDB]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota n.a. n.a. Database[FooDB]
NPO7539 Raphanus sativus Species Brassicaceae Eukaryota Root n.a. n.a. Database[FooDB]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. Database[FooDB]
NPO21349 Punica granatum Species Lythraceae Eukaryota Root Bark n.a. n.a. Database[FooDB]
NPO21349 Punica granatum Species Lythraceae Eukaryota n.a. n.a. Database[FooDB]
NPO21349 Punica granatum Species Lythraceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO7539 Raphanus sativus Species Brassicaceae Eukaryota n.a. n.a. Database[FooDB]
NPO18674 Juglans regia Species Juglandaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO21349 Punica granatum Species Lythraceae Eukaryota Bark n.a. n.a. Database[FooDB]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO18674 Juglans regia Species Juglandaceae Eukaryota Embryo n.a. n.a. Database[FooDB]
NPO21349 Punica granatum Species Lythraceae Eukaryota Stem Bark n.a. n.a. Database[FooDB]
NPO21349 Punica granatum Species Lythraceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO18674 Juglans regia Species Juglandaceae Eukaryota Stem Bark n.a. n.a. Database[FooDB]
NPO18674 Juglans regia Species Juglandaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO18674 Juglans regia Species Juglandaceae Eukaryota Testa n.a. n.a. Database[FooDB]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21349 Punica granatum Species Lythraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26277 Euphorbia hirta Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4545 Canavalia gladiata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7539 Raphanus sativus Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7808 Viscum album Species Viscaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23218 Viscum coloratum Species Viscaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21349 Punica granatum Species Lythraceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO21349 Punica granatum Species Lythraceae Eukaryota Fruits n.a. Database[Phenol-Explorer]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota Fruits n.a. Database[Phenol-Explorer]
NPO8108.1 Citrullus lanatus subsp. vulgaris Subspecies Cucurbitaceae Eukaryota Fruits n.a. Database[Phenol-Explorer]
NPO4545 Canavalia gladiata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23218 Viscum coloratum Species Viscaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7539 Raphanus sativus Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26277 Euphorbia hirta Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7808 Viscum album Species Viscaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8108.1 Citrullus lanatus subsp. vulgaris Subspecies Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21349 Punica granatum Species Lythraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO4545 Canavalia gladiata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO7539 Raphanus sativus Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO21349 Punica granatum Species Lythraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO26277 Euphorbia hirta Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO25099 Prunus mandshurica Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO23218 Viscum coloratum Species Viscaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO7539 Raphanus sativus Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO21349 Punica granatum Species Lythraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO20032 Prunus sibirica Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO4545 Canavalia gladiata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO7808 Viscum album Species Viscaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO23218 Viscum coloratum Species Viscaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7539 Raphanus sativus Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21349 Punica granatum Species Lythraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26277 Euphorbia hirta Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18674 Juglans regia Species Juglandaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20032 Prunus sibirica Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7808 Viscum album Species Viscaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4545 Canavalia gladiata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT65 Cell Line HepG2 Homo sapiens Inhibition = 3.0 % PMID[448924]
NPT65 Cell Line HepG2 Homo sapiens Inhibition = 0.0 % PMID[448924]
NPT2 Others Unspecified IC50 n.a. 20000.0 nM PMID[448925]
NPT2 Others Unspecified IC50 n.a. 10000.0 nM PMID[448925]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC168707 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC48623
0.9912 High Similarity NPC45663
0.9649 High Similarity NPC139047
0.9561 High Similarity NPC187993
0.9561 High Similarity NPC238176
0.9474 High Similarity NPC69539
0.9474 High Similarity NPC242580
0.9474 High Similarity NPC236070
0.9474 High Similarity NPC126759
0.9412 High Similarity NPC61685
0.9316 High Similarity NPC474131
0.9231 High Similarity NPC32152
0.9231 High Similarity NPC51341
0.9153 High Similarity NPC232295
0.9091 High Similarity NPC248557
0.9068 High Similarity NPC471449
0.9052 High Similarity NPC473718
0.8952 High Similarity NPC47288
0.8934 High Similarity NPC474237
0.8926 High Similarity NPC204535
0.8926 High Similarity NPC46586
0.8917 High Similarity NPC129176
0.8852 High Similarity NPC474130
0.8819 High Similarity NPC27578
0.8819 High Similarity NPC289624
0.88 High Similarity NPC81261
0.8793 High Similarity NPC474920
0.878 High Similarity NPC190086
0.878 High Similarity NPC276962
0.876 High Similarity NPC212559
0.874 High Similarity NPC153019
0.8707 High Similarity NPC469912
0.8699 High Similarity NPC261992
0.8689 High Similarity NPC475839
0.8661 High Similarity NPC196621
0.8651 High Similarity NPC176590
0.8632 High Similarity NPC98372
0.8629 High Similarity NPC147896
0.8618 High Similarity NPC188997
0.8618 High Similarity NPC302211
0.8607 High Similarity NPC100108
0.8607 High Similarity NPC277798
0.8605 High Similarity NPC211352
0.8594 High Similarity NPC160623
0.8583 High Similarity NPC238075
0.8583 High Similarity NPC16577
0.8571 High Similarity NPC283169
0.8548 High Similarity NPC96940
0.8516 High Similarity NPC475880
0.8516 High Similarity NPC325003
0.8512 High Similarity NPC283616
0.8455 Intermediate Similarity NPC96423
0.845 Intermediate Similarity NPC474143
0.845 Intermediate Similarity NPC474246
0.8438 Intermediate Similarity NPC271832
0.8438 Intermediate Similarity NPC206028
0.8438 Intermediate Similarity NPC222108
0.8438 Intermediate Similarity NPC96719
0.8438 Intermediate Similarity NPC59654
0.8438 Intermediate Similarity NPC472795
0.8438 Intermediate Similarity NPC472797
0.8438 Intermediate Similarity NPC472796
0.8435 Intermediate Similarity NPC30416
0.8421 Intermediate Similarity NPC272029
0.8413 Intermediate Similarity NPC470726
0.8413 Intermediate Similarity NPC252962
0.8413 Intermediate Similarity NPC279118
0.8413 Intermediate Similarity NPC320847
0.8409 Intermediate Similarity NPC474610
0.8397 Intermediate Similarity NPC71372
0.839 Intermediate Similarity NPC275627
0.839 Intermediate Similarity NPC470723
0.8385 Intermediate Similarity NPC85595
0.8385 Intermediate Similarity NPC472798
0.8372 Intermediate Similarity NPC11089
0.8372 Intermediate Similarity NPC196193
0.8362 Intermediate Similarity NPC233320
0.8361 Intermediate Similarity NPC63010
0.8359 Intermediate Similarity NPC38604
0.8359 Intermediate Similarity NPC211179
0.8348 Intermediate Similarity NPC117115
0.8346 Intermediate Similarity NPC470724
0.8346 Intermediate Similarity NPC128321
0.832 Intermediate Similarity NPC473464
0.832 Intermediate Similarity NPC476332
0.8306 Intermediate Similarity NPC218753
0.8306 Intermediate Similarity NPC473875
0.8305 Intermediate Similarity NPC132720
0.8295 Intermediate Similarity NPC266868
0.8281 Intermediate Similarity NPC473134
0.8281 Intermediate Similarity NPC95034
0.8281 Intermediate Similarity NPC156298
0.8281 Intermediate Similarity NPC142087
0.8276 Intermediate Similarity NPC469913
0.8271 Intermediate Similarity NPC472800
0.8268 Intermediate Similarity NPC28476
0.8268 Intermediate Similarity NPC293801
0.8268 Intermediate Similarity NPC133407
0.8246 Intermediate Similarity NPC477685
0.8244 Intermediate Similarity NPC469611
0.8235 Intermediate Similarity NPC186033
0.8231 Intermediate Similarity NPC249425
0.8231 Intermediate Similarity NPC470727
0.8226 Intermediate Similarity NPC103916
0.8222 Intermediate Similarity NPC76312
0.8222 Intermediate Similarity NPC473049
0.8222 Intermediate Similarity NPC79372
0.8222 Intermediate Similarity NPC472794
0.8205 Intermediate Similarity NPC151477
0.8197 Intermediate Similarity NPC154256
0.8197 Intermediate Similarity NPC290470
0.8182 Intermediate Similarity NPC469610
0.8175 Intermediate Similarity NPC152946
0.8175 Intermediate Similarity NPC74137
0.8174 Intermediate Similarity NPC108497
0.8168 Intermediate Similarity NPC258073
0.8168 Intermediate Similarity NPC472590
0.8168 Intermediate Similarity NPC8899
0.8167 Intermediate Similarity NPC302371
0.8167 Intermediate Similarity NPC62867
0.8167 Intermediate Similarity NPC177962
0.8167 Intermediate Similarity NPC228452
0.8162 Intermediate Similarity NPC472791
0.8162 Intermediate Similarity NPC472792
0.8145 Intermediate Similarity NPC85895
0.8145 Intermediate Similarity NPC137294
0.814 Intermediate Similarity NPC186889
0.8125 Intermediate Similarity NPC131397
0.8125 Intermediate Similarity NPC4286
0.8125 Intermediate Similarity NPC124030
0.8125 Intermediate Similarity NPC76119
0.8125 Intermediate Similarity NPC105031
0.8125 Intermediate Similarity NPC476254
0.812 Intermediate Similarity NPC27394
0.812 Intermediate Similarity NPC53740
0.812 Intermediate Similarity NPC21594
0.8106 Intermediate Similarity NPC118253
0.8099 Intermediate Similarity NPC141003
0.8099 Intermediate Similarity NPC35344
0.8095 Intermediate Similarity NPC476165
0.8092 Intermediate Similarity NPC470725
0.8087 Intermediate Similarity NPC80800
0.8083 Intermediate Similarity NPC54373
0.8083 Intermediate Similarity NPC470770
0.8083 Intermediate Similarity NPC77772
0.8083 Intermediate Similarity NPC266937
0.808 Intermediate Similarity NPC14177
0.808 Intermediate Similarity NPC135467
0.808 Intermediate Similarity NPC260832
0.8077 Intermediate Similarity NPC223912
0.8077 Intermediate Similarity NPC201069
0.8062 Intermediate Similarity NPC82299
0.8051 Intermediate Similarity NPC320439
0.8049 Intermediate Similarity NPC471668
0.8049 Intermediate Similarity NPC312105
0.8049 Intermediate Similarity NPC141001
0.8043 Intermediate Similarity NPC329493
0.8034 Intermediate Similarity NPC47284
0.8033 Intermediate Similarity NPC471534
0.8033 Intermediate Similarity NPC470837
0.8031 Intermediate Similarity NPC57199
0.8031 Intermediate Similarity NPC150026
0.803 Intermediate Similarity NPC469907
0.803 Intermediate Similarity NPC474200
0.8029 Intermediate Similarity NPC71046
0.8017 Intermediate Similarity NPC280760
0.8017 Intermediate Similarity NPC12870
0.8017 Intermediate Similarity NPC24327
0.8017 Intermediate Similarity NPC269212
0.8016 Intermediate Similarity NPC475529
0.8015 Intermediate Similarity NPC265335
0.8015 Intermediate Similarity NPC93962
0.8 Intermediate Similarity NPC473221
0.8 Intermediate Similarity NPC126101
0.8 Intermediate Similarity NPC327735
0.8 Intermediate Similarity NPC46978
0.8 Intermediate Similarity NPC248396
0.8 Intermediate Similarity NPC471608
0.8 Intermediate Similarity NPC72729
0.8 Intermediate Similarity NPC48730
0.8 Intermediate Similarity NPC151197
0.8 Intermediate Similarity NPC129373
0.8 Intermediate Similarity NPC115861
0.8 Intermediate Similarity NPC475628
0.8 Intermediate Similarity NPC469386
0.7986 Intermediate Similarity NPC474599
0.7985 Intermediate Similarity NPC473107
0.7984 Intermediate Similarity NPC81641
0.7984 Intermediate Similarity NPC25648
0.7984 Intermediate Similarity NPC477213
0.7971 Intermediate Similarity NPC323126
0.797 Intermediate Similarity NPC329427
0.797 Intermediate Similarity NPC51262
0.797 Intermediate Similarity NPC251549
0.797 Intermediate Similarity NPC312560
0.797 Intermediate Similarity NPC317601
0.7969 Intermediate Similarity NPC248786
0.7967 Intermediate Similarity NPC301321
0.7966 Intermediate Similarity NPC155072
0.7956 Intermediate Similarity NPC252901

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC168707 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9474 High Similarity NPD7340 Approved
0.9217 High Similarity NPD6671 Approved
0.9211 High Similarity NPD1398 Phase 1
0.9091 High Similarity NPD6696 Suspended
0.8583 High Similarity NPD7644 Approved
0.8583 High Similarity NPD4625 Phase 3
0.8548 High Similarity NPD4749 Approved
0.8475 Intermediate Similarity NPD7635 Approved
0.8372 Intermediate Similarity NPD6410 Clinical (unspecified phase)
0.824 Intermediate Similarity NPD1611 Approved
0.814 Intermediate Similarity NPD2861 Phase 2
0.811 Intermediate Similarity NPD3600 Clinical (unspecified phase)
0.808 Intermediate Similarity NPD4626 Approved
0.797 Intermediate Similarity NPD4060 Phase 1
0.7955 Intermediate Similarity NPD7985 Registered
0.7943 Intermediate Similarity NPD6090 Discontinued
0.7941 Intermediate Similarity NPD6099 Approved
0.7941 Intermediate Similarity NPD6100 Approved
0.7923 Intermediate Similarity NPD6917 Clinical (unspecified phase)
0.7857 Intermediate Similarity NPD5691 Approved
0.7815 Intermediate Similarity NPD968 Approved
0.7752 Intermediate Similarity NPD2232 Approved
0.7752 Intermediate Similarity NPD2230 Approved
0.7752 Intermediate Similarity NPD2233 Approved
0.7739 Intermediate Similarity NPD288 Approved
0.7734 Intermediate Similarity NPD3496 Discontinued
0.7714 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7692 Intermediate Similarity NPD289 Clinical (unspecified phase)
0.7692 Intermediate Similarity NPD5327 Phase 3
0.7687 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7652 Intermediate Similarity NPD844 Approved
0.7643 Intermediate Similarity NPD5698 Clinical (unspecified phase)
0.7623 Intermediate Similarity NPD4750 Phase 3
0.7603 Intermediate Similarity NPD2342 Discontinued
0.7594 Intermediate Similarity NPD2237 Approved
0.7591 Intermediate Similarity NPD4097 Suspended
0.7591 Intermediate Similarity NPD6353 Approved
0.7568 Intermediate Similarity NPD5929 Approved
0.7538 Intermediate Similarity NPD1610 Phase 2
0.7537 Intermediate Similarity NPD4908 Phase 1
0.7519 Intermediate Similarity NPD4624 Approved
0.7518 Intermediate Similarity NPD5735 Approved
0.7518 Intermediate Similarity NPD6674 Discontinued
0.75 Intermediate Similarity NPD5762 Approved
0.75 Intermediate Similarity NPD5763 Approved
0.75 Intermediate Similarity NPD2346 Discontinued
0.75 Intermediate Similarity NPD1283 Approved
0.7478 Intermediate Similarity NPD845 Approved
0.7465 Intermediate Similarity NPD7982 Clinical (unspecified phase)
0.7464 Intermediate Similarity NPD2157 Approved
0.7463 Intermediate Similarity NPD1712 Approved
0.7445 Intermediate Similarity NPD4140 Approved
0.7442 Intermediate Similarity NPD1651 Approved
0.7402 Intermediate Similarity NPD7157 Approved
0.7402 Intermediate Similarity NPD709 Approved
0.7398 Intermediate Similarity NPD2684 Approved
0.7385 Intermediate Similarity NPD1778 Approved
0.7348 Intermediate Similarity NPD2231 Phase 2
0.7348 Intermediate Similarity NPD2235 Phase 2
0.7333 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7323 Intermediate Similarity NPD497 Approved
0.7319 Intermediate Similarity NPD3620 Phase 2
0.7319 Intermediate Similarity NPD3619 Clinical (unspecified phase)
0.7317 Intermediate Similarity NPD290 Approved
0.7313 Intermediate Similarity NPD2797 Approved
0.7311 Intermediate Similarity NPD3020 Approved
0.7308 Intermediate Similarity NPD3444 Approved
0.7308 Intermediate Similarity NPD3445 Approved
0.7308 Intermediate Similarity NPD3443 Approved
0.7302 Intermediate Similarity NPD7843 Approved
0.7299 Intermediate Similarity NPD1699 Clinical (unspecified phase)
0.7279 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD1281 Approved
0.7266 Intermediate Similarity NPD6387 Discontinued
0.7259 Intermediate Similarity NPD6584 Phase 3
0.7246 Intermediate Similarity NPD8032 Phase 2
0.7244 Intermediate Similarity NPD495 Approved
0.7244 Intermediate Similarity NPD496 Approved
0.7244 Intermediate Similarity NPD498 Approved
0.7244 Intermediate Similarity NPD5283 Phase 1
0.7239 Intermediate Similarity NPD8651 Approved
0.7226 Intermediate Similarity NPD7095 Approved
0.7222 Intermediate Similarity NPD228 Approved
0.7218 Intermediate Similarity NPD1608 Approved
0.7211 Intermediate Similarity NPD2676 Approved
0.7211 Intermediate Similarity NPD2675 Approved
0.7209 Intermediate Similarity NPD7325 Clinical (unspecified phase)
0.7203 Intermediate Similarity NPD7037 Approved
0.7203 Intermediate Similarity NPD1809 Phase 2
0.7194 Intermediate Similarity NPD2979 Phase 3
0.7194 Intermediate Similarity NPD2238 Phase 2
0.7192 Intermediate Similarity NPD7040 Clinical (unspecified phase)
0.7192 Intermediate Similarity NPD7041 Phase 2
0.7183 Intermediate Similarity NPD2935 Discontinued
0.7181 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7176 Intermediate Similarity NPD5585 Approved
0.7174 Intermediate Similarity NPD6812 Clinical (unspecified phase)
0.7165 Intermediate Similarity NPD1138 Approved
0.7164 Intermediate Similarity NPD1669 Approved
0.7132 Intermediate Similarity NPD3691 Phase 2
0.7132 Intermediate Similarity NPD3690 Phase 2
0.7121 Intermediate Similarity NPD2668 Approved
0.7121 Intermediate Similarity NPD4059 Approved
0.7121 Intermediate Similarity NPD2667 Approved
0.7099 Intermediate Similarity NPD1548 Phase 1
0.7099 Intermediate Similarity NPD3091 Approved
0.7087 Intermediate Similarity NPD1137 Approved
0.7087 Intermediate Similarity NPD1139 Approved
0.7071 Intermediate Similarity NPD1613 Approved
0.7071 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7067 Intermediate Similarity NPD3226 Approved
0.7063 Intermediate Similarity NPD4476 Approved
0.7063 Intermediate Similarity NPD3022 Approved
0.7063 Intermediate Similarity NPD4477 Approved
0.7063 Intermediate Similarity NPD3021 Approved
0.7059 Intermediate Similarity NPD2859 Approved
0.7059 Intermediate Similarity NPD4098 Discontinued
0.7059 Intermediate Similarity NPD2860 Approved
0.7055 Intermediate Similarity NPD3692 Discontinued
0.705 Intermediate Similarity NPD3268 Approved
0.705 Intermediate Similarity NPD7294 Phase 1
0.7042 Intermediate Similarity NPD7097 Phase 1
0.7037 Intermediate Similarity NPD6583 Phase 3
0.7037 Intermediate Similarity NPD6582 Phase 2
0.7031 Intermediate Similarity NPD5535 Approved
0.7031 Intermediate Similarity NPD821 Approved
0.7027 Intermediate Similarity NPD7446 Clinical (unspecified phase)
0.7021 Intermediate Similarity NPD6355 Discontinued
0.7015 Intermediate Similarity NPD1535 Discovery
0.7015 Intermediate Similarity NPD1091 Approved
0.7015 Intermediate Similarity NPD422 Phase 1
0.7014 Intermediate Similarity NPD7030 Discontinued
0.7 Intermediate Similarity NPD2370 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD2557 Approved
0.6993 Remote Similarity NPD4108 Discontinued
0.6993 Remote Similarity NPD2799 Discontinued
0.6992 Remote Similarity NPD17 Approved
0.6992 Remote Similarity NPD2932 Approved
0.6992 Remote Similarity NPD3019 Approved
0.6986 Remote Similarity NPD7003 Approved
0.6983 Remote Similarity NPD9295 Approved
0.6975 Remote Similarity NPD1432 Clinical (unspecified phase)
0.6975 Remote Similarity NPD2934 Approved
0.6975 Remote Similarity NPD2933 Approved
0.6972 Remote Similarity NPD6653 Approved
0.6966 Remote Similarity NPD2424 Discontinued
0.6963 Remote Similarity NPD1840 Phase 2
0.6963 Remote Similarity NPD1481 Phase 2
0.6957 Remote Similarity NPD5736 Approved
0.6929 Remote Similarity NPD1792 Phase 2
0.6917 Remote Similarity NPD6382 Discontinued
0.6913 Remote Similarity NPD7004 Clinical (unspecified phase)
0.6912 Remote Similarity NPD4359 Approved
0.6906 Remote Similarity NPD596 Approved
0.6906 Remote Similarity NPD600 Approved
0.6901 Remote Similarity NPD5124 Phase 1
0.6901 Remote Similarity NPD5123 Clinical (unspecified phase)
0.6897 Remote Similarity NPD6004 Phase 3
0.6897 Remote Similarity NPD6006 Clinical (unspecified phase)
0.6897 Remote Similarity NPD6002 Phase 3
0.6897 Remote Similarity NPD6003 Clinical (unspecified phase)
0.6897 Remote Similarity NPD6005 Phase 3
0.6892 Remote Similarity NPD6667 Approved
0.6892 Remote Similarity NPD6666 Approved
0.6889 Remote Similarity NPD3705 Approved
0.6889 Remote Similarity NPD3092 Approved
0.688 Remote Similarity NPD9697 Approved
0.6879 Remote Similarity NPD7477 Discontinued
0.6875 Remote Similarity NPD2154 Approved
0.6875 Remote Similarity NPD2155 Approved
0.6875 Remote Similarity NPD4308 Phase 3
0.6875 Remote Similarity NPD2156 Approved
0.6871 Remote Similarity NPD3892 Phase 2
0.6871 Remote Similarity NPD7976 Clinical (unspecified phase)
0.6867 Remote Similarity NPD5261 Clinical (unspecified phase)
0.6866 Remote Similarity NPD2286 Discontinued
0.6859 Remote Similarity NPD3453 Discontinued
0.6857 Remote Similarity NPD3027 Phase 3
0.6853 Remote Similarity NPD4579 Clinical (unspecified phase)
0.6846 Remote Similarity NPD594 Approved
0.6846 Remote Similarity NPD6087 Phase 1
0.6846 Remote Similarity NPD592 Approved
0.6835 Remote Similarity NPD6959 Discontinued
0.6828 Remote Similarity NPD2531 Phase 2
0.6828 Remote Similarity NPD6032 Approved
0.6828 Remote Similarity NPD2438 Suspended
0.6825 Remote Similarity NPD1444 Approved
0.6825 Remote Similarity NPD1445 Approved
0.6824 Remote Similarity NPD2677 Approved
0.6822 Remote Similarity NPD6124 Clinical (unspecified phase)
0.6815 Remote Similarity NPD5709 Phase 3
0.6812 Remote Similarity NPD3094 Phase 2
0.6812 Remote Similarity NPD987 Approved
0.6809 Remote Similarity NPD2313 Discontinued
0.6809 Remote Similarity NPD1336 Approved
0.6806 Remote Similarity NPD4536 Approved
0.6806 Remote Similarity NPD4538 Approved
0.6806 Remote Similarity NPD4537 Clinical (unspecified phase)
0.68 Remote Similarity NPD2532 Approved
0.68 Remote Similarity NPD2534 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data