Natural Product: NPC43300

Natural Product IDNPC43300
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
Lupenone
IUPAC Name (1R,3aR,5aR,5bR,7aR,11aR,11bR,13aR,13bR)-3a,5a,5b,8,8,11a-hexamethyl-1-prop-1-en-2-yl-2,3,4,5,6,7,7a,10,11,11b,12,13,13a,13b-tetradecahydro-1H-cyclopenta[a]chrysen-9-one
Synonyms Lupenone; Lupeone
Synthetic Gene Cluster n.a.
ChEMBL Identifier CHEMBL486393
PubChem CID 92158
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001553] Triterpenoids

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey GRBHNQFQFHLCHO-BHMAJAPKSA-N
Standard InCHI InChI=1S/C30H48O/c1-19(2)20-11-14-27(5)17-18-29(7)21(25(20)27)9-10-23-28(6)15-13-24(31)26(3,4)22(28)12-16-30(23,29)8/h20-23,25H,1,9-18H2,2-8H3/t20-,21+,22-,23+,25+,27+,28-,29+,30+/m0/s1
SMILES CC(=C)[C@@H]1CC[C@]2([C@H]1[C@H]1CC[C@H]3[C@@]([C@]1(C)CC2)(C)CC[C@@H]1[C@]3(C)CCC(=O)C1(C)C)C

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   424.37 Volume:   488.171
?
Van der Waals volume.
Dense:   0.869 LogP:   6.475
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   4.911
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -7.808
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   1.0 Rigid Bonds:   27.0
TPSA:   17.07
?
Topological Polar Surface Area.
H-Bond Acceptor:   1.0
H-Bond Donor:   0.0 Rings:   5.0
Heavy Atoms:   1.0

MedChem Properties

QED Drug-Likeness Score:   0.387 GASA:   1.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   4.643 Fsp3:   0.9
MCE-18:   99.965
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Rejected
Pfizer Rule:   Accepted GSK Rule:   Accepted
Golden Triangle Rule:   Rejected BMS Rule:   0
Chelating Alert:   0 PAINS Alert:   0
Colloidal aggregators:   0.983 Fluc inhibitor:   0.001
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.001
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.0
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.795 Promiscuous compounds:   0.318

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -5.0 MDCK Permeability:   -4.846
Pgp-inhibitor:   0.781 Pgp-substrate:   0.0
PAMPA:   0.025
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.0
20% Bioavailability (F20%):   0.008 30% Bioavailability (F30%):   0.062
50% Bioavailability (F50%):   0.84

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.723 MRP1:   0.932
Plasma Protein Binding (PPB):   97.655% Volume Distribution (VD):   0.48
Fu: 3.086%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   1.0
OATP1B3 inhibitor:   0.999 BCRP inhibitor:   0.723
BSEP inhibitor:   0.998

ADMET: Metabolism

CYP1A2-inhibitor:   1.0 CYP1A2-substrate:   0.0
CYP2C19-inhibitor:   1.0 CYP2C19-substrate:   0.004
CYP2C9-inhibitor:   0.042 CYP2C9-substrate:   0.001
CYP2D6-inhibitor:   0.0 CYP2D6-substrate:   0.005
CYP3A4-inhibitor:   1.0 CYP3A4-substrate:   0.994
CYP2B6-substrate:   0.021 CYP2C8-inhibitor:   0.192
HLM stability:   0.476
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  10.351 Half-life (T1/2):  0.155

ADMET: Toxicity

hERG Blockers:  0.109 hERG Blockers (10um):  0.327
Human Hepatotoxicity (H-HT):  0.656 Drug-induced Liver Injury (DILI):  0.528
AMES Toxicity:  0.26 Rat Oral Acute Toxicity:  0.382
Maximum Recommended Daily Dose:  0.621 Skin Sensitization:  0.872
Carcinogencity:  0.919 Eye Corrosion:  0.543
Eye Irritation:  0.871 Respiratory Toxicity:  0.849
Drug-induced Neurotoxicity:  0.298 Ototoxicity:  0.361
Hematotoxicity:  0.735 Drug-induced Nephrotoxicity:  0.726
Genotoxicity:  0.698 RPMI-8226 Immunitoxicity:  0.048
A549 Cytotoxicity:  0.217 Hek293 Cytotoxicity:  0.475
BCF:   2.715
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   4.64
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   5.208
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   5.279
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO809 Leitneria floridana Species Simaroubaceae Eukaryota n.a. aerial part n.a. PMID[11141127]
NPO1333 Maytenus chiapensis Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[12713421]
NPO7294 Cunninghamella echinulata Species Cunninghamellaceae Eukaryota n.a. n.a. n.a. PMID[12740180]
NPO30165 Pongamia pinnata Species Fabaceae Eukaryota stem bark Indonesia 1999-SEP PMID[14510596]
NPO30165 Pongamia pinnata Species Fabaceae Eukaryota n.a. stem n.a. PMID[14510596]
NPO24476.1 Phellodendron amurense var. wilsonii Varieties Rutaceae Eukaryota Leaves n.a. n.a. PMID[14510598]
NPO1333 Maytenus chiapensis Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[14738378]
NPO1333 Maytenus chiapensis Species Celastraceae Eukaryota n.a. leaf n.a. PMID[14738378]
NPO27517 Crinum latifolium Species Amaryllidaceae Eukaryota n.a. leaf n.a. PMID[15595606]
NPO17857 Leptogorgia alba Species Gorgoniidae Eukaryota n.a. n.a. n.a. PMID[15844963]
NPO22471 Maytenus cuzcoina Species Celastraceae Eukaryota root bark;leaves Huayllabamba-Urquillos, Province of Urabamba, Cusco (Peru); Parque Nacional El Imposible, El Salvador n.a. PMID[16038541]
NPO1333 Maytenus chiapensis Species Celastraceae Eukaryota root bark;leaves Huayllabamba-Urquillos, Province of Urabamba, Cusco (Peru); Parque Nacional El Imposible, El Salvador n.a. PMID[16038541]
NPO12068 Firmiana simplex Species Malvaceae Eukaryota n.a. n.a. n.a. PMID[16124753]
NPO5635 Bauhinia purpurea Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[16562827]
NPO24639 Streptomyces filamentosus Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17284073]
NPO5635 Bauhinia purpurea Species Fabaceae Eukaryota n.a. root n.a. PMID[17480099]
NPO5635 Bauhinia purpurea Species Fabaceae Eukaryota roots Phitsanulok Province, Thailand 2004-MAY PMID[17480099]
NPO8584 Schisandra arisanensis Species Schisandraceae Eukaryota fruits n.a. n.a. PMID[19673515]
NPO10946 Pseudallescheria boydii Species Microascaceae Eukaryota n.a. n.a. n.a. PMID[20509707]
NPO8584 Schisandra arisanensis Species Schisandraceae Eukaryota fruits n.a. n.a. PMID[20536188]
NPO19556 Clathrina clathrus Species Clathrinidae Eukaryota n.a. n.a. n.a. PMID[20590100]
NPO8087 Aglaia foveolata Species Meliaceae Eukaryota n.a. n.a. n.a. PMID[20939540]
NPO8087 Aglaia foveolata Species Meliaceae Eukaryota n.a. stem n.a. PMID[20939540]
NPO8087 Aglaia foveolata Species Meliaceae Eukaryota n.a. twig n.a. PMID[20939540]
NPO8087 Aglaia foveolata Species Meliaceae Eukaryota n.a. fruit n.a. PMID[20939540]
NPO8087 Aglaia foveolata Species Meliaceae Eukaryota n.a. leaf n.a. PMID[20939540]
NPO4756 Mesua elegans Species Calophyllaceae Eukaryota n.a. n.a. n.a. PMID[20943395]
NPO31410 Cupania cinerea Species Sapindaceae Eukaryota n.a. bark n.a. PMID[21438586]
NPO10224 Operculina turpethum Species Convolvulaceae Eukaryota n.a. aerial part n.a. PMID[21866900]
NPO10449 Arctium lappa Species Asteraceae Eukaryota n.a. fruit n.a. PMID[22396124]
NPO8087 Aglaia foveolata Species Meliaceae Eukaryota n.a. n.a. n.a. PMID[22817615]
NPO8584 Schisandra arisanensis Species Schisandraceae Eukaryota fruits n.a. n.a. PMID[23265871]
NPO10449 Arctium lappa Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[23501116]
NPO546 Candida albicans Species Debaryomycetaceae Eukaryota n.a. n.a. n.a. PMID[23902158]
NPO10946 Pseudallescheria boydii Species Microascaceae Eukaryota n.a. n.a. n.a. PMID[23964677]
NPO15315 Boswellia carterii Species Burseraceae Eukaryota n.a. n.a. n.a. PMID[24195447]
NPO30165 Pongamia pinnata Species Fabaceae Eukaryota dry stem n.a. n.a. PMID[25466192]
NPO22471 Maytenus cuzcoina Species Celastraceae Eukaryota root bark Urubamba, Cusco, Peru n.a. PMID[25927586]
NPO15315 Boswellia carterii Species Burseraceae Eukaryota Gum resin n.a. n.a. PMID[26457560]
NPO8402 Thevetia peruviana Species Apocynaceae Eukaryota n.a. n.a. n.a. PMID[26714048]
NPO40286 Phoradendron vernicosum Species Viscaceae Eukaryota Aerial Parts n.a. n.a. PMID[29120172]
NPO30165 Pongamia pinnata Species Fabaceae Eukaryota Roots n.a. n.a. PMID[29482940]
NPO5710 Michelia rajaniana Species Magnoliaceae Eukaryota n.a. n.a. n.a. PMID[3236012]
NPO46434 Cymbopogon jwarancusa Species Poaceae Eukaryota n.a. n.a. n.a. PMID[37714225]
NPO50863 Atraphaxis pyrifolia Species Polygonaceae Eukaryota n.a. n.a. n.a. PMID[38398586]
NPO7127 Artemisia alba Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[38538562]
NPO8402 Thevetia peruviana Species Apocynaceae Eukaryota n.a. n.a. n.a. PMID[39027575]
NPO20288 Polytolypa hystricis Species Onygenaceae Eukaryota n.a. n.a. n.a. PMID[8691217]
NPO22812 Acacia cambagei Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10449 Arctium lappa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO21530 Arnica viscosa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22871 Aster alpinus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22711 Athanasia dregeana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16711 Baccharis solieri Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO21822 Berberis crataegina Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22529 Calceolaria thyrsiflora Species Calceolariaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO18684 Calophyllum thwaitesii Species Calophyllaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28627.1 Coptis trifolia subsp. groenlandica Subspecies Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22599 Crataegus pontica Species Rosaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20015 Echinocystis lobata Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO21101 Felicia amelloides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11064 Haemanthus toxicarius Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22650 Helenium quadridentatum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO21582 Manihot esculenta Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28078 Melaleuca decora Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO21951 Paramignya griffithii Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO23952 Phlomoides medicinalis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8198 Podocarpus montanus Species Podocarpaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20288 Polytolypa hystricis Species Onygenaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22294 Pteris inaequalis Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20592 Rhodoglossum japonicum Species Gigartinaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO23025 Roccellaria mollis Species Roccellaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8584 Schisandra arisanensis Species Schisandraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO19139 Senecio polyodon Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15478 Senna sophera Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20846 Sophora japonica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO21368 Tricholoma batschii Species Tricholomataceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22927 Xanthoparmelia pokornyi Species Parmeliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO23353 [polyangium] brachysporum Species n.a. Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO17857 Leptogorgia alba Species Gorgoniidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO40286 Phoradendron vernicosum Species Viscaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4061 Trollius europaeus Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8087 Aglaia foveolata Species Meliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO3651 Ajania achilleoides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO26652 Soroseris hookeriana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO81 Erythrina orientalis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4442 Artemisia austriaca Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11244 Chrysolaena propinqua Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25530 Daphne blagayana Species Thymelaeaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9469 Digitalis obscura Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8378 Fagara heitzii n.a. n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO6557 Lotus villosus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4756 Mesua elegans Species Calophyllaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5710 Michelia rajaniana Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5060 Onychopetalum amazonicum Species Annonaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO3215 Phora atra Species Phoridae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO924 Russula subnigricans Species Russulaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO29440 Sarcomyxa serotina Species Tricholomataceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9318 Stevia serrata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12990 Umbelopsis vinacea Species Umbelopsidaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28383 Vernonia tufnellae Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO30165 Pongamia pinnata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4757 Pinus montezumae Species Pinaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO27517 Crinum latifolium Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15315 Boswellia carterii Species Burseraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12068 Firmiana simplex Species Malvaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO23989 Cyclamen neapolitanum Species Primulaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8707.1 Pueraria montana var. lobata Varieties Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11697 Cirsium setosum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO3357 Alnus cordata Species Betulaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4628 Aloe deltoideodonta Species Asphodelaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5635 Bauhinia purpurea Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4382 Elmerrillia papuana n.a. n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO1490 Goldfussia yunnanensis n.a. n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO8807 Laurentia longiflora n.a. n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO809 Leitneria floridana Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9608 Lepraria citrina Species Stereocaulaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8977 Notholaena aschenborniana Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9881 Petrosia hebes Species Petrosiidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6828 Purpura aperta Species Muricidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25475 Syphonota geographica Species Aplysiidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO2455 Thermopsis mollis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22647 Araucaria araucana Species Araucariaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO19694 Senecio scandens Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8402 Thevetia peruviana Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12152 Nicotiana raimondii Species Solanaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO1333 Maytenus chiapensis Species Celastraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22471 Maytenus cuzcoina Species Celastraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO546 Candida albicans Species Debaryomycetaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO17674 Bishopanthus soliceps n.a. n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO50863 Atraphaxis pyrifolia Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO24476.1 Phellodendron amurense var. wilsonii Varieties Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15736 Liatris spicata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO819 Heliotropium olgae Species Heliotropiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO1296 Tichocarpus crinitus Species Tichocarpaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7856 Streptomyces halstedii Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO13459 Nitraria tangutorum Species Nitrariaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO878 Hannoa undulata Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO2480 Amoora rohituka n.a. n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO10946 Pseudallescheria boydii Species Microascaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO19556 Clathrina clathrus Species Clathrinidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10224 Operculina turpethum Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO21582 Manihot esculenta Species Euphorbiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO10449 Arctium lappa Species Asteraceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO10449 Arctium lappa Species Asteraceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO21582 Manihot esculenta Species Euphorbiaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO10449 Arctium lappa Species Asteraceae Eukaryota Root n.a. n.a. Database[FooDB]
NPO21582 Manihot esculenta Species Euphorbiaceae Eukaryota Root n.a. n.a. Database[FooDB]
NPO10449 Arctium lappa Species Asteraceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO10449 Arctium lappa Species Asteraceae Eukaryota n.a. n.a. Database[FooDB]
NPO21582 Manihot esculenta Species Euphorbiaceae Eukaryota Tubers n.a. Database[FooDB]
NPO20846 Sophora japonica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15315 Boswellia carterii Species Burseraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO10449 Arctium lappa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO27517 Crinum latifolium Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO24476.1 Phellodendron amurense var. wilsonii Varieties Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO819 Heliotropium olgae Species Heliotropiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO30165 Pongamia pinnata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12068 Firmiana simplex Species Malvaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21582 Manihot esculenta Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO20453 Cayratia japonica Species Vitaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19694 Senecio scandens Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13459 Nitraria tangutorum Species Nitrariaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11697 Cirsium setosum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8584 Schisandra arisanensis Species Schisandraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22978 Morus tinctoria Species Sulidae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19139 Senecio polyodon Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8198 Podocarpus montanus Species Podocarpaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO10449 Arctium lappa Species Asteraceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO19694 Senecio scandens Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1792 Terminalia calamansanay Species Combretaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO27517 Crinum latifolium Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12068 Firmiana simplex Species Malvaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8707.1 Pueraria montana var. lobata Varieties Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO10449 Arctium lappa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24476.1 Phellodendron amurense var. wilsonii Varieties Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20846 Sophora japonica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20453 Cayratia japonica Species Vitaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11697 Cirsium setosum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15315 Boswellia carterii Species Burseraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22978 Morus tinctoria Species Sulidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21582 Manihot esculenta Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15736 Liatris spicata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22294 Pteris inaequalis Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8584 Schisandra arisanensis Species Schisandraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19139 Senecio polyodon Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15478 Senna sophera Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO819 Heliotropium olgae Species Heliotropiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13459 Nitraria tangutorum Species Nitrariaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO878 Hannoa undulata Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8198 Podocarpus montanus Species Podocarpaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12068 Firmiana simplex Species Malvaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO20846 Sophora japonica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO10449 Arctium lappa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO15315 Boswellia carterii Species Burseraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO8198 Podocarpus montanus Species Podocarpaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO15736 Liatris spicata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO8707.1 Pueraria montana var. lobata Varieties Fabaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO19694 Senecio scandens Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO20846 Sophora japonica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO10449 Arctium lappa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO15315 Boswellia carterii Species Burseraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO23706 Breea segeta n.a. n.a. n.a. n.a. n.a. n.a. Database[TM-MC]
NPO11697 Cirsium setosum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28078 Melaleuca decora Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16711 Baccharis solieri Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12571 Monanthotaxis congoensis Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11127 Inulanthera calva Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22871 Aster alpinus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1490 Goldfussia yunnanensis n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO9881 Petrosia hebes Species Petrosiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20592 Rhodoglossum japonicum Species Gigartinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4756 Mesua elegans Species Calophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22647 Araucaria araucana Species Araucariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10946 Pseudallescheria boydii Species Microascaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4628 Aloe deltoideodonta Species Asphodelaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21582 Manihot esculenta Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4668 Sideritis flavovirens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20288 Polytolypa hystricis Species Onygenaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8977 Notholaena aschenborniana Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15478 Senna sophera Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22711 Athanasia dregeana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3357 Alnus cordata Species Betulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21530 Arnica viscosa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28627.1 Coptis trifolia subsp. groenlandica Subspecies Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22766 Lophanthus chinensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4372 Halimium halimifolium Species Cistaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24639 Streptomyces filamentosus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO2455 Thermopsis mollis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6828 Purpura aperta Species Muricidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9608 Lepraria citrina Species Stereocaulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23025 Roccellaria mollis Species Roccellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4757 Pinus montezumae Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO809 Leitneria floridana Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28383 Vernonia tufnellae Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22927 Xanthoparmelia pokornyi Species Parmeliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8807 Laurentia longiflora n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO22471 Maytenus cuzcoina Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4382 Elmerrillia papuana n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO11697 Cirsium setosum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22812 Acacia cambagei Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10661 Senecio fulgens Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15875 Scolopia chinensis Species Salicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11244 Chrysolaena propinqua Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19139 Senecio polyodon Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22599 Crataegus pontica Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23952 Phlomoides medicinalis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25475 Syphonota geographica Species Aplysiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8584 Schisandra arisanensis Species Schisandraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26652 Soroseris hookeriana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7674 Tragopogon orientalis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22090 Aframomum alboviolaceum Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21368 Tricholoma batschii Species Tricholomataceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7856 Streptomyces halstedii Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO5515 Cephalocroton cordofanus Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2480 Amoora rohituka n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO12990 Umbelopsis vinacea Species Umbelopsidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19694 Senecio scandens Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3651 Ajania achilleoides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8378 Fagara heitzii n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO23353 [polyangium] brachysporum Species n.a. Bacteria n.a. n.a. n.a. Database[UNPD]
NPO22529 Calceolaria thyrsiflora Species Calceolariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20846 Sophora japonica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7294 Cunninghamella echinulata Species Cunninghamellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1792 Terminalia calamansanay Species Combretaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20015 Echinocystis lobata Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12068 Firmiana simplex Species Malvaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22294 Pteris inaequalis Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6557 Lotus villosus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10224 Operculina turpethum Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5635 Bauhinia purpurea Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22650 Helenium quadridentatum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1296 Tichocarpus crinitus Species Tichocarpaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5060 Onychopetalum amazonicum Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13374 Primula grandiflora Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20801 Antrodia sinuosa Species Fomitopsidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17857 Leptogorgia alba Species Gorgoniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15315 Boswellia carterii Species Burseraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15736 Liatris spicata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21822 Berberis crataegina Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2633 Baccharis minutiflora Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8198 Podocarpus montanus Species Podocarpaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7011 Chamomilla recutita n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO19556 Clathrina clathrus Species Clathrinidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18684 Calophyllum thwaitesii Species Calophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9469 Digitalis obscura Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27517 Crinum latifolium Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9714 Symphyopappus compressus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11064 Haemanthus toxicarius Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23989 Cyclamen neapolitanum Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25530 Daphne blagayana Species Thymelaeaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21101 Felicia amelloides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10449 Arctium lappa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4061 Trollius europaeus Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO878 Hannoa undulata Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1333 Maytenus chiapensis Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13459 Nitraria tangutorum Species Nitrariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12097 Prumnopitys ferruginea Species Podocarpaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29440 Sarcomyxa serotina Species Tricholomataceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10009 Oxylobus arbutifolius n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO21951 Paramignya griffithii Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4442 Artemisia austriaca Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22978 Morus tinctoria Species Sulidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO81 Erythrina orientalis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9750 Dysoxylum malabaricum Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26656 Heliotropium hirsutissimum Species Heliotropiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3215 Phora atra Species Phoridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO546 Candida albicans Species Debaryomycetaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8402 Thevetia peruviana Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8707.1 Pueraria montana var. lobata Varieties Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO819 Heliotropium olgae Species Heliotropiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12152 Nicotiana raimondii Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5710 Michelia rajaniana Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1288 Phora scalaris Species Phoridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7127 Artemisia alba Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2076 Coffea bengalensis Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9830 Arum maximum Species Araceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9944 Salisaeta longa Species Rhodothermaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO1572.1 Artemisia dracunculus var. glauca Varieties Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20453 Cayratia japonica Species Vitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8087 Aglaia foveolata Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9318 Stevia serrata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5348 Colletotrichum acutatum Species Glomerellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO924 Russula subnigricans Species Russulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13751 Eupatorium leptophyllum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9045 Aegiceras majus Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6338 Chilo auricilius Species Crambidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13489 Mahonia nepalensis n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO12482 Strobilomyces floccopus Species Boletaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17136 Centaurea coronopifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17674 Bishopanthus soliceps n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO16555 Acanthoscelides obtectus Species Chrysomelidae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference
NPO46434 Cymbopogon jwarancusa Hydroalcoholic extract n.a. 0.88 n.a. n.a. % PMID[37714225]
NPO50863 Atraphaxis pyrifolia Hexane extract n.a. 10.12 n.a. n.a. % PMID[38398586]
NPO8402 Thevetia peruviana n.a. Bark 2.06 n.a. n.a. % PMID[39027575]

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT745 Individual protein G-protein coupled bile acid receptor 1 Homo sapiens EC50 > 10000.0 nM PMID[19911773]
NPT745 Individual protein G-protein coupled bile acid receptor 1 Homo sapiens Efficacy = 0.0 % PMID[19911773]
NPT540 Individual protein Bile acid receptor FXR Homo sapiens EC50 = 0.0 nM PMID[19911773]
NPT741 Individual protein Tyrosinase Homo sapiens Inhibition = -2.4 % PMID[14510598]
NPT459 Individual protein Human immunodeficiency virus type 1 reverse transcriptase Human immunodeficiency virus 1 IC50 = 2.1 ug.mL-1 PMID[19515569]
NPT440 Individual protein Quinone oxidoreductase Mus musculus CD > 10.0 ug ml-1 PMID[14510596]

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT319 Cell line B16 Mus musculus ED50 = 0.35 uM PMID[12027734]
NPT319 Cell line B16 Mus musculus IC50 = 25400.0 nM PMID[12027734]
NPT165 Cell line HeLa Homo sapiens IC50 > 10.0 ug.mL-1 PMID[16038541]
NPT1171 Cell line HEp-2 Homo sapiens IC50 > 10.0 ug.mL-1 PMID[16038541]
NPT189 Cell line Vero Chlorocebus aethiops IC50 > 10.0 ug.mL-1 PMID[16038541]
NPT113 Cell line RAW264.7 Mus musculus IC50 > 400.0 nM PMID[20192236]
NPT839 Cell line L6 Rattus norvegicus IC50 > 90000.0 nM PMID[21438586]
NPT113 Cell line RAW264.7 Mus musculus IC50 = 38500.0 nM PMID[24909081]
NPT113 Cell line RAW264.7 Mus musculus Activity = 89.6 % PMID[24909081]
NPT165 Cell line HeLa Homo sapiens IC50 > 500000.0 nM PMID[29120172]
NPT2245 Cell line SiHa Homo sapiens IC50 > 500000.0 nM PMID[29120172]
NPT83 Cell line MCF7 Homo sapiens IC50 > 500000.0 nM PMID[29120172]
NPT82 Cell line MDA-MB-231 Homo sapiens IC50 > 500000.0 nM PMID[29120172]
NPT90 Cell line DU-145 Homo sapiens IC50 > 500000.0 nM PMID[29120172]
NPT91 Cell line KB Homo sapiens IC50 > 500000.0 nM PMID[29120172]
NPT1171 Cell line HEp-2 Homo sapiens IC50 > 500000.0 nM PMID[29120172]
NPT189 Cell line Vero Chlorocebus aethiops IC50 > 500000.0 nM PMID[29120172]
NPT71 Cell line HEK293 Homo sapiens IC50 > 500000.0 nM PMID[29120172]
NPT2245 Cell line SiHa Homo sapiens CC50 > 500000.0 nM PMID[29120172]
NPT165 Cell line HeLa Homo sapiens CC50 > 500000.0 nM PMID[29120172]
NPT83 Cell line MCF7 Homo sapiens CC50 > 500000.0 nM PMID[29120172]
NPT82 Cell line MDA-MB-231 Homo sapiens CC50 > 500000.0 nM PMID[29120172]
NPT90 Cell line DU-145 Homo sapiens CC50 > 500000.0 nM PMID[29120172]
NPT91 Cell line KB Homo sapiens CC50 > 500000.0 nM PMID[29120172]
NPT1171 Cell line HEp-2 Homo sapiens CC50 > 500000.0 nM PMID[29120172]
NPT189 Cell line Vero Chlorocebus aethiops CC50 > 500000.0 nM PMID[29120172]
NPT71 Cell line HEK293 Homo sapiens CC50 > 500000.0 nM PMID[29120172]
NPT844 Organism Trypanosoma brucei rhodesiense Trypanosoma brucei rhodesiense IC50 > 90000.0 nM PMID[21438586]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. EC50 = 77000.0 nM PMID[24079775]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 = 38800.0 nM PMID[24909081]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Inhibition < 50.0 % PMID[25927586]
NPT485 Organism Plasmodium falciparum (isolate K1 / Thailand) Plasmodium falciparum K1 IC50 = 4700.0 nM PMID[21438586]

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC43300 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
0.8571 High Similarity NPC159497
0.8235 Intermediate Similarity NPC103754
0.7647 Intermediate Similarity NPC604288
0.7358 Intermediate Similarity NPC201459
0.7222 Intermediate Similarity NPC63020
0.6909 Remote Similarity NPC475726
0.6786 Remote Similarity NPC472740
0.6607 Remote Similarity NPC108131
0.6491 Remote Similarity NPC474484
0.6429 Remote Similarity NPC57469
0.6379 Remote Similarity NPC175410
0.6167 Remote Similarity NPC475700
0.614 Remote Similarity NPC305835
0.6111 Remote Similarity NPC192638
0.6111 Remote Similarity NPC25511
0.6111 Remote Similarity NPC600137
0.6071 Remote Similarity NPC293803
0.6 Remote Similarity NPC472738
0.6 Remote Similarity NPC472739
0.5902 Remote Similarity NPC4643
0.5902 Remote Similarity NPC292553
0.5833 Remote Similarity NPC192744
0.5763 Remote Similarity NPC91665
0.5738 Remote Similarity NPC611062
0.5714 Remote Similarity NPC102708
0.5636 Remote Similarity NPC35652
0.5593 Remote Similarity NPC269396
0.5556 Remote Similarity NPC483719
0.5397 Remote Similarity NPC478917
0.5385 Remote Similarity NPC221421
0.537 Remote Similarity NPC473225
0.5345 Remote Similarity NPC197701
0.5323 Remote Similarity NPC472743
0.5323 Remote Similarity NPC474482
0.5303 Remote Similarity NPC206878
0.5263 Remote Similarity NPC80297
0.5263 Remote Similarity NPC475727
0.5263 Remote Similarity NPC116119
0.5254 Remote Similarity NPC248830
0.5254 Remote Similarity NPC212241
0.5254 Remote Similarity NPC285982
0.5246 Remote Similarity NPC145143
0.5161 Remote Similarity NPC474233
0.5156 Remote Similarity NPC473742
0.5152 Remote Similarity NPC601275
0.5147 Remote Similarity NPC475416
0.5147 Remote Similarity NPC483465
0.5085 Remote Similarity NPC202540
0.5082 Remote Similarity NPC23884
0.5082 Remote Similarity NPC74595
0.5082 Remote Similarity NPC215843
0.5082 Remote Similarity NPC264665
0.5079 Remote Similarity NPC471900
0.5077 Remote Similarity NPC471901
0.5072 Remote Similarity NPC483464

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC43300 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
NPD

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data