Natural Product: NPC226333

Natural Product IDNPC226333
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
PEFASEPMJYRQBW-HKWQTAEVSA-N
IUPAC Name n.a.
Synonyms
Synthetic Gene Cluster n.a.
ChEMBL Identifier n.a.
PubChem CID 5281693
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0000334] Flavonoids
        • [CHEMONTID:0001111] Flavonoid glycosides
          • [CHEMONTID:0001583] Flavonoid O-glycosides
            • [CHEMONTID:0003533] Flavonoid-7-O-glycosides

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey PEFASEPMJYRQBW-HKWQTAEVSA-N
Standard InCHI InChI=1S/C33H40O19/c1-10-19(36)23(40)26(43)31(47-10)46-9-17-21(38)25(42)28(45)33(51-17)52-30-22(39)18-15(35)7-14(49-32-27(44)24(41)20(37)11(2)48-32)8-16(18)50-29(30)12-3-5-13(34)6-4-12/h3-8,10-11,17,19-21,23-28,31-38,40-45H,9H2,1-2H3/t10-,11-,17+,19-,20-,21-,23+,24+,25-,26+,27+,28+,31+,32-,33-/m0/s1
SMILES C[C@H]1[C@@H]([C@H]([C@H]([C@H](OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)Oc2c(=O)c3c(cc(cc3oc2c2ccc(cc2)O)O[C@H]2[C@@H]([C@@H]([C@H]([C@H](C)O2)O)O)O)O)O)O)O)O1)O)O)O

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   740.22 Volume:   673.908
?
Van der Waals volume.
Dense:   1.098 LogP:   0.791
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   1.305
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -2.183
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   8.0 Rigid Bonds:   36.0
TPSA:   308.12
?
Topological Polar Surface Area.
H-Bond Acceptor:   19.0
H-Bond Donor:   11.0 Rings:   6.0
Heavy Atoms:   19.0

MedChem Properties

QED Drug-Likeness Score:   0.11 GASA:   1.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   5.291 Fsp3:   0.545
MCE-18:   150.706
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Accepted
Pfizer Rule:   Rejected GSK Rule:   Accepted
Golden Triangle Rule:   Accepted BMS Rule:   1
Chelating Alert:   0 PAINS Alert:   0
Colloidal aggregators:   0.631 Fluc inhibitor:   0.287
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.685
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.527
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.164 Promiscuous compounds:   0.524

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -6.603 MDCK Permeability:   -4.968
Pgp-inhibitor:   0.0 Pgp-substrate:   0.994
PAMPA:   1.0
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.208
20% Bioavailability (F20%):   0.036 30% Bioavailability (F30%):   0.907
50% Bioavailability (F50%):   0.999

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.0 MRP1:   0.002
Plasma Protein Binding (PPB):   76.377% Volume Distribution (VD):   -0.094
Fu: 20.831%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   0.997
OATP1B3 inhibitor:   1.0 BCRP inhibitor:   0.158
BSEP inhibitor:   0.052

ADMET: Metabolism

CYP1A2-inhibitor:   0.0 CYP1A2-substrate:   0.0
CYP2C19-inhibitor:   0.0 CYP2C19-substrate:   0.0
CYP2C9-inhibitor:   0.0 CYP2C9-substrate:   0.0
CYP2D6-inhibitor:   0.0 CYP2D6-substrate:   0.0
CYP3A4-inhibitor:   0.0 CYP3A4-substrate:   0.967
CYP2B6-substrate:   0.0 CYP2C8-inhibitor:   0.962
HLM stability:   0.096
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  0.801 Half-life (T1/2):  6.326

ADMET: Toxicity

hERG Blockers:  0.006 hERG Blockers (10um):  0.122
Human Hepatotoxicity (H-HT):  0.472 Drug-induced Liver Injury (DILI):  0.968
AMES Toxicity:  0.83 Rat Oral Acute Toxicity:  0.004
Maximum Recommended Daily Dose:  0.005 Skin Sensitization:  0.993
Carcinogencity:  0.009 Eye Corrosion:  0.0
Eye Irritation:  0.035 Respiratory Toxicity:  0.001
Drug-induced Neurotoxicity:  0.0 Ototoxicity:  0.992
Hematotoxicity:  0.05 Drug-induced Nephrotoxicity:  0.678
Genotoxicity:  0.316 RPMI-8226 Immunitoxicity:  0.297
A549 Cytotoxicity:  0.279 Hek293 Cytotoxicity:  0.234
BCF:   0.438
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   3.055
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   4.726
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   3.749
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO784 Sinapis alba Species Brassicaceae Eukaryota n.a. seed n.a. DOI[10.1007/s11418-005-0009-z]
NPO29027 Khaya grandifoliola Species Meliaceae Eukaryota n.a. seed n.a. PMID[10661881]
NPO1086 Botrytis cinerea Species Sclerotiniaceae Eukaryota n.a. n.a. n.a. PMID[10691704]
NPO16612 Streptomyces aureoverticillatus Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[15332863]
NPO1086 Botrytis cinerea Species Sclerotiniaceae Eukaryota n.a. n.a. n.a. PMID[16378371]
NPO1086 Botrytis cinerea Species Sclerotiniaceae Eukaryota n.a. n.a. n.a. PMID[16643065]
NPO15741 Embelia ribes Species Primulaceae Eukaryota n.a. leaf n.a. PMID[17124632]
NPO15741 Embelia ribes Species Primulaceae Eukaryota n.a. fruit n.a. PMID[17124632]
NPO15741 Embelia ribes Species Primulaceae Eukaryota roots n.a. n.a. PMID[17125236]
NPO15741 Embelia ribes Species Primulaceae Eukaryota n.a. n.a. n.a. PMID[17125236]
NPO8025 Aaptos ciliata Species Suberitidae Eukaryota n.a. n.a. n.a. PMID[18257536]
NPO5325 Lobophytum durum Species Alcyoniidae Eukaryota n.a. n.a. n.a. PMID[19177635]
NPO5325 Lobophytum durum Species Alcyoniidae Eukaryota n.a. n.a. n.a. PMID[19433363]
NPO10682 Cystoseira mediterranea Species Sargassaceae Eukaryota n.a. n.a. n.a. PMID[2045820]
NPO2765 Oxytropis falcata Species Fabaceae Eukaryota n.a. Sunan County, Gansu Province, China 2006-JUN PMID[20684529]
NPO5608 Croton gratissimus Species Euphorbiaceae Eukaryota n.a. stem n.a. PMID[22032651]
NPO5608 Croton gratissimus Species Euphorbiaceae Eukaryota n.a. leaf n.a. PMID[22032651]
NPO2765 Oxytropis falcata Species Fabaceae Eukaryota whole plant Guide County, Qinghai Province, China 2008-AUG PMID[22775441]
NPO8257 Carpha glomerata Species Cyperaceae Eukaryota n.a. n.a. n.a. PMID[30219526]
NPO1086 Botrytis cinerea Species Sclerotiniaceae Eukaryota n.a. n.a. n.a. PMID[32705864]
NPO6065 Brassica carinata Species Brassicaceae Eukaryota n.a. n.a. n.a. PMID[36599374]
NPO784 Sinapis alba Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO29027 Khaya grandifoliola Species Meliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO2921 Angelica acutiloba Species Apiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4536 Remirea maritima Species Cyperaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO19849 Melilotus officinalis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15741 Embelia ribes Species Primulaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO3344 Bryonia alba Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8707.1 Pueraria montana var. lobata Varieties Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6065 Brassica carinata Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7845 Tephrosia elata Species Geometridae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO29123 Staphisagria macrosperma Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6859 Eurycoma harmandiana Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO1086 Botrytis cinerea Species Sclerotiniaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10682 Cystoseira mediterranea Species Sargassaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15553 Barringtonia acutangula Species Lecythidaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5325 Lobophytum durum Species Alcyoniidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6807 Ranunculus asiaticus Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5857 Achlya heterosexualis Species Saprolegniaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO3151 Solanum lanceolatum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8025 Aaptos ciliata Species Suberitidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8790 Cyanostegia angustifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4901 Arnica mollis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16182 Desmodium canadense Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7418 Eucalyptus resinifera Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO1281 Schleichera trijuga Species Sapindaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16096 Astragalus adsurgens Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO2765 Oxytropis falcata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8938 Halobacillus litoralis Species Bacillaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO4123 Trididemnum cyanophorum Species Didemnidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7032 Marasmiellus troyanus Species Omphalotaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16612 Streptomyces aureoverticillatus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO17325 Streptomyces virens Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO8257 Carpha glomerata Species Cyperaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO784 Sinapis alba Species Brassicaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO784 Sinapis alba Species Brassicaceae Eukaryota n.a. n.a. Database[FooDB]
NPO784 Sinapis alba Species Brassicaceae Eukaryota n.a. n.a. Database[FooDB]
NPO6859 Eurycoma harmandiana Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO784 Sinapis alba Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO1473 Xanthorhiza simplicissima Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO3344 Bryonia alba Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15741 Embelia ribes Species Primulaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO2921 Angelica acutiloba Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7845 Tephrosia elata Species Geometridae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO784 Sinapis alba Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3344 Bryonia alba Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2921 Angelica acutiloba Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO373 Viburnum erubescens Species Adoxaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8707.1 Pueraria montana var. lobata Varieties Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6859 Eurycoma harmandiana Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1473 Xanthorhiza simplicissima Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15741 Embelia ribes Species Primulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8790 Cyanostegia angustifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2131 Dactylorhiza viridis Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7845 Tephrosia elata Species Geometridae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO29123 Staphisagria macrosperma Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5457 Dalbergia congestiflora Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20591 Alocasia cucullata Species Araceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7845 Tephrosia elata Species Geometridae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO784 Sinapis alba Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO1473 Xanthorhiza simplicissima Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO2921 Angelica acutiloba Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO2921 Angelica acutiloba Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO8707.1 Pueraria montana var. lobata Varieties Fabaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO784 Sinapis alba Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO4123 Trididemnum cyanophorum Species Didemnidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO373 Viburnum erubescens Species Adoxaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9594 Lysimachia fordiana Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2131 Dactylorhiza viridis Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6065 Brassica carinata Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8790 Cyanostegia angustifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29123 Staphisagria macrosperma Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO784 Sinapis alba Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8938 Halobacillus litoralis Species Bacillaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO16182 Desmodium canadense Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3344 Bryonia alba Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13474 Euphrasia genargentea Species Orobanchaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO593 Wikstroemia viridiflora Species Thymelaeaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8025 Aaptos ciliata Species Suberitidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3838 Chrysosporum ovalisporum Species Aphanizomenonaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO6807 Ranunculus asiaticus Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5325 Lobophytum durum Species Alcyoniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2670 Maytenus chuchuhuasha Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10682 Cystoseira mediterranea Species Sargassaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4901 Arnica mollis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2439 Diplopterygium glaucum Species Gleicheniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3151 Solanum lanceolatum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16096 Astragalus adsurgens Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10038.1 Abies pinsapo var. marocana Varieties Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9867 Ixeris debilis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15741 Embelia ribes Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2765 Oxytropis falcata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1281 Schleichera trijuga Species Sapindaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7845 Tephrosia elata Species Geometridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10132 Schizophyllum lobatum Species Schizophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7418 Eucalyptus resinifera Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1293 Streptomyces matensis Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO5857 Achlya heterosexualis Species Saprolegniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9091 Orthosiphon spicatus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2921 Angelica acutiloba Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11795 Plantago stauntoni Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1473 Xanthorhiza simplicissima Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6859 Eurycoma harmandiana Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9737 Ampelocera edentula Species Ulmaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8257 Carpha glomerata Species Cyperaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10947 Aspilia parvifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5086 Alternaria macrospora Species Pleosporaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1086 Botrytis cinerea Species Sclerotiniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10447 Triclisia subcordata Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7032 Marasmiellus troyanus Species Omphalotaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4536 Remirea maritima Species Cyperaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21472 Pterolobium hexapetalum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7887 Schultesia guianensis Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5457 Dalbergia congestiflora Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9998 Abies excelsa Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5608 Croton gratissimus Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13641 Napoleonaea vogelii Species Lecythidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13520 Craibiodendron yunnanense Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15553 Barringtonia acutangula Species Lecythidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19849 Melilotus officinalis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15206 Mabea fistulifera Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29027 Khaya grandifoliola Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20591 Alocasia cucullata Species Araceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16612 Streptomyces aureoverticillatus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO8707.1 Pueraria montana var. lobata Varieties Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17325 Streptomyces virens Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO12581 Corydalis densiflora Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC226333 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC186816
0.8312 Intermediate Similarity NPC249281
0.8101 Intermediate Similarity NPC46420
0.8095 Intermediate Similarity NPC173582
0.8095 Intermediate Similarity NPC265885
0.8095 Intermediate Similarity NPC181465
0.8095 Intermediate Similarity NPC215710
0.8095 Intermediate Similarity NPC473438
0.8095 Intermediate Similarity NPC253788
0.8049 Intermediate Similarity NPC276377
0.7882 Intermediate Similarity NPC44931
0.7849 Intermediate Similarity NPC25523
0.7753 Intermediate Similarity NPC142142
0.7711 Intermediate Similarity NPC116458
0.7711 Intermediate Similarity NPC246943
0.7586 Intermediate Similarity NPC65563
0.7586 Intermediate Similarity NPC470949
0.7586 Intermediate Similarity NPC150164
0.75 Intermediate Similarity NPC473571
0.75 Intermediate Similarity NPC110941
0.7471 Intermediate Similarity NPC67105
0.7386 Intermediate Similarity NPC203259
0.7386 Intermediate Similarity NPC33054
0.7386 Intermediate Similarity NPC210073
0.7386 Intermediate Similarity NPC176740
0.7386 Intermediate Similarity NPC471725
0.7386 Intermediate Similarity NPC134532
0.7386 Intermediate Similarity NPC602582
0.7253 Intermediate Similarity NPC32641
0.7253 Intermediate Similarity NPC256188
0.7253 Intermediate Similarity NPC72016
0.7229 Intermediate Similarity NPC271692
0.7143 Intermediate Similarity NPC470443
0.7113 Intermediate Similarity NPC480441
0.7108 Intermediate Similarity NPC297987
0.7065 Intermediate Similarity NPC35119
0.6966 Remote Similarity NPC471079
0.6915 Remote Similarity NPC476472
0.6915 Remote Similarity NPC294815
0.6915 Remote Similarity NPC473073
0.6915 Remote Similarity NPC16194
0.6897 Remote Similarity NPC605784
0.6889 Remote Similarity NPC39834
0.6889 Remote Similarity NPC227508
0.6848 Remote Similarity NPC126784
0.6848 Remote Similarity NPC241423
0.6813 Remote Similarity NPC22062
0.6813 Remote Similarity NPC473634
0.6813 Remote Similarity NPC303913
0.6813 Remote Similarity NPC138811
0.6804 Remote Similarity NPC121703
0.6706 Remote Similarity NPC158674
0.6702 Remote Similarity NPC209296
0.6702 Remote Similarity NPC473327
0.6667 Remote Similarity NPC111929
0.6667 Remote Similarity NPC320283
0.6667 Remote Similarity NPC240306
0.6667 Remote Similarity NPC41121
0.6667 Remote Similarity NPC611303
0.6596 Remote Similarity NPC12013
0.6596 Remote Similarity NPC11432
0.6596 Remote Similarity NPC477613
0.6588 Remote Similarity NPC108831
0.6588 Remote Similarity NPC182634
0.6566 Remote Similarity NPC189564
0.6495 Remote Similarity NPC101636
0.6471 Remote Similarity NPC331652
0.6465 Remote Similarity NPC203145
0.6452 Remote Similarity NPC156869
0.6364 Remote Similarity NPC14187
0.6344 Remote Similarity NPC67326
0.6327 Remote Similarity NPC221342
0.6327 Remote Similarity NPC476470
0.6322 Remote Similarity NPC136042
0.6316 Remote Similarity NPC64425
0.6304 Remote Similarity NPC251417
0.6263 Remote Similarity NPC602448
0.6262 Remote Similarity NPC209550
0.6207 Remote Similarity NPC289667
0.6207 Remote Similarity NPC238376
0.6162 Remote Similarity NPC470449
0.6122 Remote Similarity NPC486577
0.6061 Remote Similarity NPC470447
0.6023 Remote Similarity NPC127546
0.6023 Remote Similarity NPC57625
0.6023 Remote Similarity NPC19709
0.6023 Remote Similarity NPC173637
0.6023 Remote Similarity NPC317489
0.6023 Remote Similarity NPC223424
0.6023 Remote Similarity NPC600591
0.6022 Remote Similarity NPC116864
0.6022 Remote Similarity NPC244776
0.602 Remote Similarity NPC122467
0.602 Remote Similarity NPC606657
0.6019 Remote Similarity NPC292019
0.6019 Remote Similarity NPC202908
0.6 Remote Similarity NPC298171
0.6 Remote Similarity NPC275454
0.5979 Remote Similarity NPC488073
0.5979 Remote Similarity NPC488074
0.5979 Remote Similarity NPC64051
0.5938 Remote Similarity NPC479405
0.5918 Remote Similarity NPC65711
0.5905 Remote Similarity NPC277532
0.59 Remote Similarity NPC89127
0.5895 Remote Similarity NPC187379
0.5889 Remote Similarity NPC84362
0.5889 Remote Similarity NPC27640
0.5876 Remote Similarity NPC129264
0.5876 Remote Similarity NPC479404
0.5818 Remote Similarity NPC138990
0.5816 Remote Similarity NPC470125
0.5789 Remote Similarity NPC483159
0.5789 Remote Similarity NPC483160
0.5766 Remote Similarity NPC175429
0.5745 Remote Similarity NPC476215
0.5743 Remote Similarity NPC85751
0.5743 Remote Similarity NPC19240
0.5728 Remote Similarity NPC470455
0.5714 Remote Similarity NPC204693
0.57 Remote Similarity NPC473623
0.57 Remote Similarity NPC270448
0.5688 Remote Similarity NPC298666
0.5673 Remote Similarity NPC89052
0.5667 Remote Similarity NPC77672
0.5667 Remote Similarity NPC133671
0.5667 Remote Similarity NPC135391
0.5667 Remote Similarity NPC78263
0.5667 Remote Similarity NPC250069
0.5657 Remote Similarity NPC153755
0.5652 Remote Similarity NPC59534
0.5644 Remote Similarity NPC270675
0.5644 Remote Similarity NPC488089
0.5644 Remote Similarity NPC195685
0.5638 Remote Similarity NPC223747
0.5636 Remote Similarity NPC474522
0.5631 Remote Similarity NPC470446
0.5604 Remote Similarity NPC323593
0.5604 Remote Similarity NPC203500
0.56 Remote Similarity NPC479403
0.5588 Remote Similarity NPC80068
0.5579 Remote Similarity NPC66087
0.5577 Remote Similarity NPC214621
0.5577 Remote Similarity NPC34267
0.5566 Remote Similarity NPC173837
0.5556 Remote Similarity NPC473043
0.5556 Remote Similarity NPC135599
0.5556 Remote Similarity NPC73855
0.5556 Remote Similarity NPC113968
0.5556 Remote Similarity NPC328940
0.5556 Remote Similarity NPC277174
0.5556 Remote Similarity NPC606877
0.5545 Remote Similarity NPC229409
0.5543 Remote Similarity NPC305811
0.5543 Remote Similarity NPC24043
0.5536 Remote Similarity NPC241781
0.5534 Remote Similarity NPC292929
0.5534 Remote Similarity NPC470445
0.5524 Remote Similarity NPC11468
0.5521 Remote Similarity NPC265115
0.5514 Remote Similarity NPC303694
0.5514 Remote Similarity NPC164704
0.551 Remote Similarity NPC163242
0.551 Remote Similarity NPC272068
0.5495 Remote Similarity NPC39360
0.5495 Remote Similarity NPC29763
0.5495 Remote Similarity NPC210003
0.5495 Remote Similarity NPC348541
0.5487 Remote Similarity NPC192539
0.5484 Remote Similarity NPC27942
0.5481 Remote Similarity NPC470450
0.5481 Remote Similarity NPC472994
0.5481 Remote Similarity NPC135358
0.5455 Remote Similarity NPC473512
0.5455 Remote Similarity NPC65003
0.5455 Remote Similarity NPC129827
0.5455 Remote Similarity NPC605592
0.5437 Remote Similarity NPC471669
0.5435 Remote Similarity NPC265530
0.5426 Remote Similarity NPC219904
0.5408 Remote Similarity NPC139320
0.5408 Remote Similarity NPC609888
0.5405 Remote Similarity NPC480445
0.5393 Remote Similarity NPC54802
0.5393 Remote Similarity NPC197304
0.5385 Remote Similarity NPC473554
0.5385 Remote Similarity NPC36138
0.5375 Remote Similarity NPC146679
0.5357 Remote Similarity NPC156785
0.5357 Remote Similarity NPC162394
0.5333 Remote Similarity NPC288084
0.5333 Remote Similarity NPC223426
0.5326 Remote Similarity NPC476405
0.5315 Remote Similarity NPC488739
0.531 Remote Similarity NPC470720
0.5294 Remote Similarity NPC483414
0.5294 Remote Similarity NPC483415
0.5278 Remote Similarity NPC480796
0.5278 Remote Similarity NPC472993
0.5273 Remote Similarity NPC470716

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC226333 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8068 Intermediate Similarity NPD7251 Phase 2
0.7386 Intermediate Similarity NPD6797 Phase 2
0.734 Intermediate Similarity NPD7808 Phase 3
0.6702 Remote Similarity NPD7054 Phase 4
0.5234 Remote Similarity NPD7472 Pre-clinical

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data