Natural Product: NPC1712

Natural Product IDNPC1712
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
PFLDHZMNADJRRZ-GFAWZACZSA-N
IUPAC Name n.a.
Synonyms
Synthetic Gene Cluster n.a.
ChEMBL Identifier n.a.
PubChem CID 101781232
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0000334] Flavonoids
        • [CHEMONTID:0001111] Flavonoid glycosides
          • [CHEMONTID:0001583] Flavonoid O-glycosides
            • [CHEMONTID:0003531] Flavonoid-3-O-glycosides

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey PFLDHZMNADJRRZ-GFAWZACZSA-N
Standard InCHI InChI=1S/C37H38O19/c1-14-27(44)30(47)32(49)36(52-14)51-13-24-28(45)31(48)35(55-25(43)8-4-15-3-6-19(40)22(9-15)50-2)37(54-24)56-34-29(46)26-21(42)11-17(38)12-23(26)53-33(34)16-5-7-18(39)20(41)10-16/h3-12,14,24,27-28,30-32,35-42,44-45,47-49H,13H2,1-2H3/b8-4+/t14-,24+,27-,28+,30+,31-,32+,35+,36+,37-/m0/s1
SMILES C[C@H]1[C@@H]([C@H]([C@H]([C@H](OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)Oc2c(=O)c3c(cc(cc3oc2c2ccc(c(c2)O)O)O)O)OC(=O)/C=C/c2ccc(c(c2)OC)O)O)O)O1)O)O)O

  Calculated Properties

Physi-Chem Properties

MedChem Properties

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

ADMET: Distribution

ADMET: Metabolism

ADMET: Excretion

ADMET: Toxicity

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO8171 Artocarpus altilis Species Moraceae Eukaryota bud covers n.a. n.a. PMID[11975520]
NPO8171 Artocarpus altilis Species Moraceae Eukaryota n.a. root n.a. PMID[12662107]
NPO5870 Xenia florida Species n.a. n.a. n.a. n.a. n.a. PMID[16643051]
NPO12386 Russula japonica Species Russulaceae Eukaryota fruiting body n.a. n.a. PMID[16989517]
NPO20045 Burkholderia cepacia Species Burkholderiaceae Bacteria n.a. n.a. n.a. PMID[3839140]
NPO20045 Burkholderia cepacia Species Burkholderiaceae Bacteria n.a. n.a. n.a. PMID[7684040]
NPO5870 Xenia florida Species n.a. n.a. n.a. n.a. n.a. PMID[9868153]
NPO10892 Xanthorrhoea resinosa Species Asphodelaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8171 Artocarpus altilis Species Moraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20045 Burkholderia cepacia Species Burkholderiaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO5380 Eucalyptus australiana Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10594 Centaurea solstitialis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14379 Onobrychis viciifolia Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12386 Russula japonica Species Russulaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5870 Xenia florida Species n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO14274 Rhododendron mucronatum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7731 Lactuca serriola Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14075 Streptomyces viridogenes Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO12726 Piptostigma fugax Species Annonaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8171 Artocarpus altilis Species Moraceae Eukaryota n.a. n.a. Database[FooDB]
NPO8171 Artocarpus altilis Species Moraceae Eukaryota n.a. n.a. Database[FooDB]
NPO8171 Artocarpus altilis Species Moraceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO8171 Artocarpus altilis Species Moraceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO14274 Rhododendron mucronatum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO2469 Erythrophleum couminga Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14379 Onobrychis viciifolia Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7731 Lactuca serriola Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7731 Lactuca serriola Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14274 Rhododendron mucronatum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8171 Artocarpus altilis Species Moraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2469 Erythrophleum couminga Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14379 Onobrychis viciifolia Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14274 Rhododendron mucronatum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO2469 Erythrophleum couminga Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO8171 Artocarpus altilis Species Moraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO875 Cryptocarya oblata Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12386 Russula japonica Species Russulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2469 Erythrophleum couminga Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7608 Phelline lucida Species Phellinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7731 Lactuca serriola Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13192 Chara ceratophylla Species Characeae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16013 Inga velutina Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12726 Piptostigma fugax Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12035 Rhododendron ungerni Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14274 Rhododendron mucronatum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20585 Urochloa decumbens Species Poaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16306 Curcuma caesia Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13683 Cosmos diversifolius Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9342 Solenopsis punctaticeps Species Campanulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO206 Ormosia nobilis Species Limoniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1398 Trichodesma incanum Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11046 Ocimum pilosum Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5870 Xenia florida Species n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO10892 Xanthorrhoea resinosa Species Asphodelaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10594 Centaurea solstitialis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5380 Eucalyptus australiana Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20045 Burkholderia cepacia Species Burkholderiaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO12207 Lagochilus leiacanthus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14075 Streptomyces viridogenes Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO14379 Onobrychis viciifolia Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10928 Xenia obscuronata Species Xeniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3059 Erythrina pallida Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2046 Cathormion altissimum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12557 Strychnos tricalysioides Species Loganiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC1712 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
0.8932 High Similarity NPC162394
0.8348 Intermediate Similarity NPC487501
0.7843 Intermediate Similarity NPC89127
0.7647 Intermediate Similarity NPC487500
0.757 Intermediate Similarity NPC173837
0.7542 Intermediate Similarity NPC249560
0.75 Intermediate Similarity NPC473554
0.7478 Intermediate Similarity NPC21359
0.7478 Intermediate Similarity NPC460984
0.7476 Intermediate Similarity NPC122467
0.7458 Intermediate Similarity NPC487502
0.7227 Intermediate Similarity NPC72554
0.7222 Intermediate Similarity NPC89052
0.7203 Intermediate Similarity NPC275977
0.713 Intermediate Similarity NPC241781
0.6992 Remote Similarity NPC97817
0.6957 Remote Similarity NPC156785
0.6949 Remote Similarity NPC25946
0.6942 Remote Similarity NPC30011
0.6887 Remote Similarity NPC12013
0.6887 Remote Similarity NPC11432
0.6887 Remote Similarity NPC477613
0.6881 Remote Similarity NPC218161
0.6875 Remote Similarity NPC303694
0.687 Remote Similarity NPC470713
0.6636 Remote Similarity NPC221342
0.6636 Remote Similarity NPC476470
0.6604 Remote Similarity NPC203259
0.6604 Remote Similarity NPC33054
0.6604 Remote Similarity NPC176740
0.6604 Remote Similarity NPC471725
0.6604 Remote Similarity NPC134532
0.6604 Remote Similarity NPC602582
0.6577 Remote Similarity NPC602448
0.6557 Remote Similarity NPC487499
0.6514 Remote Similarity NPC473327
0.6504 Remote Similarity NPC231787
0.6396 Remote Similarity NPC476472
0.6396 Remote Similarity NPC294815
0.6396 Remote Similarity NPC16194
0.6381 Remote Similarity NPC95866
0.6333 Remote Similarity NPC480444
0.6325 Remote Similarity NPC470718
0.6288 Remote Similarity NPC33083
0.6283 Remote Similarity NPC223426
0.625 Remote Similarity NPC474522
0.623 Remote Similarity NPC192539
0.6228 Remote Similarity NPC483765
0.6228 Remote Similarity NPC81042
0.6147 Remote Similarity NPC155877
0.6055 Remote Similarity NPC173582
0.6055 Remote Similarity NPC265885
0.6055 Remote Similarity NPC181465
0.6055 Remote Similarity NPC215710
0.6055 Remote Similarity NPC473438
0.6055 Remote Similarity NPC253788
0.605 Remote Similarity NPC139571
0.6018 Remote Similarity NPC221288
0.6018 Remote Similarity NPC142142
0.6018 Remote Similarity NPC194836
0.6018 Remote Similarity NPC91493
0.6018 Remote Similarity NPC605081
0.6017 Remote Similarity NPC470712
0.6017 Remote Similarity NPC217520
0.6 Remote Similarity NPC483767
0.6 Remote Similarity NPC483769
0.6 Remote Similarity NPC483768
0.6 Remote Similarity NPC483766
0.5984 Remote Similarity NPC470719
0.5984 Remote Similarity NPC488740
0.5984 Remote Similarity NPC488736
0.5984 Remote Similarity NPC488733
0.5984 Remote Similarity NPC470717
0.5965 Remote Similarity NPC220173
0.595 Remote Similarity NPC474093
0.595 Remote Similarity NPC104910
0.5935 Remote Similarity NPC470720
0.5913 Remote Similarity NPC292929
0.5909 Remote Similarity NPC39834
0.5902 Remote Similarity NPC480445
0.5893 Remote Similarity NPC126784
0.5893 Remote Similarity NPC241423
0.5887 Remote Similarity NPC488737
0.5856 Remote Similarity NPC156869
0.5833 Remote Similarity NPC476215
0.5827 Remote Similarity NPC480470
0.5826 Remote Similarity NPC85751
0.5826 Remote Similarity NPC19240
0.582 Remote Similarity NPC295625
0.5812 Remote Similarity NPC214621
0.5812 Remote Similarity NPC34267
0.5798 Remote Similarity NPC477895
0.5766 Remote Similarity NPC67326
0.575 Remote Similarity NPC480441
0.5739 Remote Similarity NPC97119
0.5714 Remote Similarity NPC470416
0.5669 Remote Similarity NPC480442
0.5669 Remote Similarity NPC480472
0.5664 Remote Similarity NPC255157
0.5664 Remote Similarity NPC35167
0.5664 Remote Similarity NPC259896
0.5641 Remote Similarity NPC260504
0.5641 Remote Similarity NPC89809
0.5636 Remote Similarity NPC254855
0.5636 Remote Similarity NPC116864
0.5636 Remote Similarity NPC244776
0.5636 Remote Similarity NPC94610
0.5625 Remote Similarity NPC163242
0.5625 Remote Similarity NPC272068
0.5619 Remote Similarity NPC127546
0.5619 Remote Similarity NPC57625
0.5619 Remote Similarity NPC173637
0.5619 Remote Similarity NPC317489
0.5619 Remote Similarity NPC223424
0.5619 Remote Similarity NPC600591
0.5607 Remote Similarity NPC216496
0.5603 Remote Similarity NPC101399
0.5603 Remote Similarity NPC217822
0.5603 Remote Similarity NPC11847
0.5603 Remote Similarity NPC198938
0.5565 Remote Similarity NPC488734
0.5565 Remote Similarity NPC470443
0.5565 Remote Similarity NPC488735
0.5565 Remote Similarity NPC488739
0.5565 Remote Similarity NPC488732
0.5565 Remote Similarity NPC488738
0.5556 Remote Similarity NPC219904
0.5556 Remote Similarity NPC488078
0.5537 Remote Similarity NPC292019
0.5537 Remote Similarity NPC202908
0.5517 Remote Similarity NPC104883
0.5517 Remote Similarity NPC488679
0.5507 Remote Similarity NPC482521
0.5478 Remote Similarity NPC153755
0.5455 Remote Similarity NPC223747
0.5439 Remote Similarity NPC605592
0.5424 Remote Similarity NPC471669
0.5413 Remote Similarity NPC175107
0.5391 Remote Similarity NPC473571
0.5391 Remote Similarity NPC110941
0.5378 Remote Similarity NPC470445
0.5372 Remote Similarity NPC203145
0.5366 Remote Similarity NPC25523
0.5339 Remote Similarity NPC603079
0.5289 Remote Similarity NPC478277
0.5289 Remote Similarity NPC96605
0.5289 Remote Similarity NPC280642
0.5289 Remote Similarity NPC478276
0.5289 Remote Similarity NPC478275
0.5289 Remote Similarity NPC92815
0.5271 Remote Similarity NPC209550
0.5263 Remote Similarity NPC471079
0.5254 Remote Similarity NPC37668
0.5242 Remote Similarity NPC164704
0.5231 Remote Similarity NPC480443
0.5225 Remote Similarity NPC224530
0.5214 Remote Similarity NPC253521
0.5214 Remote Similarity NPC470125
0.5214 Remote Similarity NPC488073
0.5214 Remote Similarity NPC488074
0.5214 Remote Similarity NPC113836
0.5207 Remote Similarity NPC470446
0.518 Remote Similarity NPC475179
0.5177 Remote Similarity NPC482520
0.5177 Remote Similarity NPC482519
0.5172 Remote Similarity NPC65563
0.5172 Remote Similarity NPC470949
0.5172 Remote Similarity NPC304741
0.5161 Remote Similarity NPC219043
0.5133 Remote Similarity NPC170052
0.5133 Remote Similarity NPC135846
0.513 Remote Similarity NPC258044
0.513 Remote Similarity NPC217387
0.513 Remote Similarity NPC187379
0.5128 Remote Similarity NPC144097
0.5124 Remote Similarity NPC36138
0.512 Remote Similarity NPC470715
0.5093 Remote Similarity NPC111929
0.5093 Remote Similarity NPC320283
0.5093 Remote Similarity NPC41121
0.5085 Remote Similarity NPC154741
0.5083 Remote Similarity NPC205824
0.5081 Remote Similarity NPC189564
0.5042 Remote Similarity NPC483414
0.5042 Remote Similarity NPC477628
0.5041 Remote Similarity NPC473073
0.504 Remote Similarity NPC48984

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC1712 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.6604 Remote Similarity NPD6797 Phase 2
0.5167 Remote Similarity NPD7251 Phase 2

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data