Natural Product: NPC92815

Natural Product IDNPC92815
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
Kaempferol-3-O-(3'',4""-Diacetyl-2"",6""-Di-E-P-Coumaroyl)-Glucoside
IUPAC Name [(2R,3R,4S,5R,6S)-3,4-diacetyloxy-6-[5,7-dihydroxy-2-(4-hydroxyphenyl)-4-oxochromen-3-yl]oxy-5-[(E)-3-(4-hydroxyphenyl)prop-2-enoyl]oxyoxan-2-yl]methyl (E)-3-(4-hydroxyphenyl)prop-2-enoate
Synonyms
Synthetic Gene Cluster n.a.
ChEMBL Identifier CHEMBL3628130
PubChem CID 10328097
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0000334] Flavonoids
        • [CHEMONTID:0001111] Flavonoid glycosides
          • [CHEMONTID:0001583] Flavonoid O-glycosides
            • [CHEMONTID:0003678] Flavonoid 3-O-p-coumaroyl glycosides

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey IFLHDGGEJKVLAF-FEMPFSAESA-N
Standard InCHI InChI=1S/C43H36O17/c1-22(44)55-39-33(21-54-34(51)17-7-24-3-11-27(46)12-4-24)58-43(42(41(39)56-23(2)45)59-35(52)18-8-25-5-13-28(47)14-6-25)60-40-37(53)36-31(50)19-30(49)20-32(36)57-38(40)26-9-15-29(48)16-10-26/h3-20,33,39,41-43,46-50H,21H2,1-2H3/b17-7+,18-8+/t33-,39-,41+,42-,43+/m1/s1
SMILES CC(=O)O[C@@H]1[C@@H](COC(=O)/C=C/c2ccc(cc2)O)O[C@H]([C@@H]([C@H]1OC(=O)C)OC(=O)/C=C/c1ccc(cc1)O)Oc1c(=O)c2c(cc(cc2oc1c1ccc(cc1)O)O)O

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   824.2 Volume:   797.65
?
Van der Waals volume.
Dense:   1.033 LogP:   2.715
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   2.402
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -5.487
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   16.0 Rigid Bonds:   42.0
TPSA:   255.02
?
Topological Polar Surface Area.
H-Bond Acceptor:   17.0
H-Bond Donor:   5.0 Rings:   6.0
Heavy Atoms:   17.0

MedChem Properties

QED Drug-Likeness Score:   0.064 GASA:   0.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   4.702 Fsp3:   0.186
MCE-18:   127.843
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Accepted
Pfizer Rule:   Rejected GSK Rule:   Accepted
Golden Triangle Rule:   Accepted BMS Rule:   1
Chelating Alert:   0 PAINS Alert:   0
Colloidal aggregators:   1.0 Fluc inhibitor:   1.0
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.879
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.643
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.406 Promiscuous compounds:   0.816

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -6.115 MDCK Permeability:   -5.152
Pgp-inhibitor:   0.932 Pgp-substrate:   0.024
PAMPA:   0.864
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.0
20% Bioavailability (F20%):   0.981 30% Bioavailability (F30%):   1.0
50% Bioavailability (F50%):   1.0

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.0 MRP1:   0.006
Plasma Protein Binding (PPB):   92.122% Volume Distribution (VD):   -0.049
Fu: 8.954%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   1.0
OATP1B3 inhibitor:   1.0 BCRP inhibitor:   0.067
BSEP inhibitor:   1.0

ADMET: Metabolism

CYP1A2-inhibitor:   0.0 CYP1A2-substrate:   0.19
CYP2C19-inhibitor:   0.0 CYP2C19-substrate:   0.521
CYP2C9-inhibitor:   0.0 CYP2C9-substrate:   0.851
CYP2D6-inhibitor:   0.019 CYP2D6-substrate:   1.0
CYP3A4-inhibitor:   0.0 CYP3A4-substrate:   0.996
CYP2B6-substrate:   0.0 CYP2C8-inhibitor:   1.0
HLM stability:   0.983
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  2.573 Half-life (T1/2):  2.277

ADMET: Toxicity

hERG Blockers:  0.106 hERG Blockers (10um):  0.405
Human Hepatotoxicity (H-HT):  0.664 Drug-induced Liver Injury (DILI):  0.985
AMES Toxicity:  0.893 Rat Oral Acute Toxicity:  0.07
Maximum Recommended Daily Dose:  0.874 Skin Sensitization:  1.0
Carcinogencity:  0.289 Eye Corrosion:  0.0
Eye Irritation:  0.307 Respiratory Toxicity:  0.009
Drug-induced Neurotoxicity:  0.078 Ototoxicity:  0.248
Hematotoxicity:  0.013 Drug-induced Nephrotoxicity:  0.182
Genotoxicity:  1.0 RPMI-8226 Immunitoxicity:  0.071
A549 Cytotoxicity:  0.831 Hek293 Cytotoxicity:  0.995
BCF:   0.703
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   4.132
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   4.967
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   4.857
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO4240 Elephantopus tomentosus Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[10075766]
NPO19205 Buxus sempervirens Species Buxaceae Eukaryota roots n.a. n.a. PMID[10346940]
NPO20523 Bacillus subtilis Species Bacillaceae Bacteria n.a. n.a. n.a. PMID[11112781]
NPO20523 Bacillus subtilis Species Bacillaceae Bacteria n.a. n.a. n.a. PMID[153409]
NPO658 Leucopaxillus gentianeus Species Tricholomataceae Eukaryota n.a. n.a. n.a. PMID[15568769]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota Fruits n.a. n.a. PMID[16309325]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. Seoul, Korea 2000-Jun PMID[16643034]
NPO658 Leucopaxillus gentianeus Species Tricholomataceae Eukaryota fruiting bodies n.a. n.a. PMID[17190463]
NPO28092 Xyris pterygoblephara Species Xyridaceae Eukaryota n.a. n.a. n.a. PMID[17870137]
NPO4240 Elephantopus tomentosus Species Asteraceae Eukaryota n.a. stem n.a. PMID[18239317]
NPO4240 Elephantopus tomentosus Species Asteraceae Eukaryota n.a. root n.a. PMID[18239317]
NPO28092 Xyris pterygoblephara Species Xyridaceae Eukaryota n.a. n.a. n.a. PMID[18462007]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota fruit n.a. n.a. PMID[18505286]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota fruit n.a. n.a. PMID[19650637]
NPO6850 Typha domingensis Species Typhaceae Eukaryota n.a. aerial part n.a. PMID[21417376]
NPO20523 Bacillus subtilis Species Bacillaceae Bacteria n.a. n.a. n.a. PMID[21673922]
NPO7622 Monanchora pulchra Species Crambeidae Eukaryota n.a. n.a. n.a. PMID[21848268]
NPO7622 Monanchora pulchra Species Crambeidae Eukaryota n.a. Urup Island (4557,9 N; 15044,9 E; depth 66 m) 2008-AUG PMID[21848268]
NPO20523 Bacillus subtilis Species Bacillaceae Bacteria n.a. n.a. n.a. PMID[23265519]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota fruits n.a. n.a. PMID[23305920]
NPO20523 Bacillus subtilis Species Bacillaceae Bacteria n.a. n.a. n.a. PMID[23317005]
NPO20523 Bacillus subtilis Species Bacillaceae Bacteria n.a. n.a. n.a. PMID[23488669]
NPO19205 Buxus sempervirens Species Buxaceae Eukaryota n.a. n.a. n.a. PMID[26722868]
NPO20523 Bacillus subtilis Species Bacillaceae Bacteria n.a. n.a. n.a. PMID[27524650]
NPO20523 Bacillus subtilis Species Bacillaceae Bacteria n.a. n.a. n.a. PMID[29115831]
NPO21679 Nuphar lutea Species Nymphaeaceae Eukaryota n.a. n.a. n.a. PMID[31182315]
NPO20523 Bacillus subtilis Species Bacillaceae Bacteria n.a. n.a. n.a. PMID[31287310]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. n.a. n.a. PMID[32141747]
NPO17226 Burkholderia pyrrocinia Species Burkholderiaceae Bacteria n.a. n.a. n.a. PMID[4955234]
NPO21679 Nuphar lutea Species Nymphaeaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5082 Cycas revoluta Species Cycadaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO19205 Buxus sempervirens Species Buxaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20523 Bacillus subtilis Species Bacillaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO963 Litsea pungens Species Lauraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8808 Artemisia schimperi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11558 Atylosia trinervia Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO27848 Conoideocrella luteorostrata Species Clavicipitaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9930 Dendrodoris tuberculosa Species Dendrodorididae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12893 Dermolepida albohirtum Species Scarabaeidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4240 Elephantopus tomentosus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8777 Euryops algoensis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4544 Gomortega keule Species Gomortegaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11949 Iris ensata Species Iridaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6259 Keiferia lycopersicella Species Gelechiidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO658 Leucopaxillus gentianeus Species Tricholomataceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12317 Naja kaouthia Species Elapidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12677 Penicillium kapuscinskii Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13002 Petasites georgicus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO1038 Phoenix loureiroi Species Arecaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7050 Picea mariana Species Pinaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5723 Quercus robur Species Fagaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11709 Salvia parryi Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12081 Streptomyces xanthochromogenes Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO10613 Thalictrum longistylum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO19984 Turpinia ternata Species Staphyleaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8492 Viburnum urceolatum Species Adoxaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7347 Viguiera oblongifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28092 Xyris pterygoblephara Species Xyridaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4293 Allium neapolitanum Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO2968 Anthopleura xanthogrammica Species Actiniidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO17226 Burkholderia pyrrocinia Species Burkholderiaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO19333 Byssothecium obiones Species Massarinaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4816 Cycas armstrongii Species Cycadaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25775 Dasystenella acanthina Species Primnoidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO1897 Ephedra aphylla Species Ephedraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO115 Eutreptia viridis Species n.a. Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO3124 Gloiopeltis furcata Species Endocladiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6302 Licaria armeniaca Species Lauraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6130 Mammillaria magnimamma Species Cactaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7622 Monanchora pulchra Species Crambeidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO3756 Munronia delavayi Species Meliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO2609 Neonectria candida Species Nectriaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO18463 Plectocephalus chilensis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO3419 Quercus suber Species Fagaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO291 Suillus bovinus Species Suillaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10870 Trichilia hirta Species Meliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6850 Typha domingensis Species Typhaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO21679 Nuphar lutea Species Nymphaeaceae Eukaryota n.a. n.a. Database[FooDB]
NPO5082 Cycas revoluta Species Cycadaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO3124 Gloiopeltis furcata Species Endocladiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4240 Elephantopus tomentosus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19205 Buxus sempervirens Species Buxaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO963 Litsea pungens Species Lauraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5723 Quercus robur Species Fagaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3124 Gloiopeltis furcata Species Endocladiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5723 Quercus robur Species Fagaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5082 Cycas revoluta Species Cycadaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4240 Elephantopus tomentosus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO963 Litsea pungens Species Lauraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19205 Buxus sempervirens Species Buxaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19984 Turpinia ternata Species Staphyleaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO10613 Thalictrum longistylum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21679 Nuphar lutea Species Nymphaeaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5082 Cycas revoluta Species Cycadaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO19205 Buxus sempervirens Species Buxaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO963 Litsea pungens Species Lauraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO3124 Gloiopeltis furcata Species Endocladiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO6850 Typha domingensis Species Typhaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4293 Allium neapolitanum Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6302 Licaria armeniaca Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21679 Nuphar lutea Species Nymphaeaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO963 Litsea pungens Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8492 Viburnum urceolatum Species Adoxaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1897 Ephedra aphylla Species Ephedraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27848 Conoideocrella luteorostrata Species Clavicipitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1038 Phoenix loureiroi Species Arecaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9930 Dendrodoris tuberculosa Species Dendrodorididae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19333 Byssothecium obiones Species Massarinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12677 Penicillium kapuscinskii Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17226 Burkholderia pyrrocinia Species Burkholderiaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO3756 Munronia delavayi Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2609 Neonectria candida Species Nectriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6259 Keiferia lycopersicella Species Gelechiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12081 Streptomyces xanthochromogenes Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO12893 Dermolepida albohirtum Species Scarabaeidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO115 Eutreptia viridis Species n.a. Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4544 Gomortega keule Species Gomortegaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO658 Leucopaxillus gentianeus Species Tricholomataceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6130 Mammillaria magnimamma Species Cactaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19205 Buxus sempervirens Species Buxaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4240 Elephantopus tomentosus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4816 Cycas armstrongii Species Cycadaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11709 Salvia parryi Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3124 Gloiopeltis furcata Species Endocladiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28092 Xyris pterygoblephara Species Xyridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18463 Plectocephalus chilensis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8777 Euryops algoensis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5723 Quercus robur Species Fagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11949 Iris ensata Species Iridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO291 Suillus bovinus Species Suillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7050 Picea mariana Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10870 Trichilia hirta Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13002 Petasites georgicus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7347 Viguiera oblongifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25775 Dasystenella acanthina Species Primnoidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11558 Atylosia trinervia Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20523 Bacillus subtilis Species Bacillaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO5082 Cycas revoluta Species Cycadaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12317 Naja kaouthia Species Elapidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19984 Turpinia ternata Species Staphyleaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10613 Thalictrum longistylum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8808 Artemisia schimperi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3419 Quercus suber Species Fagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7622 Monanchora pulchra Species Crambeidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2968 Anthopleura xanthogrammica Species Actiniidae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT233 Individual protein Carbonic anhydrase II Homo sapiens Ki = 6863.3 nM PMID[26498393]
NPT1062 Individual protein Carbonic anhydrase IV Homo sapiens Ki = 62.2 nM PMID[26498393]
NPT955 Individual protein Carbonic anhydrase VII Homo sapiens Ki = 26.6 nM PMID[26498393]
NPT949 Individual protein Carbonic anhydrase XII Homo sapiens Ki = 399.7 nM PMID[26498393]
NPT947 Individual protein Carbonic anhydrase I Homo sapiens Ki > 10000.0 nM PMID[26498393]

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT165 Cell line HeLa Homo sapiens IC50 < 3000.0 nM PMID[26722868]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 600.0 nM PMID[26722868]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 2100.0 nM PMID[26722868]
NPT2 Others Unspecified n.a. Ratio IC50 = 3.5 n.a. PMID[26722868]

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC92815 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC478277
1.0 High Similarity NPC478276
1.0 High Similarity NPC478275
0.7292 Intermediate Similarity NPC101399
0.7292 Intermediate Similarity NPC217822
0.7292 Intermediate Similarity NPC11847
0.7292 Intermediate Similarity NPC198938
0.7245 Intermediate Similarity NPC218161
0.6932 Remote Similarity NPC104677
0.6832 Remote Similarity NPC96605
0.6832 Remote Similarity NPC280642
0.6771 Remote Similarity NPC473862
0.6768 Remote Similarity NPC221288
0.6768 Remote Similarity NPC194836
0.6768 Remote Similarity NPC91493
0.6768 Remote Similarity NPC605081
0.67 Remote Similarity NPC85751
0.67 Remote Similarity NPC19240
0.65 Remote Similarity NPC104883
0.65 Remote Similarity NPC488679
0.6436 Remote Similarity NPC205824
0.633 Remote Similarity NPC474093
0.633 Remote Similarity NPC104910
0.625 Remote Similarity NPC483767
0.625 Remote Similarity NPC223426
0.625 Remote Similarity NPC483769
0.625 Remote Similarity NPC483768
0.625 Remote Similarity NPC483766
0.619 Remote Similarity NPC214621
0.619 Remote Similarity NPC34267
0.6068 Remote Similarity NPC231787
0.6038 Remote Similarity NPC483765
0.5963 Remote Similarity NPC217520
0.5938 Remote Similarity NPC48093
0.5932 Remote Similarity NPC275977
0.5929 Remote Similarity NPC162394
0.5872 Remote Similarity NPC477895
0.5818 Remote Similarity NPC470712
0.5789 Remote Similarity NPC156785
0.5789 Remote Similarity NPC474522
0.5741 Remote Similarity NPC81042
0.5702 Remote Similarity NPC30011
0.5702 Remote Similarity NPC72554
0.5678 Remote Similarity NPC25946
0.567 Remote Similarity NPC216496
0.5575 Remote Similarity NPC470718
0.5556 Remote Similarity NPC260504
0.5556 Remote Similarity NPC85707
0.5556 Remote Similarity NPC259957
0.5556 Remote Similarity NPC36138
0.5556 Remote Similarity NPC241781
0.5556 Remote Similarity NPC89809
0.5556 Remote Similarity NPC224530
0.5524 Remote Similarity NPC470125
0.552 Remote Similarity NPC97817
0.5439 Remote Similarity NPC139571
0.5433 Remote Similarity NPC475179
0.541 Remote Similarity NPC473554
0.5403 Remote Similarity NPC487502
0.5385 Remote Similarity NPC33083
0.536 Remote Similarity NPC249560
0.53 Remote Similarity NPC159579
0.53 Remote Similarity NPC129217
0.5246 Remote Similarity NPC21359
0.5246 Remote Similarity NPC460984
0.5196 Remote Similarity NPC321478
0.5185 Remote Similarity NPC297503
0.5182 Remote Similarity NPC477629
0.5169 Remote Similarity NPC470713
0.514 Remote Similarity NPC129264
0.513 Remote Similarity NPC164704
0.5098 Remote Similarity NPC117478
0.5088 Remote Similarity NPC470416
0.5046 Remote Similarity NPC477628
0.5045 Remote Similarity NPC188815

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC92815 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
NPD

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data