Natural Product: NPC160506

Natural Product IDNPC160506
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
Bevirimat
IUPAC Name (1R,3aS,5aR,5bR,7aR,9S,11aR,11bR,13aR,13bR)-9-(3-carboxy-3-methylbutanoyl)oxy-5a,5b,8,8,11a-pentamethyl-1-prop-1-en-2-yl-1,2,3,4,5,6,7,7a,9,10,11,11b,12,13,13a,13b-hexadecahydrocyclopenta[a]chrysene-3a-carboxylic acid
Synonyms Bevirimat; PA-457
Synthetic Gene Cluster n.a.
ChEMBL Identifier CHEMBL404519
PubChem CID 457928
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001553] Triterpenoids

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey YJEJKUQEXFSVCJ-WRFMNRASSA-N
Standard InCHI InChI=1S/C36H56O6/c1-21(2)22-12-17-36(30(40)41)19-18-34(8)23(28(22)36)10-11-25-33(7)15-14-26(42-27(37)20-31(3,4)29(38)39)32(5,6)24(33)13-16-35(25,34)9/h22-26,28H,1,10-20H2,2-9H3,(H,38,39)(H,40,41)/t22-,23+,24-,25+,26-,28+,33-,34+,35+,36-/m0/s1
SMILES O=C(CC(C(=O)O)(C)C)O[C@H]1CC[C@]2([C@H](C1(C)C)CC[C@@]1([C@@H]2CC[C@H]2[C@@]1(C)CC[C@@]1([C@@H]2[C@@H](CC1)C(=C)C)C(=O)O)C)C

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   584.41 Volume:   630.625
?
Van der Waals volume.
Dense:   0.927 LogP:   5.128
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   3.615
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -4.901
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   7.0 Rigid Bonds:   29.0
TPSA:   100.9
?
Topological Polar Surface Area.
H-Bond Acceptor:   6.0
H-Bond Donor:   2.0 Rings:   5.0
Heavy Atoms:   6.0

MedChem Properties

QED Drug-Likeness Score:   0.241 GASA:   1.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   4.932 Fsp3:   0.861
MCE-18:   112.955
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Accepted
Pfizer Rule:   Rejected GSK Rule:   Accepted
Golden Triangle Rule:   Accepted BMS Rule:   0
Chelating Alert:   0 PAINS Alert:   0
Colloidal aggregators:   0.984 Fluc inhibitor:   0.0
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.002
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.0
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.387 Promiscuous compounds:   0.308

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -5.253 MDCK Permeability:   -5.017
Pgp-inhibitor:   0.0 Pgp-substrate:   0.0
PAMPA:   0.946
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.001
20% Bioavailability (F20%):   0.703 30% Bioavailability (F30%):   0.957
50% Bioavailability (F50%):   1.0

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.012 MRP1:   0.98
Plasma Protein Binding (PPB):   98.299% Volume Distribution (VD):   -0.25
Fu: 1.551%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   1.0
OATP1B3 inhibitor:   0.993 BCRP inhibitor:   0.001
BSEP inhibitor:   0.051

ADMET: Metabolism

CYP1A2-inhibitor:   0.0 CYP1A2-substrate:   0.0
CYP2C19-inhibitor:   0.2 CYP2C19-substrate:   0.0
CYP2C9-inhibitor:   0.008 CYP2C9-substrate:   0.0
CYP2D6-inhibitor:   0.0 CYP2D6-substrate:   0.0
CYP3A4-inhibitor:   0.922 CYP3A4-substrate:   0.0
CYP2B6-substrate:   0.0 CYP2C8-inhibitor:   0.0
HLM stability:   0.0
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  1.127 Half-life (T1/2):  1.515

ADMET: Toxicity

hERG Blockers:  0.016 hERG Blockers (10um):  0.012
Human Hepatotoxicity (H-HT):  0.742 Drug-induced Liver Injury (DILI):  0.759
AMES Toxicity:  0.111 Rat Oral Acute Toxicity:  0.155
Maximum Recommended Daily Dose:  0.397 Skin Sensitization:  0.961
Carcinogencity:  0.848 Eye Corrosion:  0.195
Eye Irritation:  0.733 Respiratory Toxicity:  0.85
Drug-induced Neurotoxicity:  0.015 Ototoxicity:  0.693
Hematotoxicity:  0.537 Drug-induced Nephrotoxicity:  0.93
Genotoxicity:  0.731 RPMI-8226 Immunitoxicity:  0.013
A549 Cytotoxicity:  0.004 Hek293 Cytotoxicity:  0.025
BCF:   0.555
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   3.748
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   5.329
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   4.589
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO28686 Syzygium claviflorum Species Myrtaceae Eukaryota n.a. leaf n.a. PMID[8176401]
NPO28686 Syzygium claviflorum Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28686 Syzygium claviflorum Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT20556 Single protein Replicase polyprotein 1ab Severe acute respiratory syndrome coronavirus 2 Inhibition = 10.87 % DOI[10.6019/CHEMBL4495564]
NPT692 Individual protein Histone deacetylase 6 Homo sapiens Inhibition = 26.33 % HDAC6 screening dataset using tau-based substrate in an enzymatic assay yields selective inhibitors and activators
NPT692 Individual protein Histone deacetylase 6 Homo sapiens Inhibition = -1.46 % HDAC6 screening dataset using tau-based substrate in an enzymatic assay yields selective inhibitors and activators
NPT609 Individual protein Human immunodeficiency virus type 1 protease Human immunodeficiency virus 1 IC50 > 171000.0 nM PMID[8676334]
NPT26022 Single protein Gag-Pol polyprotein Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)(HIV-1) Ratio EC50 = 97.0 n.a. PMID[29631960]
NPT26022 Single protein Gag-Pol polyprotein Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)(HIV-1) EC50 = 970.0 nM PMID[29631960]
NPT26022 Single protein Gag-Pol polyprotein Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)(HIV-1) EC50 = 10.0 nM PMID[29631960]
NPT26022 Single protein Gag-Pol polyprotein Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)(HIV-1) IC50 = 552.0 nM PMID[29631960]
NPT26022 Single protein Gag-Pol polyprotein Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)(HIV-1) EC50 = 1120.0 nM PMID[29631960]
NPT26022 Single protein Gag-Pol polyprotein Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)(HIV-1) Ratio EC50 = 112.0 n.a. PMID[29631960]
NPT26022 Single protein Gag-Pol polyprotein Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)(HIV-1) EC50 = 10.4 nM PMID[29631960]
NPT26022 Single protein Gag-Pol polyprotein Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)(HIV-1) EC50 = 74.0 nM PMID[29631960]
NPT604 Individual protein Serum albumin Homo sapiens PPB > 99.0 % PMID[33201699]

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT759 Cell line H9 Homo sapiens IC50 = 7000.0 nM PMID[15501054]
NPT759 Cell line H9 Homo sapiens EC50 < 3500.0 nM PMID[8676334]
NPT759 Cell line H9 Homo sapiens IC50 > 7000.0 nM PMID[15501054]
NPT759 Cell line H9 Homo sapiens EC50 < 0.35 nM PMID[20187635]
NPT25 Cell line MT4 Homo sapiens EC50 = 430.0 nM PMID[16942019]
NPT25 Cell line MT4 Homo sapiens IC50 > 5000.0 nM PMID[20673723]
NPT759 Cell line H9 Homo sapiens EC50 = 7.0 nM PMID[16942019]
NPT759 Cell line H9 Homo sapiens IC50 > 42800.0 nM PMID[16942019]
NPT25 Cell line MT4 Homo sapiens EC50 = 96.0 nM PMID[16942019]
NPT460 Cell line MT2 Homo sapiens IC50 > 42780.0 nM PMID[20329730]
NPT80 Cell line Raji Homo sapiens Activity = 60.0 % PMID[19481937]
NPT80 Cell line Raji Homo sapiens Activity > 80.0 % PMID[19481937]
NPT460 Cell line MT2 Homo sapiens IC50 = 42780.0 nM PMID[20329730]
NPT759 Cell line H9 Homo sapiens EC50 = 0.35 nM PMID[20187635]
NPT25 Cell line MT4 Homo sapiens IC50 = 15200.0 nM PMID[21123066]
NPT1970 Cell line THP-1 Homo sapiens IC50 = 54000.0 nM DOI[10.1039/C3MD00282A]
NPT460 Cell line MT2 Homo sapiens CC50 = 40000.0 nM PMID[19388685]
NPT25 Cell line MT4 Homo sapiens CC50 = 14200.0 nM PMID[22978745]
NPT25 Cell line MT4 Homo sapiens CC50 > 10000.0 nM PMID[23379607]
NPT460 Cell line MT2 Homo sapiens CC50 > 10000.0 nM PMID[25927586]
NPT25 Cell line MT4 Homo sapiens CC50 > 17000.0 nM PMID[26598461]
NPT460 Cell line MT2 Homo sapiens CC50 = 16800.0 nM PMID[26968652]
NPT460 Cell line MT2 Homo sapiens CC50 = 17000.0 nM PMID[26988305]
NPT460 Cell line MT2 Homo sapiens CC50 = 16.8 nM PMID[27326328]
NPT25 Cell line MT4 Homo sapiens CC50 = 15900.0 nM PMID[30703659]
NPT25 Cell line MT4 Homo sapiens CC50 > 6840.0 nM PMID[33214842]
NPT25 Cell line MT4 Homo sapiens CC50 > 2000.0 nM PMID[33639343]
NPT460 Cell line MT2 Homo sapiens CC50 = 17000.0 nM PMID[36441509]
NPT1114 Organism Human immunodeficiency virus Human immunodeficiency virus EC50 < 0.35 nM PMID[23399723]
NPT1114 Organism Human immunodeficiency virus Human immunodeficiency virus EC50 > 0.35 nM PMID[23399723]
NPT1114 Organism Human immunodeficiency virus Human immunodeficiency virus EC50 = 10.3 nM PMID[28850227]
NPT20555 Organism SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Inhibition = 15.36 % DOI[10.21203/rs.3.rs-23951/v1]
NPT20555 Organism SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Inhibition = 0.13 % DOI[10.6019/CHEMBL4495565]
NPT20555 Organism SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 IC50 > 20000.0 nM DOI[10.6019/CHEMBL4651402]
NPT20555 Organism SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 IC50 > 19952.62 nM DOI[10.6019/CHEMBL4651402]
NPT28438 Unchecked Unchecked n.a. FC = 97.0 n.a. PMID[36441509]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 > 17100.0 nM PMID[16942019]
NPT633 Organism Leishmania donovani Leishmania donovani IC50 = 7200.0 nM DOI[10.1039/C3MD00282A]
NPT633 Organism Leishmania donovani Leishmania donovani GI = 59.0 % DOI[10.1039/C3MD00282A]
NPT633 Organism Leishmania donovani Leishmania donovani GI = 69.1 % DOI[10.1039/C3MD00282A]
NPT633 Organism Leishmania donovani Leishmania donovani GI = 100.4 % DOI[10.1039/C3MD00282A]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 = 65.0 nM PMID[27676157]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 = 7710.0 nM PMID[27676157]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. Activity = 98.0 % PMID[27676157]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. CC50 > 4500.0 nM PMID[27676157]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 IC100 = 34.0 uM PMID[8676334]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 < 0.35 nM PMID[26968652]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 1.3 nM PMID[20329730]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 IC50 = 7000.0 nM PMID[20187635]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 11.0 nM PMID[19388685]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Inhibition = 90.0 % PMID[17638699]
NPT621 Tissue Plasma Homo sapiens Stability = 95.0 day PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = -0.14 /ml PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = -0.47 /ml PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = -0.46 /ml PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = 0.0031 /hr PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = 0.0012 /hr PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = 0.0016 /hr PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = 0.14 /hr PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = 0.028 /hr PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = 0.0349 /hr PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = 0.013 /hr PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = 0.017 /hr PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = 0.007 /hr PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = 0.008 /hr PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = 0.071 /hr PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = 0.024 /hr PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = 137.8 n.a. PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = 126.0 n.a. PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = 80.2 n.a. PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 0.00119 ug.mL-1 PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 0.00035 ug.mL-1 PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 0.00055 ug.mL-1 PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = 5.13 /ml PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = 4.59 /ml PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = 4.46 /ml PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = 1340.0 ml/hr PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = 1856.6 ml/hr PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = 320.7 ml/hr PMID[17638699]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 IC50 = 130.0 nM PMID[19526990]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 96.0 nM PMID[20673723]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC > 100.0 n.a. PMID[20308382]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 36.0 n.a. PMID[20308382]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 11.0 n.a. PMID[20308382]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 5.2 n.a. PMID[20308382]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 4.7 n.a. PMID[20308382]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 4.6 n.a. PMID[20308382]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 2.2 n.a. PMID[20308382]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 2.1 n.a. PMID[20308382]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 1.8 n.a. PMID[20308382]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 1.3 n.a. PMID[20308382]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 1.2 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 1.0 n.a. PMID[20308382]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 0.9 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 34.0 nM PMID[20308382]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 0.7 n.a. PMID[20308382]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 52.2 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC > 151.4 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 0.6 n.a. PMID[20308382]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 0.4 n.a. PMID[20308382]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 82.0 nM PMID[21123066]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 IC50 = 10.0 nM PMID[25927586]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 1.7 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 1.5 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 1.9 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 2.3 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 4.5 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 5.6 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 9.3 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 9.8 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC > 76.1 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC > 83.2 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC > 106.1 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC > 106.4 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC > 113.7 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC > 116.6 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC > 119.5 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC > 125.4 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 1.1 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 37.6 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC > 77.5 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 65.5 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 45.8 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 25.3 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC > 113.0 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 10.9 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC = 52.0 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC > 115.1 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC > 111.0 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC > 122.5 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC > 130.6 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC > 157.2 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC > 144.3 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 FC > 132.3 n.a. PMID[19223634]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 9.0 nM PMID[19805571]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 290.0 nM PMID[19805571]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 > 1000.0 nM PMID[19805571]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Ratio EC50 = 32.0 n.a. PMID[19805571]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Ratio EC50 > 111.0 n.a. PMID[19805571]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 0.5 nM PMID[20660667]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 0.05 nM PMID[20660667]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 0.005 nM PMID[20660667]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 < 10.0 nM PMID[26988305]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 76.0 nM PMID[22818973]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 > 4000.0 nM PMID[22818973]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 IC50 = 87.0 nM PMID[22978745]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 0.35 nM PMID[26968652]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 0.2999 nM DOI[10.1007/s00044-010-9467-2]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 IC50 > 6800.0 nM PMID[23379607]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 IC50 > 5000.0 nM PMID[23379607]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 IC50 = 76.0 nM PMID[23379607]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 IC50 = 40.0 nM PMID[23399723]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Inhibition > 50.0 % PMID[25927586]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 75.0 nM PMID[26598461]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 10.0 nM PMID[26988305]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 974.0 nM PMID[26988305]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Ratio EC50 = 97.4 n.a. PMID[26968652]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 553.0 nM PMID[26988305]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 > 10000.0 nM PMID[26988305]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 1810.0 nM PMID[26988305]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 40.0 nM PMID[26988305]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 77.0 nM PMID[26988305]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Activity = 0.72 log10/ml PMID[27326328]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Ratio IC50 = 118.62 n.a. PMID[27676157]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Ratio = 52.0 n.a. PMID[28454672]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 26.0 nM PMID[30703659]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 552.0 nM PMID[33508465]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 IC50 = 64.57 nM PMID[33639343]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 IC50 = 65.0 nM PMID[33639343]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 IC50 = 65.0 nM PMID[38107170]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 > 10000.0 nM PMID[36441509]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 10.0 nM PMID[36441509]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 552.0 nM PMID[36441509]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 970.0 nM PMID[36441509]
NPT2 Others Unspecified n.a. EC50 > 17100.0 nM PMID[16942019]
NPT2 Others Unspecified n.a. Activity = 6.1 % PMID[24411124]
NPT2 Others Unspecified n.a. Activity = 36.1 % PMID[24411124]
NPT2 Others Unspecified n.a. Activity = 74.2 % PMID[24411124]
NPT2 Others Unspecified n.a. Activity = 96.5 % PMID[24411124]
NPT2 Others Unspecified n.a. IC50 = 396.0 molar ratio PMID[24411124]
NPT2 Others Unspecified n.a. IC50 = 9200.0 nM PMID[21856154]
NPT2 Others Unspecified n.a. IC50 = 26290.0 nM PMID[21856154]
NPT2 Others Unspecified n.a. Ratio CC50/IC50 = 775.0 n.a. PMID[23399723]
NPT2 Others Unspecified n.a. Ratio IC50 = 7.5 n.a. DOI[10.1039/C3MD00282A]
NPT2 Others Unspecified n.a. Ratio CC50/IC50 > 1000.0 n.a. PMID[25927586]
NPT2 Others Unspecified n.a. Ratio = 1.6 n.a. PMID[26968652]
NPT2 Others Unspecified n.a. EC50 = 552.0 nM PMID[27326328]
NPT2 Others Unspecified n.a. EC50 = 1291.0 nM PMID[27326328]
NPT2 Others Unspecified n.a. EC50 = 10.0 nM PMID[27326328]
NPT2 Others Unspecified n.a. EC50 > 10000.0 nM PMID[27326328]
NPT2 Others Unspecified n.a. EC50 = 74.0 nM PMID[27326328]
NPT2 Others Unspecified n.a. EC50 = 7.0 nM PMID[27326328]
NPT2 Others Unspecified n.a. EC50 = 1810.0 nM PMID[27326328]
NPT2 Others Unspecified n.a. EC50 = 1114.0 nM PMID[27326328]
NPT2 Others Unspecified n.a. EC50 = 40.0 nM PMID[27326328]
NPT2 Others Unspecified n.a. EC50 = 77.0 nM PMID[27326328]

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT605 Organism Homo sapiens Homo sapiens Activity = 16.7 % PMID[17576843]
NPT605 Organism Homo sapiens Homo sapiens Activity = 50.0 % PMID[17576843]
NPT605 Organism Homo sapiens Homo sapiens Activity = 33.3 % PMID[17576843]
NPT605 Organism Homo sapiens Homo sapiens Tlag = 0.18 hr PMID[17638699]
NPT605 Organism Homo sapiens Homo sapiens Activity = 104.0 n.a. PMID[17638699]
NPT605 Organism Homo sapiens Homo sapiens Activity = 121.0 n.a. PMID[17638699]
NPT605 Organism Homo sapiens Homo sapiens Activity = -15.0 n.a. PMID[17638699]
NPT605 Organism Homo sapiens Homo sapiens Tlag = 0.2 hr PMID[17638699]
NPT605 Organism Homo sapiens Homo sapiens Tlag = 0.15 hr PMID[17638699]
NPT605 Organism Homo sapiens Homo sapiens CLd = 0.48 L/hr PMID[17638699]
NPT605 Organism Homo sapiens Homo sapiens CLd = 0.45 L/hr PMID[17638699]





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC160506 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
0.8983 High Similarity NPC4309
0.7077 Intermediate Similarity NPC271974
0.7077 Intermediate Similarity NPC247312
0.6709 Remote Similarity NPC248287
0.6709 Remote Similarity NPC234548
0.6667 Remote Similarity NPC478841
0.6667 Remote Similarity NPC488166
0.6543 Remote Similarity NPC8102
0.6543 Remote Similarity NPC66894
0.6418 Remote Similarity NPC31031
0.6406 Remote Similarity NPC68828
0.6364 Remote Similarity NPC192744
0.6324 Remote Similarity NPC201655
0.6269 Remote Similarity NPC264317
0.6269 Remote Similarity NPC294438
0.6163 Remote Similarity NPC205392
0.6163 Remote Similarity NPC105942
0.5942 Remote Similarity NPC488164
0.5942 Remote Similarity NPC264005
0.5909 Remote Similarity NPC246445
0.5714 Remote Similarity NPC488506
0.5714 Remote Similarity NPC220498
0.5676 Remote Similarity NPC600907
0.5652 Remote Similarity NPC119743
0.5647 Remote Similarity NPC475138
0.5616 Remote Similarity NPC486704
0.5556 Remote Similarity NPC16377
0.5517 Remote Similarity NPC51947
0.5493 Remote Similarity NPC24772
0.5493 Remote Similarity NPC213832
0.5479 Remote Similarity NPC601275
0.5455 Remote Similarity NPC101863
0.5441 Remote Similarity NPC305835
0.5405 Remote Similarity NPC488165
0.5352 Remote Similarity NPC80590
0.5342 Remote Similarity NPC151191
0.5333 Remote Similarity NPC608379
0.5319 Remote Similarity NPC204392
0.5278 Remote Similarity NPC211162
0.5278 Remote Similarity NPC183374
0.527 Remote Similarity NPC475061
0.5244 Remote Similarity NPC486709
0.5238 Remote Similarity NPC88744
0.5211 Remote Similarity NPC98270
0.5205 Remote Similarity NPC195395
0.52 Remote Similarity NPC474728
0.5155 Remote Similarity NPC275668
0.5139 Remote Similarity NPC5280
0.5139 Remote Similarity NPC611062
0.5072 Remote Similarity NPC475509
0.5068 Remote Similarity NPC291373
0.5068 Remote Similarity NPC261616
0.5067 Remote Similarity NPC474719
0.5059 Remote Similarity NPC486699
0.5053 Remote Similarity NPC240734

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC160506 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
1.0 High Similarity NPD8035 Phase 2
0.75 Intermediate Similarity NPD8034 Phase 2
0.6269 Remote Similarity NPD7520 Phase 1

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data