Structure

Physi-Chem Properties

Molecular Weight:  478.07
Volume:  428.091
LogP:  0.447
LogD:  0.673
LogS:  -4.075
# Rotatable Bonds:  4
TPSA:  227.58
# H-Bond Aceptor:  13
# H-Bond Donor:  8
# Rings:  4
# Heavy Atoms:  13

MedChem Properties

QED Drug-Likeness Score:  0.223
Synthetic Accessibility Score:  4.073
Fsp3:  0.238
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  1
PAINS Alert:  1

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -6.486
MDCK Permeability:  1.2210496606712695e-05
Pgp-inhibitor:  0.0
Pgp-substrate:  0.205
Human Intestinal Absorption (HIA):  0.667
20% Bioavailability (F20%):  0.687
30% Bioavailability (F30%):  0.999

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.023
Plasma Protein Binding (PPB):  87.0230941772461%
Volume Distribution (VD):  0.723
Pgp-substrate:  14.119953155517578%

ADMET: Metabolism

CYP1A2-inhibitor:  0.049
CYP1A2-substrate:  0.022
CYP2C19-inhibitor:  0.022
CYP2C19-substrate:  0.037
CYP2C9-inhibitor:  0.018
CYP2C9-substrate:  0.257
CYP2D6-inhibitor:  0.019
CYP2D6-substrate:  0.13
CYP3A4-inhibitor:  0.035
CYP3A4-substrate:  0.002

ADMET: Excretion

Clearance (CL):  1.889
Half-life (T1/2):  0.927

ADMET: Toxicity

hERG Blockers:  0.008
Human Hepatotoxicity (H-HT):  0.17
Drug-inuced Liver Injury (DILI):  0.988
AMES Toxicity:  0.433
Rat Oral Acute Toxicity:  0.074
Maximum Recommended Daily Dose:  0.005
Skin Sensitization:  0.064
Carcinogencity:  0.042
Eye Corrosion:  0.003
Eye Irritation:  0.025
Respiratory Toxicity:  0.024

Download Data

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Similar NPs/Drugs  

  Natural Product: NPC155763

Natural Product ID:  NPC155763
Common Name*:   6-[2-(3,4-Dihydroxyphenyl)-5,7-Dihydroxy-4-Oxochromen-3-Yl]Oxy-3,4,5-Trihydroxyoxane-2-Carboxylic Acid
IUPAC Name:   6-[2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4-oxochromen-3-yl]oxy-3,4,5-trihydroxyoxane-2-carboxylic acid
Synonyms:  
Standard InCHIKey:  DUBCCGAQYVUYEU-UHFFFAOYSA-N
Standard InCHI:  InChI=1S/C21H18O13/c22-7-4-10(25)12-11(5-7)32-17(6-1-2-8(23)9(24)3-6)18(13(12)26)33-21-16(29)14(27)15(28)19(34-21)20(30)31/h1-5,14-16,19,21-25,27-29H,(H,30,31)
SMILES:  Oc1cc(O)c2c(c1)oc(c(c2=O)OC1OC(C(=O)O)C(C(C1O)O)O)c1ccc(c(c1)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL1506682
PubChem CID:   12004528
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0000334] Flavonoids
        • [CHEMONTID:0001111] Flavonoid glycosides
          • [CHEMONTID:0001583] Flavonoid O-glycosides
            • [CHEMONTID:0002934] Flavonoid O-glucuronides
              • [CHEMONTID:0003532] Flavonoid-3-O-glucuronides

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. DOI[10.1007/s11816-015-0350-y]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. leaf n.a. DOI[10.1016/S0031-9422(00)94055-X]
NPO3057 Polygonum aviculare Species Polygonaceae Eukaryota n.a. whole plant n.a. DOI[10.1016/S1572-557X(05)02007-6]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota n.a. n.a. n.a. DOI[10.1078/0176-1617-00195]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. flower n.a. DOI[10.3390/70200245]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota n.a. n.a. n.a. PMID[10757735]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. seed n.a. PMID[11540412]
NPO21963 Hypericum japonicum Species Hypericaceae Eukaryota n.a. n.a. n.a. PMID[11914965]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota n.a. n.a. n.a. PMID[14735439]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota n.a. callus n.a. PMID[15715262]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. aerial part n.a. PMID[17520525]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota n.a. n.a. n.a. PMID[18220354]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota n.a. n.a. n.a. PMID[19919095]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[22966846]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota flower buds and leaves Khon Kaen province, Thailand 2010 PMID[23270663]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota Leaves n.a. n.a. PMID[23642481]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[24617303]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota Flowers n.a. n.a. PMID[26462418]
NPO21963 Hypericum japonicum Species Hypericaceae Eukaryota n.a. n.a. n.a. PMID[27116034]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota n.a. n.a. n.a. PMID[28445039]
NPO21963 Hypericum japonicum Species Hypericaceae Eukaryota n.a. n.a. n.a. PMID[29667821]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota Roots n.a. n.a. PMID[30024167]
NPO3057 Polygonum aviculare Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[Article]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. Database[FooDB]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. Database[FooDB]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota Rhizome n.a. n.a. Database[FooDB]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota n.a. n.a. Database[FooDB]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO3057 Polygonum aviculare Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21963 Hypericum japonicum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[MetaboLights]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3057 Polygonum aviculare Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21963 Hypericum japonicum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3057 Polygonum aviculare Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO21963 Hypericum japonicum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO3057 Polygonum aviculare Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21963 Hypericum japonicum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT483 Individual Protein Prelamin-A/C Homo sapiens Potency = 12589.3 nM PMID[516706]
NPT48 Individual Protein Lysine-specific demethylase 4D-like Homo sapiens Potency = 4466.8 nM PMID[516706]
NPT51 Individual Protein Microtubule-associated protein tau Homo sapiens Potency = 11220.2 nM PMID[516706]
NPT55 Individual Protein Putative fructose-1,6-bisphosphate aldolase Giardia intestinalis Potency = 15811.4 nM PMID[516706]
NPT4744 Individual Protein M17 leucyl aminopeptidase Plasmodium falciparum 3D7 IC50 = 48150.0 nM PMID[516706]
NPT60 Individual Protein Lysosomal alpha-glucosidase Homo sapiens Potency = 3981.1 nM PMID[516706]
NPT59 Individual Protein DNA polymerase beta Homo sapiens Potency = 8912.5 nM PMID[516706]
NPT532 Individual Protein Lysine-specific demethylase 4A Homo sapiens Potency n.a. 31622.8 nM PMID[516706]
NPT62 Individual Protein 6-phospho-1-fructokinase Trypanosoma brucei Potency n.a. 37933.0 nM PMID[516706]
NPT4 Individual Protein Large T antigen Simian virus 40 IC50 n.a. 9800.0 nM PMID[516706]
NPT5 Individual Protein Histone-lysine N-methyltransferase, H3 lysine-9 specific 3 Homo sapiens Potency n.a. 31622.8 nM PMID[516706]
NPT63 Individual Protein Bromodomain adjacent to zinc finger domain protein 2B Homo sapiens Potency n.a. 35481.3 nM PMID[516706]
NPT135 Individual Protein Chromobox protein homolog 1 Homo sapiens Potency n.a. 39810.7 nM PMID[516706]
NPT199 Individual Protein DNA polymerase kappa Homo sapiens Potency n.a. 14125.4 nM PMID[516706]
NPT2966 Individual Protein T-complex protein 1 subunit beta Macaaca fascicularis Potency n.a. 11220.2 nM PMID[516706]
NPT534 Individual Protein Phosphoglycerate kinase, glycosomal Trypanosoma brucei brucei Potency n.a. 25118.9 nM PMID[516706]
NPT100 Individual Protein Glutaminase kidney isoform, mitochondrial Homo sapiens Potency n.a. 35481.3 nM PMID[516706]
NPT11 Individual Protein Guanine nucleotide-binding protein G(s), subunit alpha Homo sapiens Potency n.a. 11220.2 nM PMID[516706]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency n.a. 12995.3 nM PMID[516706]
NPT1854 Individual Protein Phosphoglycerate kinase Trypanosoma brucei brucei (strain 927/4 GUTat10.1) Potency n.a. 10311.9 nM PMID[516706]
NPT535 Individual Protein Parathyroid hormone receptor Homo sapiens Potency n.a. 158489.3 nM PMID[516706]
NPT105 Individual Protein Muscleblind-like protein 1 Homo sapiens Potency n.a. 19952.6 nM PMID[516706]
NPT49 Individual Protein DNA-(apurinic or apyrimidinic site) lyase Homo sapiens Potency n.a. 7079.5 nM PMID[516706]
NPT1040 Individual Protein Human immunodeficiency virus type 1 Tat protein Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)(HIV-1) IC50 n.a. 2124.0 nM PMID[516706]
NPT2 Others Unspecified IC50 = 8720.0 nM PMID[516706]
NPT94 Individual Protein Aldehyde dehydrogenase 1A1 Homo sapiens Potency = 39810.7 nM PMID[516706]
NPT798 Individual Protein Alkaline phosphatase placental-like Homo sapiens EC50 > 100000.0 nM PMID[516706]
NPT799 Individual Protein Intestinal alkaline phosphatase Mus musculus IC50 = 3290.0 nM PMID[516706]
NPT801 Individual Protein Intestinal alkaline phosphatase Homo sapiens IC50 = 3150.0 nM PMID[516706]
NPT801 Individual Protein Intestinal alkaline phosphatase Homo sapiens IC50 = 891.0 nM PMID[516706]
NPT802 Individual Protein Alkaline phosphatase, tissue-nonspecific isozyme Homo sapiens IC50 > 100000.0 nM PMID[516706]
NPT21702 PROTEIN-PROTEIN INTERACTION Importin subunit beta-1/Snurportin-1 Homo sapiens Potency n.a. 89125.1 nM PMID[516706]
NPT803 Individual Protein Flap endonuclease 1 Homo sapiens Potency n.a. 11220.2 nM PMID[516706]
NPT8 Individual Protein DNA polymerase iota Homo sapiens Potency n.a. 22387.2 nM PMID[516706]
NPT9 Individual Protein DNA polymerase eta Homo sapiens Potency n.a. 6309.6 nM PMID[516706]
NPT2 Others Unspecified Potency n.a. 3162.3 nM PMID[516706]
NPT2 Others Unspecified Potency n.a. 18356.4 nM PMID[516706]
NPT2 Others Unspecified Potency n.a. 501.2 nM PMID[516706]
NPT821 Individual Protein Werner syndrome ATP-dependent helicase Homo sapiens Potency n.a. 44668.4 nM PMID[516706]
NPT755 Individual Protein Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 Homo sapiens Potency n.a. 56234.1 nM PMID[516706]
NPT2 Others Unspecified IC50 n.a. 2700.0 nM PMID[516706]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC155763 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC20505
1.0 High Similarity NPC235260
0.9938 High Similarity NPC190003
0.9938 High Similarity NPC175107
0.9937 High Similarity NPC138927
0.9876 High Similarity NPC4390
0.9875 High Similarity NPC116864
0.9875 High Similarity NPC244776
0.9815 High Similarity NPC101191
0.9815 High Similarity NPC49344
0.9815 High Similarity NPC253685
0.9815 High Similarity NPC135277
0.9815 High Similarity NPC43211
0.9815 High Similarity NPC210094
0.9815 High Similarity NPC237435
0.9815 High Similarity NPC115760
0.9814 High Similarity NPC153755
0.9811 High Similarity NPC88789
0.9811 High Similarity NPC179950
0.9811 High Similarity NPC145038
0.9811 High Similarity NPC56077
0.9811 High Similarity NPC253662
0.9811 High Similarity NPC276222
0.9811 High Similarity NPC274618
0.9811 High Similarity NPC118284
0.9811 High Similarity NPC308404
0.9811 High Similarity NPC281131
0.9755 High Similarity NPC144097
0.9755 High Similarity NPC472385
0.9755 High Similarity NPC61904
0.9755 High Similarity NPC198324
0.975 High Similarity NPC84362
0.975 High Similarity NPC173637
0.975 High Similarity NPC52550
0.975 High Similarity NPC317489
0.975 High Similarity NPC127546
0.975 High Similarity NPC223424
0.9748 High Similarity NPC277205
0.9748 High Similarity NPC19388
0.9748 High Similarity NPC55786
0.9748 High Similarity NPC240431
0.9695 High Similarity NPC253521
0.9695 High Similarity NPC113836
0.9695 High Similarity NPC37668
0.9695 High Similarity NPC35167
0.9693 High Similarity NPC264735
0.9693 High Similarity NPC477848
0.9693 High Similarity NPC34267
0.9693 High Similarity NPC214621
0.9693 High Similarity NPC223426
0.9693 High Similarity NPC81042
0.9689 High Similarity NPC223747
0.9689 High Similarity NPC225434
0.9689 High Similarity NPC219904
0.9689 High Similarity NPC120099
0.9689 High Similarity NPC203050
0.9688 High Similarity NPC21100
0.9688 High Similarity NPC197285
0.9688 High Similarity NPC113968
0.9688 High Similarity NPC135599
0.9688 High Similarity NPC277174
0.9688 High Similarity NPC73855
0.9688 High Similarity NPC328940
0.9634 High Similarity NPC471669
0.9634 High Similarity NPC268533
0.9634 High Similarity NPC296018
0.9634 High Similarity NPC211532
0.9634 High Similarity NPC233994
0.9634 High Similarity NPC154741
0.9634 High Similarity NPC89127
0.9632 High Similarity NPC45522
0.9632 High Similarity NPC42773
0.9632 High Similarity NPC21666
0.9632 High Similarity NPC169977
0.9632 High Similarity NPC24043
0.9632 High Similarity NPC101026
0.963 High Similarity NPC156869
0.963 High Similarity NPC84265
0.963 High Similarity NPC245014
0.963 High Similarity NPC136042
0.963 High Similarity NPC255157
0.963 High Similarity NPC67326
0.963 High Similarity NPC206123
0.963 High Similarity NPC259896
0.963 High Similarity NPC95866
0.963 High Similarity NPC29958
0.963 High Similarity NPC254855
0.963 High Similarity NPC282987
0.9627 High Similarity NPC92565
0.9627 High Similarity NPC265530
0.9627 High Similarity NPC160156
0.9627 High Similarity NPC226304
0.9627 High Similarity NPC325555
0.9623 High Similarity NPC77660
0.9623 High Similarity NPC189142
0.9578 High Similarity NPC222674
0.9576 High Similarity NPC173837
0.9576 High Similarity NPC217387
0.9576 High Similarity NPC196127
0.9576 High Similarity NPC217520
0.9576 High Similarity NPC258044
0.9576 High Similarity NPC139571
0.9576 High Similarity NPC267680
0.9576 High Similarity NPC293626
0.9576 High Similarity NPC476773
0.9571 High Similarity NPC172807
0.9571 High Similarity NPC26230
0.9571 High Similarity NPC176740
0.9571 High Similarity NPC155877
0.9571 High Similarity NPC211594
0.9571 High Similarity NPC471748
0.9571 High Similarity NPC60735
0.9571 High Similarity NPC471725
0.9571 High Similarity NPC134532
0.9571 High Similarity NPC245452
0.9571 High Similarity NPC117260
0.9571 High Similarity NPC203259
0.9571 High Similarity NPC254540
0.9571 High Similarity NPC476405
0.9571 High Similarity NPC33054
0.9568 High Similarity NPC52382
0.9568 High Similarity NPC270578
0.9565 High Similarity NPC67037
0.9565 High Similarity NPC255615
0.9563 High Similarity NPC168822
0.9563 High Similarity NPC19709
0.9563 High Similarity NPC191306
0.9563 High Similarity NPC270335
0.956 High Similarity NPC282169
0.9521 High Similarity NPC107987
0.9521 High Similarity NPC36138
0.9521 High Similarity NPC97119
0.9521 High Similarity NPC470447
0.9521 High Similarity NPC135831
0.9521 High Similarity NPC297503
0.9521 High Similarity NPC470446
0.9521 High Similarity NPC470445
0.9521 High Similarity NPC470449
0.9515 High Similarity NPC472382
0.9515 High Similarity NPC473862
0.9515 High Similarity NPC65563
0.9515 High Similarity NPC470949
0.9515 High Similarity NPC472380
0.9515 High Similarity NPC8573
0.9515 High Similarity NPC472384
0.9509 High Similarity NPC149011
0.9509 High Similarity NPC67105
0.9509 High Similarity NPC204937
0.9509 High Similarity NPC285197
0.9509 High Similarity NPC72249
0.9506 High Similarity NPC58716
0.9506 High Similarity NPC275454
0.9506 High Similarity NPC149244
0.9506 High Similarity NPC48640
0.9506 High Similarity NPC116745
0.9506 High Similarity NPC146792
0.9506 High Similarity NPC45618
0.9503 High Similarity NPC22832
0.9503 High Similarity NPC311830
0.9503 High Similarity NPC34531
0.95 High Similarity NPC473043
0.95 High Similarity NPC27942
0.9464 High Similarity NPC470416
0.9464 High Similarity NPC470451
0.9464 High Similarity NPC470455
0.9458 High Similarity NPC168584
0.9458 High Similarity NPC477895
0.9455 High Similarity NPC294815
0.9455 High Similarity NPC473327
0.9455 High Similarity NPC220173
0.9455 High Similarity NPC16194
0.9455 High Similarity NPC294629
0.9455 High Similarity NPC19108
0.9455 High Similarity NPC476472
0.9448 High Similarity NPC226294
0.9448 High Similarity NPC58053
0.9448 High Similarity NPC476771
0.9448 High Similarity NPC186807
0.9448 High Similarity NPC475942
0.9448 High Similarity NPC105025
0.9448 High Similarity NPC469931
0.9448 High Similarity NPC201292
0.9448 High Similarity NPC227508
0.9448 High Similarity NPC45638
0.9448 High Similarity NPC93337
0.9444 High Similarity NPC210073
0.9444 High Similarity NPC8856
0.9444 High Similarity NPC254306
0.9444 High Similarity NPC115674
0.9441 High Similarity NPC88023
0.9441 High Similarity NPC88043
0.9441 High Similarity NPC29830
0.9441 High Similarity NPC243930
0.9441 High Similarity NPC222936
0.9441 High Similarity NPC284960
0.9441 High Similarity NPC309025
0.9437 High Similarity NPC224530
0.9437 High Similarity NPC159579
0.9437 High Similarity NPC216496
0.9437 High Similarity NPC85707

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC155763 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9815 High Similarity NPD4338 Clinical (unspecified phase)
0.9571 High Similarity NPD6797 Phase 2
0.9512 High Similarity NPD7251 Discontinued
0.9337 High Similarity NPD7808 Phase 3
0.9329 High Similarity NPD7054 Approved
0.9273 High Similarity NPD7472 Approved
0.9268 High Similarity NPD3818 Discontinued
0.9157 High Similarity NPD7074 Phase 3
0.913 High Similarity NPD4381 Clinical (unspecified phase)
0.9006 High Similarity NPD3817 Phase 2
0.8982 High Similarity NPD7804 Clinical (unspecified phase)
0.8916 High Similarity NPD6167 Clinical (unspecified phase)
0.8916 High Similarity NPD6166 Phase 2
0.8916 High Similarity NPD6168 Clinical (unspecified phase)
0.8834 High Similarity NPD4868 Clinical (unspecified phase)
0.8773 High Similarity NPD5402 Approved
0.8765 High Similarity NPD1934 Approved
0.8742 High Similarity NPD1512 Approved
0.872 High Similarity NPD3882 Suspended
0.8712 High Similarity NPD2801 Approved
0.8712 High Similarity NPD2393 Clinical (unspecified phase)
0.8667 High Similarity NPD7075 Discontinued
0.8655 High Similarity NPD7993 Clinical (unspecified phase)
0.8616 High Similarity NPD1511 Approved
0.8571 High Similarity NPD5403 Approved
0.8537 High Similarity NPD6801 Discontinued
0.8528 High Similarity NPD4380 Phase 2
0.8485 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.8447 Intermediate Similarity NPD5401 Approved
0.8391 Intermediate Similarity NPD6559 Discontinued
0.8385 Intermediate Similarity NPD6799 Approved
0.8293 Intermediate Similarity NPD1653 Approved
0.8278 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.8221 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.8161 Intermediate Similarity NPD3751 Discontinued
0.8155 Intermediate Similarity NPD1465 Phase 2
0.814 Intermediate Similarity NPD3787 Discontinued
0.8125 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.8125 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.8084 Intermediate Similarity NPD6599 Discontinued
0.8079 Intermediate Similarity NPD7685 Pre-registration
0.8075 Intermediate Similarity NPD1549 Phase 2
0.8047 Intermediate Similarity NPD7819 Suspended
0.8037 Intermediate Similarity NPD6190 Approved
0.8036 Intermediate Similarity NPD7411 Suspended
0.8035 Intermediate Similarity NPD6232 Discontinued
0.8023 Intermediate Similarity NPD5494 Approved
0.8011 Intermediate Similarity NPD5844 Phase 1
0.8 Intermediate Similarity NPD7473 Discontinued
0.7989 Intermediate Similarity NPD8313 Approved
0.7989 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7989 Intermediate Similarity NPD8312 Approved
0.7955 Intermediate Similarity NPD7228 Approved
0.7904 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7901 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7895 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.7888 Intermediate Similarity NPD1510 Phase 2
0.7874 Intermediate Similarity NPD7199 Phase 2
0.7866 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7861 Intermediate Similarity NPD6234 Discontinued
0.7861 Intermediate Similarity NPD919 Approved
0.7842 Intermediate Similarity NPD7435 Discontinued
0.784 Intermediate Similarity NPD2796 Approved
0.7791 Intermediate Similarity NPD7266 Discontinued
0.7784 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.7778 Intermediate Similarity NPD37 Approved
0.7772 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7771 Intermediate Similarity NPD6959 Discontinued
0.7758 Intermediate Similarity NPD3750 Approved
0.775 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.775 Intermediate Similarity NPD1613 Approved
0.7746 Intermediate Similarity NPD4966 Approved
0.7746 Intermediate Similarity NPD4967 Phase 2
0.7746 Intermediate Similarity NPD4965 Approved
0.7744 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.774 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7702 Intermediate Similarity NPD230 Phase 1
0.7701 Intermediate Similarity NPD3749 Approved
0.7684 Intermediate Similarity NPD6782 Approved
0.7684 Intermediate Similarity NPD6776 Approved
0.7684 Intermediate Similarity NPD6779 Approved
0.7684 Intermediate Similarity NPD6777 Approved
0.7684 Intermediate Similarity NPD6781 Approved
0.7684 Intermediate Similarity NPD6778 Approved
0.7684 Intermediate Similarity NPD6780 Approved
0.767 Intermediate Similarity NPD1247 Approved
0.7641 Intermediate Similarity NPD8151 Discontinued
0.764 Intermediate Similarity NPD943 Approved
0.763 Intermediate Similarity NPD8455 Phase 2
0.7622 Intermediate Similarity NPD1551 Phase 2
0.7619 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7619 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7602 Intermediate Similarity NPD7874 Approved
0.7602 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.7593 Intermediate Similarity NPD1933 Approved
0.7584 Intermediate Similarity NPD3926 Phase 2
0.7545 Intermediate Similarity NPD4628 Phase 3
0.7543 Intermediate Similarity NPD7768 Phase 2
0.7538 Intermediate Similarity NPD7584 Approved
0.7531 Intermediate Similarity NPD1240 Approved
0.7516 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7486 Intermediate Similarity NPD7240 Approved
0.7485 Intermediate Similarity NPD447 Suspended
0.7475 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.7475 Intermediate Similarity NPD7783 Phase 2
0.7474 Intermediate Similarity NPD7697 Approved
0.7474 Intermediate Similarity NPD7698 Approved
0.7474 Intermediate Similarity NPD7696 Phase 3
0.7471 Intermediate Similarity NPD2532 Approved
0.7471 Intermediate Similarity NPD2533 Approved
0.7471 Intermediate Similarity NPD2534 Approved
0.7455 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.7455 Intermediate Similarity NPD3748 Approved
0.7439 Intermediate Similarity NPD1607 Approved
0.7438 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7436 Intermediate Similarity NPD8319 Approved
0.7436 Intermediate Similarity NPD8320 Phase 1
0.7436 Intermediate Similarity NPD7871 Phase 2
0.7436 Intermediate Similarity NPD7870 Phase 2
0.7421 Intermediate Similarity NPD6535 Approved
0.7421 Intermediate Similarity NPD6534 Approved
0.7411 Intermediate Similarity NPD7701 Phase 2
0.741 Intermediate Similarity NPD2935 Discontinued
0.7384 Intermediate Similarity NPD920 Approved
0.7381 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.738 Intermediate Similarity NPD8150 Discontinued
0.738 Intermediate Similarity NPD8434 Phase 2
0.7368 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7368 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7348 Intermediate Similarity NPD7784 Clinical (unspecified phase)
0.7346 Intermediate Similarity NPD3027 Phase 3
0.7337 Intermediate Similarity NPD5953 Discontinued
0.7323 Intermediate Similarity NPD7585 Approved
0.7306 Intermediate Similarity NPD7700 Phase 2
0.7306 Intermediate Similarity NPD7699 Phase 2
0.7301 Intermediate Similarity NPD6798 Discontinued
0.7301 Intermediate Similarity NPD2313 Discontinued
0.73 Intermediate Similarity NPD7801 Approved
0.7299 Intermediate Similarity NPD3226 Approved
0.7273 Intermediate Similarity NPD7583 Approved
0.7256 Intermediate Similarity NPD6233 Phase 2
0.7251 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.7246 Intermediate Similarity NPD7033 Discontinued
0.7245 Intermediate Similarity NPD6823 Phase 2
0.7233 Intermediate Similarity NPD8155 Clinical (unspecified phase)
0.7228 Intermediate Similarity NPD7286 Phase 2
0.7205 Intermediate Similarity NPD1203 Approved
0.72 Intermediate Similarity NPD7458 Discontinued
0.7179 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7178 Intermediate Similarity NPD6832 Phase 2
0.7176 Intermediate Similarity NPD2800 Approved
0.7176 Intermediate Similarity NPD1243 Approved
0.7176 Intermediate Similarity NPD1652 Phase 2
0.717 Intermediate Similarity NPD1091 Approved
0.7169 Intermediate Similarity NPD6355 Discontinued
0.7163 Intermediate Similarity NPD5619 Clinical (unspecified phase)
0.716 Intermediate Similarity NPD2346 Discontinued
0.7143 Intermediate Similarity NPD2799 Discontinued
0.7143 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7125 Intermediate Similarity NPD9269 Phase 2
0.7121 Intermediate Similarity NPD7680 Approved
0.7102 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7095 Intermediate Similarity NPD5353 Approved
0.7079 Intermediate Similarity NPD6844 Discontinued
0.7074 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.7066 Intermediate Similarity NPD1899 Clinical (unspecified phase)
0.7066 Intermediate Similarity NPD5124 Phase 1
0.7066 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.7062 Intermediate Similarity NPD4363 Phase 3
0.7062 Intermediate Similarity NPD4360 Phase 2
0.7049 Intermediate Similarity NPD5710 Approved
0.7049 Intermediate Similarity NPD5711 Approved
0.7037 Intermediate Similarity NPD3225 Approved
0.7035 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7022 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7012 Intermediate Similarity NPD9494 Approved
0.7011 Intermediate Similarity NPD5242 Approved
0.701 Intermediate Similarity NPD6214 Clinical (unspecified phase)
0.701 Intermediate Similarity NPD6213 Phase 3
0.701 Intermediate Similarity NPD6212 Phase 3
0.7006 Intermediate Similarity NPD4060 Phase 1
0.7 Intermediate Similarity NPD6099 Approved
0.7 Intermediate Similarity NPD6100 Approved
0.6988 Remote Similarity NPD3268 Approved
0.6985 Remote Similarity NPD5006 Approved
0.6985 Remote Similarity NPD5005 Approved
0.6977 Remote Similarity NPD6674 Discontinued
0.697 Remote Similarity NPD4908 Phase 1
0.6964 Remote Similarity NPD4340 Discontinued
0.6959 Remote Similarity NPD2344 Approved
0.6957 Remote Similarity NPD1547 Clinical (unspecified phase)
0.6957 Remote Similarity NPD422 Phase 1
0.6951 Remote Similarity NPD2798 Approved
0.6946 Remote Similarity NPD4062 Phase 3
0.6942 Remote Similarity NPD7930 Approved
0.6927 Remote Similarity NPD6386 Approved
0.6927 Remote Similarity NPD6385 Approved
0.6923 Remote Similarity NPD6651 Approved
0.6918 Remote Similarity NPD1548 Phase 1

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data