Natural Product: NPC473459

Natural Product ID:  NPC473459
Common Name:   Gypsogenin 28-O-Alpha-D-Galactopyranosyl-(1->6)-Beta-D-Glucopyranosyl-(1->6)-[Beta-D-Glucopyranosyl-(1->3)]-Beta-D-Glucopyranosyl Ester
IUPAC Name:   [(2R,3S,4R,5S,6S)-3,5-dihydroxy-4-[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-6-[[(2S,3S,4R,5R,6S)-3,4,5-trihydroxy-6-[[(2R,3S,4R,5S,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]oxan-2-yl]oxymethyl]oxan-2-yl] (4aS,6aS,6bR,8aR,9S,10S,12aR,14bS)-9-formyl-10-hydroxy-2,2,6a,6b,9,12a-hexamethyl-1,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylate
Synonyms:  
Molecular Formula:   C54H86O24
Standard InCHIKey:  JLSIUEOHGXDDEP-AXSBMVNJSA-N
Standard InCHI:  InChI=1S/C54H86O24/c1-49(2)13-15-54(16-14-52(5)23(24(54)17-49)7-8-30-50(3)11-10-31(58)51(4,22-57)29(50)9-12-53(30,52)6)48(70)78-47-42(69)43(77-46-41(68)37(64)33(60)26(19-56)74-46)35(62)28(76-47)21-72-45-40(67)38(65)34(61)27(75-45)20-71-44-39(66)36(63)32(59)25(18-55)73-44/h7,22,24-47,55-56,58-69H,8-21H2,1-6H3/t24-,25-,26-,27-,28-,29+,30?,31-,32+,33-,34-,35-,36+,37+,38+,39-,40-,41-,42-,43+,44+,45-,46+,47+,50-,51-,52+,53+,54-/m0/s1
Canonical SMILES:  OC[C@@H]1O[C@H](O[C@H]2[C@H](O)[C@H](O[C@H]([C@@H]2O)CO[C@H]2O[C@@H](CO[C@@H]3O[C@@H](CO)[C@H]([C@H]([C@@H]3O)O)O)[C@@H]([C@H]([C@@H]2O)O)O)OC(=O)[C@]23CC[C@@]4(C(=CCC5[C@@]4(C)CC[C@@H]4[C@]5(C)CC[C@@H]([C@@]4(C)C=O)O)[C@@H]3CC(CC2)(C)C)C)[C@H]([C@@H]([C@H]1O)O)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO25660 Gypsophila oldhamiana Species Caryophyllaceae Eukaryota roots PMID[18194870]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT2 Others Unspecified IC50 = 15200 nM 23316950

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC473459 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9908 High Similarity NPC473386
0.9907 High Similarity NPC323359
0.9815 High Similarity NPC75287
0.9815 High Similarity NPC305267
0.9815 High Similarity NPC476992
0.9815 High Similarity NPC51465
0.9815 High Similarity NPC26626
0.9815 High Similarity NPC288205
0.9725 High Similarity NPC69811
0.9725 High Similarity NPC123522
0.9725 High Similarity NPC475119
0.9725 High Similarity NPC309223
0.9725 High Similarity NPC473452
0.9725 High Similarity NPC8524
0.9725 High Similarity NPC191827
0.9725 High Similarity NPC33012
0.9725 High Similarity NPC102505
0.9725 High Similarity NPC475209
0.9725 High Similarity NPC286457
0.9725 High Similarity NPC220160
0.9725 High Similarity NPC475514
0.9725 High Similarity NPC470876
0.9725 High Similarity NPC473824
0.9725 High Similarity NPC104137
0.9725 High Similarity NPC85154
0.9722 High Similarity NPC164389
0.9722 High Similarity NPC475486
0.9636 High Similarity NPC237191
0.9633 High Similarity NPC291903
0.9633 High Similarity NPC37134
0.963 High Similarity NPC473826
0.963 High Similarity NPC114287
0.963 High Similarity NPC155410
0.963 High Similarity NPC114304
0.963 High Similarity NPC192600
0.963 High Similarity NPC251263
0.963 High Similarity NPC219180
0.963 High Similarity NPC46665
0.963 High Similarity NPC241909
0.963 High Similarity NPC295823
0.963 High Similarity NPC475287
0.963 High Similarity NPC174720
0.963 High Similarity NPC323341
0.963 High Similarity NPC475467
0.963 High Similarity NPC133818
0.963 High Similarity NPC309714
0.963 High Similarity NPC151543
0.963 High Similarity NPC166422
0.955 High Similarity NPC135849
0.955 High Similarity NPC25663
0.955 High Similarity NPC471577
0.955 High Similarity NPC207738
0.955 High Similarity NPC51564
0.9545 High Similarity NPC471580
0.9545 High Similarity NPC300419
0.9541 High Similarity NPC475160
0.9541 High Similarity NPC294453
0.9541 High Similarity NPC204414
0.9541 High Similarity NPC293330
0.9541 High Similarity NPC475140
0.9541 High Similarity NPC76972
0.9541 High Similarity NPC123199
0.9541 High Similarity NPC100639
0.9541 High Similarity NPC67857
0.9541 High Similarity NPC65105
0.9541 High Similarity NPC473714
0.9541 High Similarity NPC54636
0.9541 High Similarity NPC224381
0.9541 High Similarity NPC4328
0.9541 High Similarity NPC41061
0.9541 High Similarity NPC469782
0.9541 High Similarity NPC70809
0.9541 High Similarity NPC161717
0.9541 High Similarity NPC471385
0.9541 High Similarity NPC57484
0.9541 High Similarity NPC309907
0.9541 High Similarity NPC298034
0.9541 High Similarity NPC202828
0.9541 High Similarity NPC119592
0.9541 High Similarity NPC476068
0.9541 High Similarity NPC236638
0.9541 High Similarity NPC43550
0.9541 High Similarity NPC60557
0.9541 High Similarity NPC261506
0.9541 High Similarity NPC79643
0.9541 High Similarity NPC305981
0.9541 High Similarity NPC471550
0.9541 High Similarity NPC71065
0.9541 High Similarity NPC227551
0.9541 High Similarity NPC250247
0.9537 High Similarity NPC292677
0.9537 High Similarity NPC257468
0.9537 High Similarity NPC469946
0.9537 High Similarity NPC100383
0.9537 High Similarity NPC475504
0.9537 High Similarity NPC101744
0.9537 High Similarity NPC473373
0.9537 High Similarity NPC471383
0.9537 High Similarity NPC80843
0.9537 High Similarity NPC109079
0.9537 High Similarity NPC10320
0.9537 High Similarity NPC79718
0.9537 High Similarity NPC324875
0.9537 High Similarity NPC139044
0.9537 High Similarity NPC475516
0.9537 High Similarity NPC102439
0.9537 High Similarity NPC104400
0.9537 High Similarity NPC1046
0.9537 High Similarity NPC104071
0.9537 High Similarity NPC276093
0.9474 High Similarity NPC160452
0.9464 High Similarity NPC267694
0.9464 High Similarity NPC142151
0.9464 High Similarity NPC110385
0.9464 High Similarity NPC144644
0.9464 High Similarity NPC37860
0.9464 High Similarity NPC153673
0.9464 High Similarity NPC476991
0.9459 High Similarity NPC105800
0.9459 High Similarity NPC232237
0.9455 High Similarity NPC471384
0.9455 High Similarity NPC161674
0.945 High Similarity NPC73318
0.945 High Similarity NPC475208
0.945 High Similarity NPC258885
0.945 High Similarity NPC238935
0.945 High Similarity NPC96641
0.945 High Similarity NPC473343
0.945 High Similarity NPC163183
0.945 High Similarity NPC124296
0.945 High Similarity NPC150400
0.945 High Similarity NPC134835
0.9444 High Similarity NPC164419
0.9444 High Similarity NPC31839
0.9391 High Similarity NPC475368
0.9391 High Similarity NPC284449
0.9386 High Similarity NPC44716
0.9386 High Similarity NPC2370
0.9381 High Similarity NPC51099
0.9381 High Similarity NPC275225
0.9381 High Similarity NPC293031
0.9381 High Similarity NPC68767
0.9369 High Similarity NPC136768
0.9369 High Similarity NPC148417
0.9369 High Similarity NPC185466
0.9369 High Similarity NPC68175
0.9369 High Similarity NPC110633
0.9358 High Similarity NPC473383
0.9358 High Similarity NPC48249
0.9358 High Similarity NPC139894
0.9352 High Similarity NPC242611
0.9352 High Similarity NPC164194
0.9352 High Similarity NPC59804
0.9352 High Similarity NPC174679
0.9352 High Similarity NPC475296
0.9352 High Similarity NPC270667
0.9352 High Similarity NPC474589
0.9352 High Similarity NPC56713
0.9352 High Similarity NPC127056
0.9352 High Similarity NPC29069
0.9352 High Similarity NPC279554
0.9352 High Similarity NPC90856
0.9352 High Similarity NPC136877
0.9298 High Similarity NPC4749
0.9298 High Similarity NPC10607
0.9298 High Similarity NPC236870
0.9298 High Similarity NPC80986
0.9298 High Similarity NPC187290
0.9298 High Similarity NPC475591
0.9298 High Similarity NPC21691
0.9292 High Similarity NPC473645
0.9286 High Similarity NPC470513
0.9286 High Similarity NPC475899
0.9286 High Similarity NPC36831
0.9286 High Similarity NPC470514
0.9279 High Similarity NPC58448
0.9279 High Similarity NPC160415
0.9266 High Similarity NPC297208
0.9266 High Similarity NPC235841
0.9266 High Similarity NPC30397
0.9266 High Similarity NPC108748
0.9266 High Similarity NPC473481
0.9266 High Similarity NPC211798
0.9266 High Similarity NPC179434
0.9259 High Similarity NPC167383
0.9259 High Similarity NPC204407
0.9259 High Similarity NPC237503
0.9259 High Similarity NPC306746
0.9259 High Similarity NPC57362
0.9217 High Similarity NPC283417
0.9217 High Similarity NPC302543
0.9217 High Similarity NPC200049
0.9217 High Similarity NPC258617
0.9217 High Similarity NPC257211
0.9211 High Similarity NPC223301
0.9211 High Similarity NPC302887
0.9211 High Similarity NPC62725
0.9211 High Similarity NPC301449
0.9211 High Similarity NPC187618
0.9211 High Similarity NPC86222

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC473459 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8889 High Similarity NPD8328 Phase 3
0.8696 High Similarity NPD8295 Clinical (unspecified phase)
0.8407 Intermediate Similarity NPD8132 Clinical (unspecified phase)
0.8276 Intermediate Similarity NPD8133 Approved
0.7937 Intermediate Similarity NPD7319 Approved
0.784 Intermediate Similarity NPD7507 Approved
0.7805 Intermediate Similarity NPD8517 Approved
0.7805 Intermediate Similarity NPD8516 Approved
0.7805 Intermediate Similarity NPD8515 Approved
0.7759 Intermediate Similarity NPD6412 Phase 2
0.7724 Intermediate Similarity NPD8377 Approved
0.7724 Intermediate Similarity NPD8294 Approved
0.7692 Intermediate Similarity NPD6686 Approved
0.7661 Intermediate Similarity NPD8380 Approved
0.7661 Intermediate Similarity NPD8335 Approved
0.7661 Intermediate Similarity NPD8296 Approved
0.7661 Intermediate Similarity NPD8513 Phase 3
0.7661 Intermediate Similarity NPD8378 Approved
0.7661 Intermediate Similarity NPD8379 Approved
0.7578 Intermediate Similarity NPD7736 Approved
0.7568 Intermediate Similarity NPD7748 Approved
0.7522 Intermediate Similarity NPD7902 Approved
0.752 Intermediate Similarity NPD8033 Approved
0.7387 Intermediate Similarity NPD7515 Phase 2
0.7364 Intermediate Similarity NPD8293 Discontinued
0.728 Intermediate Similarity NPD7328 Approved
0.728 Intermediate Similarity NPD7327 Approved
0.7257 Intermediate Similarity NPD7901 Clinical (unspecified phase)
0.7257 Intermediate Similarity NPD7900 Approved
0.7222 Intermediate Similarity NPD7516 Approved
0.7188 Intermediate Similarity NPD6370 Approved
0.7143 Intermediate Similarity NPD8170 Clinical (unspecified phase)
0.7109 Intermediate Similarity NPD7503 Approved
0.7077 Intermediate Similarity NPD7492 Approved
0.7073 Intermediate Similarity NPD8413 Clinical (unspecified phase)
0.7031 Intermediate Similarity NPD6059 Approved
0.7031 Intermediate Similarity NPD6319 Approved
0.7031 Intermediate Similarity NPD6054 Approved
0.7023 Intermediate Similarity NPD6616 Approved
0.697 Remote Similarity NPD7078 Approved
0.6967 Remote Similarity NPD5345 Clinical (unspecified phase)
0.693 Remote Similarity NPD8035 Phase 2
0.693 Remote Similarity NPD8034 Phase 2
0.688 Remote Similarity NPD6882 Approved
0.688 Remote Similarity NPD8297 Approved
0.6864 Remote Similarity NPD7638 Approved
0.6846 Remote Similarity NPD6015 Approved
0.6846 Remote Similarity NPD6016 Approved
0.6807 Remote Similarity NPD7640 Approved
0.6807 Remote Similarity NPD7639 Approved
0.6797 Remote Similarity NPD6009 Approved
0.6797 Remote Similarity NPD7115 Discovery
0.6794 Remote Similarity NPD5988 Approved
0.6783 Remote Similarity NPD6411 Approved
0.6774 Remote Similarity NPD4061 Clinical (unspecified phase)
0.6759 Remote Similarity NPD7645 Phase 2
0.6742 Remote Similarity NPD6067 Discontinued
0.6724 Remote Similarity NPD8171 Discontinued
0.6724 Remote Similarity NPD6399 Phase 3
0.6716 Remote Similarity NPD8074 Phase 3
0.6696 Remote Similarity NPD7520 Clinical (unspecified phase)
0.6693 Remote Similarity NPD4632 Approved
0.6667 Remote Similarity NPD7128 Approved
0.6667 Remote Similarity NPD6675 Approved
0.6667 Remote Similarity NPD6402 Approved
0.6667 Remote Similarity NPD5739 Approved
0.664 Remote Similarity NPD6372 Approved
0.664 Remote Similarity NPD6373 Approved
0.6609 Remote Similarity NPD6101 Approved
0.6609 Remote Similarity NPD5764 Clinical (unspecified phase)
0.6587 Remote Similarity NPD5955 Clinical (unspecified phase)
0.6583 Remote Similarity NPD4225 Approved
0.656 Remote Similarity NPD7320 Approved
0.656 Remote Similarity NPD6899 Approved
0.656 Remote Similarity NPD6881 Approved
0.6547 Remote Similarity NPD8450 Suspended
0.6544 Remote Similarity NPD6033 Approved
0.6535 Remote Similarity NPD8130 Phase 1
0.6535 Remote Similarity NPD6650 Approved
0.6535 Remote Similarity NPD6649 Approved
0.6496 Remote Similarity NPD7983 Approved
0.648 Remote Similarity NPD5697 Approved
0.648 Remote Similarity NPD5701 Approved
0.6475 Remote Similarity NPD8449 Approved
0.6471 Remote Similarity NPD8448 Approved
0.6466 Remote Similarity NPD6921 Approved
0.6457 Remote Similarity NPD7290 Approved
0.6457 Remote Similarity NPD6883 Approved
0.6457 Remote Similarity NPD4634 Approved
0.6457 Remote Similarity NPD7102 Approved
0.6449 Remote Similarity NPD8391 Approved
0.6449 Remote Similarity NPD8392 Approved
0.6449 Remote Similarity NPD8390 Approved
0.6444 Remote Similarity NPD8341 Approved
0.6444 Remote Similarity NPD8340 Approved
0.6444 Remote Similarity NPD8299 Approved
0.6444 Remote Similarity NPD8342 Approved
0.6441 Remote Similarity NPD5778 Approved
0.6441 Remote Similarity NPD5779 Approved
0.641 Remote Similarity NPD46 Approved
0.641 Remote Similarity NPD6698 Approved
0.6406 Remote Similarity NPD6617 Approved
0.6406 Remote Similarity NPD6847 Approved
0.6406 Remote Similarity NPD6869 Approved
0.6397 Remote Similarity NPD8451 Approved
0.6379 Remote Similarity NPD7513 Clinical (unspecified phase)
0.6378 Remote Similarity NPD6014 Approved
0.6378 Remote Similarity NPD6012 Approved
0.6378 Remote Similarity NPD6013 Approved
0.637 Remote Similarity NPD7604 Phase 2
0.6364 Remote Similarity NPD6084 Phase 2
0.6364 Remote Similarity NPD6083 Phase 2
0.6349 Remote Similarity NPD5954 Clinical (unspecified phase)
0.6348 Remote Similarity NPD3618 Phase 1
0.6343 Remote Similarity NPD5983 Phase 2
0.6325 Remote Similarity NPD5328 Approved
0.6316 Remote Similarity NPD4786 Approved
0.6304 Remote Similarity NPD8336 Approved
0.6304 Remote Similarity NPD8337 Approved
0.6299 Remote Similarity NPD6011 Approved
0.6293 Remote Similarity NPD3573 Approved
0.629 Remote Similarity NPD7632 Discontinued
0.6288 Remote Similarity NPD8137 Clinical (unspecified phase)
0.6283 Remote Similarity NPD3667 Approved
0.6281 Remote Similarity NPD4697 Phase 3
0.6279 Remote Similarity NPD6401 Clinical (unspecified phase)
0.6277 Remote Similarity NPD6336 Discontinued
0.627 Remote Similarity NPD6008 Approved
0.623 Remote Similarity NPD4755 Approved
0.6228 Remote Similarity NPD3669 Approved
0.6228 Remote Similarity NPD3670 Clinical (unspecified phase)
0.6218 Remote Similarity NPD6079 Approved
0.6212 Remote Similarity NPD6940 Discontinued
0.6207 Remote Similarity NPD5330 Approved
0.6207 Remote Similarity NPD6409 Approved
0.6207 Remote Similarity NPD6684 Approved
0.6207 Remote Similarity NPD7521 Approved
0.6207 Remote Similarity NPD7146 Approved
0.6207 Remote Similarity NPD7334 Approved
0.6186 Remote Similarity NPD7285 Clinical (unspecified phase)
0.6179 Remote Similarity NPD8029 Clinical (unspecified phase)
0.6167 Remote Similarity NPD4202 Approved
0.6148 Remote Similarity NPD7839 Suspended
0.6133 Remote Similarity NPD7625 Phase 1
0.6131 Remote Similarity NPD7829 Approved
0.6131 Remote Similarity NPD7830 Approved
0.6129 Remote Similarity NPD4696 Approved
0.6129 Remote Similarity NPD5285 Approved
0.6129 Remote Similarity NPD4700 Approved
0.6129 Remote Similarity NPD5286 Approved
0.6127 Remote Similarity NPD8338 Approved
0.6119 Remote Similarity NPD7641 Discontinued
0.6106 Remote Similarity NPD7525 Registered
0.6103 Remote Similarity NPD8444 Approved
0.6103 Remote Similarity NPD8274 Clinical (unspecified phase)
0.6102 Remote Similarity NPD6672 Approved
0.6102 Remote Similarity NPD6903 Approved
0.6102 Remote Similarity NPD5737 Approved
0.6099 Remote Similarity NPD5956 Approved
0.609 Remote Similarity NPD6274 Approved
0.6083 Remote Similarity NPD7637 Suspended
0.6074 Remote Similarity NPD7100 Approved
0.6074 Remote Similarity NPD7101 Approved
0.6071 Remote Similarity NPD6118 Approved
0.6071 Remote Similarity NPD6114 Approved
0.6071 Remote Similarity NPD6697 Approved
0.6071 Remote Similarity NPD6115 Approved
0.6066 Remote Similarity NPD5695 Phase 3
0.6058 Remote Similarity NPD8080 Discontinued
0.6053 Remote Similarity NPD1780 Approved
0.6053 Remote Similarity NPD1779 Approved
0.6048 Remote Similarity NPD5696 Approved
0.6034 Remote Similarity NPD3665 Phase 1
0.6034 Remote Similarity NPD3133 Approved
0.6034 Remote Similarity NPD3666 Approved
0.6032 Remote Similarity NPD5224 Approved
0.6032 Remote Similarity NPD4633 Approved
0.6032 Remote Similarity NPD5226 Approved
0.6032 Remote Similarity NPD5211 Phase 2
0.6032 Remote Similarity NPD5225 Approved
0.6016 Remote Similarity NPD5222 Approved
0.6016 Remote Similarity NPD5220 Clinical (unspecified phase)
0.6016 Remote Similarity NPD5221 Approved
0.6016 Remote Similarity NPD4768 Approved
0.6016 Remote Similarity NPD4767 Approved
0.6 Remote Similarity NPD8387 Clinical (unspecified phase)
0.6 Remote Similarity NPD6335 Approved
0.5985 Remote Similarity NPD6909 Approved
0.5985 Remote Similarity NPD6908 Approved
0.5984 Remote Similarity NPD5174 Approved
0.5984 Remote Similarity NPD5175 Approved
0.5982 Remote Similarity NPD6116 Phase 1
0.597 Remote Similarity NPD6868 Approved
0.5969 Remote Similarity NPD7899 Clinical (unspecified phase)
0.5968 Remote Similarity NPD5173 Approved
0.5954 Remote Similarity NPD6371 Approved
0.5952 Remote Similarity NPD5223 Approved
0.5952 Remote Similarity NPD5344 Discontinued
0.5938 Remote Similarity NPD5141 Approved
0.5935 Remote Similarity NPD6356 Clinical (unspecified phase)

Structure

External Identifiers

PubChem CID   44451423
ChEMBL   CHEMBL438206
ZINC  

Physicochemical Properties

Molecular Weight:  1118.55
ALogP:  -5.8497
MLogP:  4.76
XLogP:  2.11
# Rotatable Bonds:  34
Polar Surface Area:  391.2
# H-Bond Aceptor:  24
# H-Bond Donor:  14
# Rings:  9
# Heavy Atoms:  78

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs