Natural Product: NPC469907

Natural Product ID:  NPC469907
Common Name:   Paucinervin D
IUPAC Name:   2,5-dimethyl-2-[(3E,7E)-4,8,12-trimethyltrideca-3,7,11-trienyl]-3,4-dihydrochromene-7,8-diol
Synonyms:   Paucinervin D
Molecular Formula:   C27H40O3
Standard InCHIKey:  BTLRXKRGQQIJSD-KDXVVQHGSA-N
Standard InCHI:  InChI=1S/C27H40O3/c1-19(2)10-7-11-20(3)12-8-13-21(4)14-9-16-27(6)17-15-23-22(5)18-24(28)25(29)26(23)30-27/h10,12,14,18,28-29H,7-9,11,13,15-17H2,1-6H3/b20-12+,21-14+
Canonical SMILES:  C/C(=CCCC1(C)CCc2c(O1)c(O)c(cc2C)O)/CC/C=C(/CCC=C(C)C)C
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO15264 Garcinia paucinervis Species Clusiaceae Eukaryota PMID[20594858]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT165 Cell Line HeLa Homo sapiens IC50 = 29500 nM 11277756

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC469907 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9248 High Similarity NPC198038
0.9154 High Similarity NPC127624
0.9147 High Similarity NPC126836
0.9134 High Similarity NPC181361
0.9104 High Similarity NPC234568
0.9098 High Similarity NPC35550
0.9062 High Similarity NPC470699
0.9023 High Similarity NPC234952
0.9023 High Similarity NPC248727
0.9023 High Similarity NPC265433
0.9023 High Similarity NPC270456
0.9023 High Similarity NPC162659
0.9023 High Similarity NPC227503
0.9023 High Similarity NPC474639
0.9023 High Similarity NPC230734
0.9015 High Similarity NPC317380
0.9008 High Similarity NPC202762
0.9008 High Similarity NPC86655
0.8978 High Similarity NPC469795
0.8978 High Similarity NPC50250
0.8976 High Similarity NPC122792
0.8976 High Similarity NPC228972
0.8968 High Similarity NPC74137
0.8955 High Similarity NPC105493
0.8947 High Similarity NPC240279
0.8947 High Similarity NPC112246
0.8947 High Similarity NPC94750
0.8947 High Similarity NPC260898
0.8947 High Similarity NPC470356
0.8947 High Similarity NPC234333
0.8947 High Similarity NPC112939
0.8947 High Similarity NPC151224
0.8947 High Similarity NPC474206
0.8947 High Similarity NPC214853
0.8947 High Similarity NPC47398
0.8947 High Similarity NPC180602
0.8947 High Similarity NPC121812
0.8947 High Similarity NPC55239
0.8939 High Similarity NPC475840
0.8939 High Similarity NPC32778
0.8931 High Similarity NPC15543
0.8915 High Similarity NPC250432
0.8915 High Similarity NPC169474
0.8915 High Similarity NPC293054
0.8915 High Similarity NPC82679
0.8915 High Similarity NPC246620
0.8915 High Similarity NPC124452
0.8915 High Similarity NPC324112
0.8915 High Similarity NPC282000
0.8915 High Similarity NPC5447
0.8915 High Similarity NPC236791
0.8915 High Similarity NPC74817
0.8915 High Similarity NPC159968
0.8915 High Similarity NPC210355
0.8906 High Similarity NPC60885
0.8906 High Similarity NPC234400
0.8905 High Similarity NPC474104
0.8897 High Similarity NPC71046
0.8889 High Similarity NPC127218
0.8889 High Similarity NPC471183
0.8889 High Similarity NPC70682
0.8889 High Similarity NPC260741
0.8889 High Similarity NPC245207
0.8889 High Similarity NPC32630
0.8889 High Similarity NPC319647
0.8889 High Similarity NPC25966
0.8881 High Similarity NPC306441
0.8881 High Similarity NPC269091
0.8881 High Similarity NPC16435
0.8881 High Similarity NPC302701
0.8872 High Similarity NPC276026
0.8872 High Similarity NPC188378
0.8872 High Similarity NPC206737
0.8872 High Similarity NPC289258
0.8872 High Similarity NPC555
0.8872 High Similarity NPC469659
0.8872 High Similarity NPC7515
0.8872 High Similarity NPC125649
0.8872 High Similarity NPC56764
0.8872 High Similarity NPC209199
0.8857 High Similarity NPC473876
0.8855 High Similarity NPC214860
0.8855 High Similarity NPC220935
0.8849 High Similarity NPC211758
0.8849 High Similarity NPC233980
0.8849 High Similarity NPC87794
0.8846 High Similarity NPC226331
0.8846 High Similarity NPC46274
0.8846 High Similarity NPC28765
0.8846 High Similarity NPC154866
0.8841 High Similarity NPC473108
0.8837 High Similarity NPC214406
0.8837 High Similarity NPC76451
0.8837 High Similarity NPC44748
0.8837 High Similarity NPC18924
0.8837 High Similarity NPC78974
0.8837 High Similarity NPC223136
0.8837 High Similarity NPC476006
0.8837 High Similarity NPC103823
0.8837 High Similarity NPC28730
0.8832 High Similarity NPC2613
0.8832 High Similarity NPC475891
0.8832 High Similarity NPC204347
0.8832 High Similarity NPC59841
0.8824 High Similarity NPC309124
0.8824 High Similarity NPC259519
0.8824 High Similarity NPC184797
0.8824 High Similarity NPC109240
0.8815 High Similarity NPC211549
0.8815 High Similarity NPC103976
0.8815 High Similarity NPC102904
0.8815 High Similarity NPC107551
0.8815 High Similarity NPC176051
0.8815 High Similarity NPC474282
0.8815 High Similarity NPC276490
0.8815 High Similarity NPC326797
0.8806 High Similarity NPC10314
0.8806 High Similarity NPC313081
0.8806 High Similarity NPC294884
0.8806 High Similarity NPC200557
0.8806 High Similarity NPC61946
0.8806 High Similarity NPC164787
0.8806 High Similarity NPC69029
0.8806 High Similarity NPC108198
0.8806 High Similarity NPC158142
0.8797 High Similarity NPC36661
0.8797 High Similarity NPC105554
0.8797 High Similarity NPC229442
0.8797 High Similarity NPC11060
0.8797 High Similarity NPC168059
0.8788 High Similarity NPC82503
0.8788 High Similarity NPC474356
0.8788 High Similarity NPC309787
0.8788 High Similarity NPC12275
0.8788 High Similarity NPC45715
0.8786 High Similarity NPC474397
0.8779 High Similarity NPC45824
0.8769 High Similarity NPC127587
0.8769 High Similarity NPC266555
0.8769 High Similarity NPC252131
0.876 High Similarity NPC299584
0.876 High Similarity NPC233410
0.876 High Similarity NPC105925
0.876 High Similarity NPC82483
0.876 High Similarity NPC472093
0.876 High Similarity NPC193544
0.876 High Similarity NPC117214
0.876 High Similarity NPC208950
0.876 High Similarity NPC203133
0.876 High Similarity NPC298757
0.876 High Similarity NPC116907
0.876 High Similarity NPC17943
0.876 High Similarity NPC221077
0.876 High Similarity NPC57490
0.876 High Similarity NPC251855
0.876 High Similarity NPC265483
0.876 High Similarity NPC475169
0.8759 High Similarity NPC265075
0.8759 High Similarity NPC35216
0.8759 High Similarity NPC471389
0.8759 High Similarity NPC247291
0.875 High Similarity NPC55947
0.875 High Similarity NPC232164
0.875 High Similarity NPC292882
0.875 High Similarity NPC473739
0.875 High Similarity NPC236306
0.8741 High Similarity NPC133025
0.8741 High Similarity NPC470802
0.8741 High Similarity NPC173660
0.8741 High Similarity NPC472336
0.8741 High Similarity NPC472334
0.8741 High Similarity NPC202846
0.8741 High Similarity NPC143139
0.874 High Similarity NPC145780
0.8731 High Similarity NPC106215
0.8731 High Similarity NPC478085
0.8731 High Similarity NPC256307
0.8731 High Similarity NPC66840
0.8722 High Similarity NPC6451
0.8722 High Similarity NPC470752
0.8722 High Similarity NPC102256
0.8722 High Similarity NPC14224
0.8722 High Similarity NPC161958
0.8712 High Similarity NPC51840
0.8712 High Similarity NPC311680
0.8712 High Similarity NPC472338
0.8712 High Similarity NPC474481
0.8712 High Similarity NPC234488
0.8712 High Similarity NPC299221
0.8712 High Similarity NPC91291
0.8705 High Similarity NPC277951
0.8705 High Similarity NPC317237
0.8705 High Similarity NPC63879
0.8705 High Similarity NPC473845
0.8705 High Similarity NPC44530
0.8696 High Similarity NPC107161
0.8696 High Similarity NPC323126
0.8692 High Similarity NPC223953
0.8692 High Similarity NPC112596
0.8686 High Similarity NPC254759

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC469907 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8915 High Similarity NPD1530 Clinical (unspecified phase)
0.8846 High Similarity NPD1529 Clinical (unspecified phase)
0.8605 High Similarity NPD4749 Approved
0.8582 High Similarity NPD1612 Clinical (unspecified phase)
0.8582 High Similarity NPD1613 Approved
0.8496 Intermediate Similarity NPD3027 Phase 3
0.8496 Intermediate Similarity NPD4625 Phase 3
0.8296 Intermediate Similarity NPD6410 Clinical (unspecified phase)
0.8168 Intermediate Similarity NPD1610 Phase 2
0.8148 Intermediate Similarity NPD4908 Phase 1
0.8047 Intermediate Similarity NPD6671 Approved
0.8029 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.8016 Intermediate Similarity NPD228 Approved
0.8014 Intermediate Similarity NPD6099 Approved
0.8014 Intermediate Similarity NPD6100 Approved
0.7868 Intermediate Similarity NPD6917 Clinical (unspecified phase)
0.7863 Intermediate Similarity NPD1548 Phase 1
0.7852 Intermediate Similarity NPD6696 Suspended
0.7815 Intermediate Similarity NPD1934 Approved
0.781 Intermediate Similarity NPD3018 Phase 2
0.7761 Intermediate Similarity NPD422 Phase 1
0.7724 Intermediate Similarity NPD6674 Discontinued
0.7681 Intermediate Similarity NPD2861 Phase 2
0.7671 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7667 Intermediate Similarity NPD1653 Approved
0.766 Intermediate Similarity NPD3619 Clinical (unspecified phase)
0.766 Intermediate Similarity NPD3620 Phase 2
0.766 Intermediate Similarity NPD4060 Phase 1
0.766 Intermediate Similarity NPD1558 Phase 1
0.7647 Intermediate Similarity NPD2982 Phase 2
0.7647 Intermediate Similarity NPD2801 Approved
0.7647 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.7647 Intermediate Similarity NPD2983 Phase 2
0.7647 Intermediate Similarity NPD1465 Phase 2
0.763 Intermediate Similarity NPD3705 Approved
0.7615 Intermediate Similarity NPD5283 Phase 1
0.7578 Intermediate Similarity NPD4750 Phase 3
0.7576 Intermediate Similarity NPD7340 Approved
0.7574 Intermediate Similarity NPD2981 Phase 2
0.7564 Intermediate Similarity NPD6234 Discontinued
0.7548 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7548 Intermediate Similarity NPD3882 Suspended
0.7517 Intermediate Similarity NPD1511 Approved
0.75 Intermediate Similarity NPD7157 Approved
0.75 Intermediate Similarity NPD2684 Approved
0.7483 Intermediate Similarity NPD5698 Clinical (unspecified phase)
0.7481 Intermediate Similarity NPD1398 Phase 1
0.7468 Intermediate Similarity NPD7199 Phase 2
0.7464 Intermediate Similarity NPD8651 Approved
0.7455 Intermediate Similarity NPD8054 Approved
0.7455 Intermediate Similarity NPD8053 Approved
0.7453 Intermediate Similarity NPD7228 Approved
0.7442 Intermediate Similarity NPD3022 Approved
0.7442 Intermediate Similarity NPD3021 Approved
0.744 Intermediate Similarity NPD846 Approved
0.744 Intermediate Similarity NPD940 Approved
0.7438 Intermediate Similarity NPD6166 Phase 2
0.7438 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7438 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7417 Intermediate Similarity NPD1512 Approved
0.7405 Intermediate Similarity NPD7843 Approved
0.7394 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7391 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.7391 Intermediate Similarity NPD3600 Clinical (unspecified phase)
0.7379 Intermediate Similarity NPD6111 Discontinued
0.7375 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7372 Intermediate Similarity NPD1091 Approved
0.7362 Intermediate Similarity NPD7074 Phase 3
0.7355 Intermediate Similarity NPD37 Approved
0.7347 Intermediate Similarity NPD2029 Clinical (unspecified phase)
0.7325 Intermediate Similarity NPD4965 Approved
0.7325 Intermediate Similarity NPD4966 Approved
0.7325 Intermediate Similarity NPD4967 Phase 2
0.7324 Intermediate Similarity NPD7095 Approved
0.7315 Intermediate Similarity NPD3750 Approved
0.7303 Intermediate Similarity NPD1940 Clinical (unspecified phase)
0.7301 Intermediate Similarity NPD7054 Approved
0.7301 Intermediate Similarity NPD5844 Phase 1
0.7297 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.7287 Intermediate Similarity NPD290 Approved
0.7273 Intermediate Similarity NPD4005 Discontinued
0.7261 Intermediate Similarity NPD2560 Approved
0.7261 Intermediate Similarity NPD2563 Approved
0.7256 Intermediate Similarity NPD7472 Approved
0.7241 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.7241 Intermediate Similarity NPD5124 Phase 1
0.7241 Intermediate Similarity NPD5735 Approved
0.7237 Intermediate Similarity NPD7447 Phase 1
0.723 Intermediate Similarity NPD5763 Approved
0.723 Intermediate Similarity NPD3540 Phase 1
0.723 Intermediate Similarity NPD5762 Approved
0.7226 Intermediate Similarity NPD4626 Approved
0.7205 Intermediate Similarity NPD6232 Discontinued
0.7205 Intermediate Similarity NPD6071 Discontinued
0.72 Intermediate Similarity NPD3892 Phase 2
0.7197 Intermediate Similarity NPD7819 Suspended
0.719 Intermediate Similarity NPD5261 Clinical (unspecified phase)
0.7179 Intermediate Similarity NPD5089 Approved
0.7179 Intermediate Similarity NPD5090 Approved
0.7178 Intermediate Similarity NPD7473 Discontinued
0.7162 Intermediate Similarity NPD3539 Phase 1
0.7152 Intermediate Similarity NPD5307 Clinical (unspecified phase)
0.7152 Intermediate Similarity NPD3817 Phase 2
0.7152 Intermediate Similarity NPD2677 Approved
0.7134 Intermediate Similarity NPD3818 Discontinued
0.7133 Intermediate Similarity NPD1652 Phase 2
0.7124 Intermediate Similarity NPD1754 Clinical (unspecified phase)
0.7118 Intermediate Similarity NPD7906 Approved
0.7117 Intermediate Similarity NPD27 Approved
0.7117 Intermediate Similarity NPD2489 Approved
0.7115 Intermediate Similarity NPD4675 Approved
0.7115 Intermediate Similarity NPD4678 Approved
0.7114 Intermediate Similarity NPD1375 Discontinued
0.7105 Intermediate Similarity NPD7124 Phase 2
0.7103 Intermediate Similarity NPD2674 Phase 3
0.7095 Intermediate Similarity NPD6029 Clinical (unspecified phase)
0.7095 Intermediate Similarity NPD6028 Clinical (unspecified phase)
0.7087 Intermediate Similarity NPD1242 Phase 1
0.7086 Intermediate Similarity NPD7466 Approved
0.7083 Intermediate Similarity NPD7312 Approved
0.7083 Intermediate Similarity NPD7313 Approved
0.7083 Intermediate Similarity NPD7311 Approved
0.7083 Intermediate Similarity NPD4578 Approved
0.7083 Intermediate Similarity NPD7310 Approved
0.7083 Intermediate Similarity NPD4577 Approved
0.7066 Intermediate Similarity NPD7251 Discontinued
0.7063 Intermediate Similarity NPD7075 Discontinued
0.7063 Intermediate Similarity NPD4055 Discovery
0.7063 Intermediate Similarity NPD7975 Clinical (unspecified phase)
0.7059 Intermediate Similarity NPD7212 Phase 2
0.7059 Intermediate Similarity NPD7213 Phase 3
0.7055 Intermediate Similarity NPD2970 Approved
0.7055 Intermediate Similarity NPD2969 Approved
0.7055 Intermediate Similarity NPD2238 Phase 2
0.7051 Intermediate Similarity NPD6055 Clinical (unspecified phase)
0.7044 Intermediate Similarity NPD6374 Clinical (unspecified phase)
0.7041 Intermediate Similarity NPD7309 Approved
0.7039 Intermediate Similarity NPD2219 Phase 1
0.703 Intermediate Similarity NPD8251 Approved
0.703 Intermediate Similarity NPD8252 Approved
0.703 Intermediate Similarity NPD8099 Discontinued
0.7029 Intermediate Similarity NPD1357 Approved
0.7029 Intermediate Similarity NPD5691 Approved
0.7024 Intermediate Similarity NPD7808 Phase 3
0.7024 Intermediate Similarity NPD7549 Discontinued
0.7021 Intermediate Similarity NPD5327 Phase 3
0.7018 Intermediate Similarity NPD6843 Phase 3
0.7018 Intermediate Similarity NPD6841 Approved
0.7018 Intermediate Similarity NPD6842 Approved
0.7014 Intermediate Similarity NPD5752 Clinical (unspecified phase)
0.7013 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.7013 Intermediate Similarity NPD4160 Clinical (unspecified phase)
0.7007 Intermediate Similarity NPD230 Phase 1
0.7007 Intermediate Similarity NPD6355 Discontinued
0.7006 Intermediate Similarity NPD6797 Phase 2
0.7006 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD7266 Discontinued
0.7 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.6994 Remote Similarity NPD3051 Approved
0.6993 Remote Similarity NPD6584 Phase 3
0.6988 Remote Similarity NPD8156 Discontinued
0.6981 Remote Similarity NPD7096 Clinical (unspecified phase)
0.698 Remote Similarity NPD3748 Approved
0.6975 Remote Similarity NPD5494 Approved
0.6964 Remote Similarity NPD7240 Approved
0.6962 Remote Similarity NPD6072 Discontinued
0.6959 Remote Similarity NPD4097 Suspended
0.6959 Remote Similarity NPD4663 Approved
0.6959 Remote Similarity NPD6353 Approved
0.6954 Remote Similarity NPD1549 Phase 2
0.6954 Remote Similarity NPD2424 Discontinued
0.695 Remote Similarity NPD2232 Approved
0.695 Remote Similarity NPD2233 Approved
0.695 Remote Similarity NPD2230 Approved
0.695 Remote Similarity NPD1608 Approved
0.6948 Remote Similarity NPD4357 Discontinued
0.6941 Remote Similarity NPD7090 Clinical (unspecified phase)
0.6939 Remote Similarity NPD1240 Approved
0.6937 Remote Similarity NPD8443 Clinical (unspecified phase)
0.6933 Remote Similarity NPD6959 Discontinued
0.6933 Remote Similarity NPD2161 Phase 2
0.6923 Remote Similarity NPD2797 Approved
0.6923 Remote Similarity NPD4338 Clinical (unspecified phase)
0.6918 Remote Similarity NPD3144 Approved
0.6918 Remote Similarity NPD5110 Phase 2
0.6918 Remote Similarity NPD5111 Phase 2
0.6918 Remote Similarity NPD5109 Approved
0.6918 Remote Similarity NPD3145 Approved
0.6913 Remote Similarity NPD4537 Clinical (unspecified phase)
0.6913 Remote Similarity NPD4536 Approved
0.6913 Remote Similarity NPD4538 Approved
0.6908 Remote Similarity NPD5177 Phase 3
0.6903 Remote Similarity NPD7410 Clinical (unspecified phase)
0.6903 Remote Similarity NPD2532 Approved
0.6903 Remote Similarity NPD2533 Approved
0.6903 Remote Similarity NPD2534 Approved
0.6899 Remote Similarity NPD4380 Phase 2
0.6892 Remote Similarity NPD447 Suspended
0.689 Remote Similarity NPD3787 Discontinued

Structure

External Identifiers

PubChem CID   52949815
ChEMBL   CHEMBL1254111
ZINC  

Physicochemical Properties

Molecular Weight:  412.30
ALogP:  4.5717
MLogP:  4.1
XLogP:  7.61
# Rotatable Bonds:  17
Polar Surface Area:  49.69
# H-Bond Aceptor:  0
# H-Bond Donor:  2
# Rings:  2
# Heavy Atoms:  30

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
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