Natural Product: NPC469636

Natural Product ID:  NPC469636
Common Name:   Lyciferin D
IUPAC Name:   [(1R,2Z,4S,9E)-4-acetyloxy-2,5,5,9-tetramethylcycloundeca-2,9-dien-1-yl] benzoate
Synonyms:   Lyciferin D
Molecular Formula:   C24H32O4
Standard InCHIKey:  WZEJCPHMOSKQHH-BFVMRLTISA-N
Standard InCHI:  InChI=1S/C24H32O4/c1-17-10-9-15-24(4,5)22(27-19(3)25)16-18(2)21(14-13-17)28-23(26)20-11-7-6-8-12-20/h6-8,11-13,16,21-22H,9-10,14-15H2,1-5H3/b17-13+,18-16-/t21-,22+/m1/s1
Canonical SMILES:  CC(=O)O[C@H]1/C=C(/C)[C@@H](C/C=C(/CCCC1(C)C)C)OC(=O)c1ccccc1
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO33092 ferula lycia Species Apiaceae Eukaryota PMID[20329739]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT111 Cell Line K562 Homo sapiens IC50 > 50000 nM 19966789
NPT2 Others Unspecified IC50 = 45000 nM 541686

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC469636 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9307 High Similarity NPC474365
0.9307 High Similarity NPC301943
0.91 High Similarity NPC78701
0.91 High Similarity NPC35448
0.901 High Similarity NPC146351
0.901 High Similarity NPC325497
0.9 High Similarity NPC92754
0.9 High Similarity NPC276775
0.9 High Similarity NPC249912
0.8981 High Similarity NPC307651
0.8972 High Similarity NPC270699
0.8972 High Similarity NPC82899
0.8962 High Similarity NPC251854
0.8962 High Similarity NPC93084
0.8929 High Similarity NPC473243
0.8911 High Similarity NPC225060
0.8889 High Similarity NPC128368
0.8879 High Similarity NPC1082
0.8879 High Similarity NPC305912
0.8868 High Similarity NPC83628
0.8868 High Similarity NPC17417
0.8868 High Similarity NPC474364
0.8868 High Similarity NPC10251
0.8868 High Similarity NPC265407
0.885 High Similarity NPC50872
0.88 High Similarity NPC130398
0.8785 High Similarity NPC214067
0.8785 High Similarity NPC196246
0.8774 High Similarity NPC56493
0.8762 High Similarity NPC269457
0.8738 High Similarity NPC70624
0.8738 High Similarity NPC42211
0.8704 High Similarity NPC476003
0.8704 High Similarity NPC474157
0.8679 High Similarity NPC119271
0.8641 High Similarity NPC118343
0.8641 High Similarity NPC203925
0.8611 High Similarity NPC174099
0.8559 High Similarity NPC210092
0.8545 High Similarity NPC161611
0.8532 High Similarity NPC210089
0.8491 Intermediate Similarity NPC31786
0.8476 Intermediate Similarity NPC188895
0.8475 Intermediate Similarity NPC275576
0.8475 Intermediate Similarity NPC476599
0.8468 Intermediate Similarity NPC153053
0.8468 Intermediate Similarity NPC474363
0.8455 Intermediate Similarity NPC321852
0.8411 Intermediate Similarity NPC209632
0.8403 Intermediate Similarity NPC204579
0.8403 Intermediate Similarity NPC169913
0.8396 Intermediate Similarity NPC89886
0.8378 Intermediate Similarity NPC272524
0.8376 Intermediate Similarity NPC472703
0.8364 Intermediate Similarity NPC260818
0.8333 Intermediate Similarity NPC30594
0.8333 Intermediate Similarity NPC37622
0.8319 Intermediate Similarity NPC149691
0.8318 Intermediate Similarity NPC114594
0.8305 Intermediate Similarity NPC472704
0.8304 Intermediate Similarity NPC308744
0.83 Intermediate Similarity NPC173443
0.8288 Intermediate Similarity NPC474314
0.8288 Intermediate Similarity NPC158282
0.825 Intermediate Similarity NPC473220
0.825 Intermediate Similarity NPC470753
0.825 Intermediate Similarity NPC110211
0.825 Intermediate Similarity NPC472706
0.8235 Intermediate Similarity NPC295664
0.823 Intermediate Similarity NPC474685
0.8224 Intermediate Similarity NPC60679
0.8214 Intermediate Similarity NPC474176
0.82 Intermediate Similarity NPC304760
0.8198 Intermediate Similarity NPC167504
0.8197 Intermediate Similarity NPC147561
0.8197 Intermediate Similarity NPC475508
0.8197 Intermediate Similarity NPC272946
0.8197 Intermediate Similarity NPC42234
0.819 Intermediate Similarity NPC204784
0.8182 Intermediate Similarity NPC85493
0.8182 Intermediate Similarity NPC269023
0.8182 Intermediate Similarity NPC99846
0.8182 Intermediate Similarity NPC472707
0.8174 Intermediate Similarity NPC469574
0.8167 Intermediate Similarity NPC470765
0.8158 Intermediate Similarity NPC226093
0.8142 Intermediate Similarity NPC196075
0.8131 Intermediate Similarity NPC45613
0.813 Intermediate Similarity NPC470278
0.8125 Intermediate Similarity NPC79496
0.8119 Intermediate Similarity NPC220893
0.81 Intermediate Similarity NPC89377
0.8095 Intermediate Similarity NPC270654
0.8065 Intermediate Similarity NPC477360
0.8065 Intermediate Similarity NPC238370
0.8065 Intermediate Similarity NPC233860
0.8065 Intermediate Similarity NPC233692
0.8065 Intermediate Similarity NPC239358
0.8065 Intermediate Similarity NPC472394
0.8058 Intermediate Similarity NPC77273
0.8056 Intermediate Similarity NPC234305
0.8049 Intermediate Similarity NPC473247
0.8 Intermediate Similarity NPC477364
0.8 Intermediate Similarity NPC472316
0.8 Intermediate Similarity NPC474376
0.8 Intermediate Similarity NPC100353
0.8 Intermediate Similarity NPC475203
0.8 Intermediate Similarity NPC472248
0.8 Intermediate Similarity NPC472656
0.8 Intermediate Similarity NPC318107
0.8 Intermediate Similarity NPC472315
0.7982 Intermediate Similarity NPC477411
0.7982 Intermediate Similarity NPC85977
0.7981 Intermediate Similarity NPC261181
0.7963 Intermediate Similarity NPC25458
0.7961 Intermediate Similarity NPC119631
0.7944 Intermediate Similarity NPC217621
0.7944 Intermediate Similarity NPC472318
0.7944 Intermediate Similarity NPC98911
0.7937 Intermediate Similarity NPC48929
0.7937 Intermediate Similarity NPC203486
0.7937 Intermediate Similarity NPC472250
0.7937 Intermediate Similarity NPC311492
0.7937 Intermediate Similarity NPC126516
0.7937 Intermediate Similarity NPC324898
0.7937 Intermediate Similarity NPC134937
0.7937 Intermediate Similarity NPC298547
0.7937 Intermediate Similarity NPC153617
0.7937 Intermediate Similarity NPC28836
0.7937 Intermediate Similarity NPC474608
0.7937 Intermediate Similarity NPC477368
0.7937 Intermediate Similarity NPC329913
0.7937 Intermediate Similarity NPC477359
0.7934 Intermediate Similarity NPC246166
0.7928 Intermediate Similarity NPC249811
0.7917 Intermediate Similarity NPC223351
0.7913 Intermediate Similarity NPC474095
0.7913 Intermediate Similarity NPC306740
0.79 Intermediate Similarity NPC58616
0.79 Intermediate Similarity NPC294134
0.7881 Intermediate Similarity NPC472708
0.7874 Intermediate Similarity NPC475262
0.7874 Intermediate Similarity NPC200154
0.7874 Intermediate Similarity NPC17877
0.7874 Intermediate Similarity NPC265459
0.7874 Intermediate Similarity NPC270364
0.7874 Intermediate Similarity NPC149401
0.7874 Intermediate Similarity NPC290833
0.7874 Intermediate Similarity NPC477367
0.7874 Intermediate Similarity NPC472247
0.7874 Intermediate Similarity NPC473399
0.7874 Intermediate Similarity NPC473216
0.7874 Intermediate Similarity NPC195647
0.7874 Intermediate Similarity NPC477896
0.7874 Intermediate Similarity NPC66761
0.7874 Intermediate Similarity NPC279637
0.7874 Intermediate Similarity NPC232888
0.7874 Intermediate Similarity NPC472577
0.7874 Intermediate Similarity NPC79699
0.7874 Intermediate Similarity NPC291638
0.7874 Intermediate Similarity NPC477893
0.7869 Intermediate Similarity NPC121272
0.7864 Intermediate Similarity NPC213156
0.7864 Intermediate Similarity NPC240108
0.7863 Intermediate Similarity NPC45794
0.7857 Intermediate Similarity NPC40178
0.7851 Intermediate Similarity NPC471466
0.785 Intermediate Similarity NPC229242
0.7845 Intermediate Similarity NPC471616
0.784 Intermediate Similarity NPC475478
0.784 Intermediate Similarity NPC72915
0.7838 Intermediate Similarity NPC136962
0.7812 Intermediate Similarity NPC285221
0.7812 Intermediate Similarity NPC472551
0.7812 Intermediate Similarity NPC202729
0.7812 Intermediate Similarity NPC52523
0.7812 Intermediate Similarity NPC194769
0.7812 Intermediate Similarity NPC472372
0.7812 Intermediate Similarity NPC217673
0.7812 Intermediate Similarity NPC472374
0.7812 Intermediate Similarity NPC472545
0.7812 Intermediate Similarity NPC477358
0.781 Intermediate Similarity NPC23453
0.7807 Intermediate Similarity NPC139946
0.7805 Intermediate Similarity NPC51292
0.7798 Intermediate Similarity NPC304873
0.7797 Intermediate Similarity NPC293424
0.7787 Intermediate Similarity NPC125053
0.7778 Intermediate Similarity NPC15083
0.7778 Intermediate Similarity NPC475569
0.7778 Intermediate Similarity NPC190298
0.7768 Intermediate Similarity NPC47536
0.7768 Intermediate Similarity NPC20485
0.7767 Intermediate Similarity NPC9822
0.776 Intermediate Similarity NPC194979
0.776 Intermediate Similarity NPC471832
0.7759 Intermediate Similarity NPC228936
0.7757 Intermediate Similarity NPC253423
0.7752 Intermediate Similarity NPC86772
0.7752 Intermediate Similarity NPC27721

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC469636 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9057 High Similarity NPD2181 Clinical (unspecified phase)
0.8868 High Similarity NPD2182 Approved
0.8641 High Similarity NPD1238 Approved
0.8491 Intermediate Similarity NPD164 Approved
0.8349 Intermediate Similarity NPD6831 Clinical (unspecified phase)
0.8291 Intermediate Similarity NPD6287 Discontinued
0.8108 Intermediate Similarity NPD2067 Discontinued
0.8 Intermediate Similarity NPD9259 Approved
0.8 Intermediate Similarity NPD9257 Approved
0.7981 Intermediate Similarity NPD1202 Approved
0.7903 Intermediate Similarity NPD5952 Clinical (unspecified phase)
0.776 Intermediate Similarity NPD7008 Discontinued
0.7759 Intermediate Similarity NPD2629 Approved
0.7759 Intermediate Similarity NPD690 Clinical (unspecified phase)
0.7727 Intermediate Similarity NPD6647 Phase 2
0.7692 Intermediate Similarity NPD9258 Approved
0.7692 Intermediate Similarity NPD9256 Approved
0.768 Intermediate Similarity NPD6832 Phase 2
0.7667 Intermediate Similarity NPD3412 Clinical (unspecified phase)
0.7664 Intermediate Similarity NPD1989 Approved
0.7658 Intermediate Similarity NPD1237 Approved
0.7652 Intermediate Similarity NPD1609 Clinical (unspecified phase)
0.7647 Intermediate Similarity NPD9545 Approved
0.7642 Intermediate Similarity NPD2198 Approved
0.7642 Intermediate Similarity NPD2199 Approved
0.7634 Intermediate Similarity NPD7702 Clinical (unspecified phase)
0.7607 Intermediate Similarity NPD5951 Approved
0.7524 Intermediate Similarity NPD3673 Approved
0.7524 Intermediate Similarity NPD3672 Approved
0.7523 Intermediate Similarity NPD9495 Approved
0.75 Intermediate Similarity NPD7713 Phase 3
0.75 Intermediate Similarity NPD5909 Discontinued
0.748 Intermediate Similarity NPD3972 Approved
0.7479 Intermediate Similarity NPD9493 Approved
0.7455 Intermediate Similarity NPD2066 Phase 3
0.7411 Intermediate Similarity NPD1931 Clinical (unspecified phase)
0.7411 Intermediate Similarity NPD1930 Approved
0.7411 Intermediate Similarity NPD1929 Approved
0.7407 Intermediate Similarity NPD9260 Approved
0.7405 Intermediate Similarity NPD2569 Approved
0.7405 Intermediate Similarity NPD2567 Approved
0.7404 Intermediate Similarity NPD1087 Approved
0.7395 Intermediate Similarity NPD4198 Discontinued
0.7383 Intermediate Similarity NPD1088 Approved
0.7381 Intermediate Similarity NPD6007 Clinical (unspecified phase)
0.7373 Intermediate Similarity NPD1241 Discontinued
0.7368 Intermediate Similarity NPD3134 Approved
0.7353 Intermediate Similarity NPD7236 Approved
0.7344 Intermediate Similarity NPD6039 Approved
0.7333 Intermediate Similarity NPD4628 Phase 3
0.7317 Intermediate Similarity NPD7457 Clinical (unspecified phase)
0.7315 Intermediate Similarity NPD5122 Clinical (unspecified phase)
0.7304 Intermediate Similarity NPD1358 Approved
0.73 Intermediate Similarity NPD9490 Approved
0.7297 Intermediate Similarity NPD7798 Approved
0.7288 Intermediate Similarity NPD7094 Approved
0.7288 Intermediate Similarity NPD6858 Approved
0.7264 Intermediate Similarity NPD800 Approved
0.7258 Intermediate Similarity NPD1547 Clinical (unspecified phase)
0.7244 Intermediate Similarity NPD1019 Discontinued
0.7238 Intermediate Similarity NPD1282 Approved
0.7236 Intermediate Similarity NPD7163 Clinical (unspecified phase)
0.7222 Intermediate Similarity NPD5667 Approved
0.7207 Intermediate Similarity NPD5926 Approved
0.72 Intermediate Similarity NPD9717 Approved
0.7197 Intermediate Similarity NPD3528 Clinical (unspecified phase)
0.7196 Intermediate Similarity NPD1089 Approved
0.7196 Intermediate Similarity NPD1086 Approved
0.7196 Intermediate Similarity NPD1090 Approved
0.7184 Intermediate Similarity NPD9491 Approved
0.7179 Intermediate Similarity NPD4234 Approved
0.7179 Intermediate Similarity NPD4233 Approved
0.7176 Intermediate Similarity NPD3373 Approved
0.7143 Intermediate Similarity NPD5277 Phase 2
0.7131 Intermediate Similarity NPD2347 Approved
0.712 Intermediate Similarity NPD518 Clinical (unspecified phase)
0.7109 Intermediate Similarity NPD5740 Clinical (unspecified phase)
0.7109 Intermediate Similarity NPD6085 Phase 2
0.7105 Intermediate Similarity NPD9261 Approved
0.7103 Intermediate Similarity NPD5347 Phase 2
0.7103 Intermediate Similarity NPD5346 Phase 2
0.7092 Intermediate Similarity NPD7239 Suspended
0.7091 Intermediate Similarity NPD1693 Approved
0.7083 Intermediate Similarity NPD6010 Discontinued
0.7075 Intermediate Similarity NPD4793 Discontinued
0.7063 Intermediate Similarity NPD6637 Approved
0.7045 Intermediate Similarity NPD4307 Phase 2
0.7034 Intermediate Similarity NPD3646 Clinical (unspecified phase)
0.7034 Intermediate Similarity NPD5235 Approved
0.7034 Intermediate Similarity NPD5239 Approved
0.7034 Intermediate Similarity NPD1756 Approved
0.7034 Intermediate Similarity NPD5240 Approved
0.7034 Intermediate Similarity NPD5237 Approved
0.7034 Intermediate Similarity NPD1752 Approved
0.7034 Intermediate Similarity NPD5236 Approved
0.7031 Intermediate Similarity NPD9567 Approved
0.7031 Intermediate Similarity NPD552 Approved
0.7031 Intermediate Similarity NPD553 Approved
0.703 Intermediate Similarity NPD227 Approved
0.703 Intermediate Similarity NPD225 Approved
0.7029 Intermediate Similarity NPD3887 Approved
0.7023 Intermediate Similarity NPD2313 Discontinued
0.7023 Intermediate Similarity NPD3764 Approved
0.7018 Intermediate Similarity NPD1932 Approved
0.7016 Intermediate Similarity NPD5585 Approved
0.7007 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD2607 Approved
0.6992 Remote Similarity NPD1899 Clinical (unspecified phase)
0.6984 Remote Similarity NPD4806 Approved
0.6984 Remote Similarity NPD4807 Approved
0.6983 Remote Similarity NPD5048 Discontinued
0.6977 Remote Similarity NPD2798 Approved
0.6975 Remote Similarity NPD2201 Approved
0.6975 Remote Similarity NPD4141 Clinical (unspecified phase)
0.6972 Remote Similarity NPD7609 Phase 3
0.6963 Remote Similarity NPD2799 Discontinued
0.696 Remote Similarity NPD5305 Approved
0.696 Remote Similarity NPD5306 Approved
0.6957 Remote Similarity NPD5738 Clinical (unspecified phase)
0.6953 Remote Similarity NPD1876 Approved
0.695 Remote Similarity NPD6273 Approved
0.6935 Remote Similarity NPD1894 Discontinued
0.693 Remote Similarity NPD2550 Approved
0.693 Remote Similarity NPD2553 Approved
0.693 Remote Similarity NPD2555 Approved
0.693 Remote Similarity NPD2549 Approved
0.693 Remote Similarity NPD2552 Approved
0.693 Remote Similarity NPD2558 Approved
0.6923 Remote Similarity NPD6685 Approved
0.6917 Remote Similarity NPD969 Suspended
0.6912 Remote Similarity NPD2935 Discontinued
0.6909 Remote Similarity NPD7631 Approved
0.6905 Remote Similarity NPD3496 Discontinued
0.6905 Remote Similarity NPD4136 Approved
0.6905 Remote Similarity NPD4106 Approved
0.6905 Remote Similarity NPD4135 Approved
0.6899 Remote Similarity NPD3266 Approved
0.6899 Remote Similarity NPD1203 Approved
0.6899 Remote Similarity NPD3267 Approved
0.6899 Remote Similarity NPD2797 Approved
0.6894 Remote Similarity NPD6798 Discontinued
0.6891 Remote Similarity NPD1317 Discontinued
0.6887 Remote Similarity NPD5734 Clinical (unspecified phase)
0.6885 Remote Similarity NPD4766 Approved
0.688 Remote Similarity NPD5691 Approved
0.688 Remote Similarity NPD4196 Clinical (unspecified phase)
0.6875 Remote Similarity NPD5157 Phase 1
0.6875 Remote Similarity NPD5158 Clinical (unspecified phase)
0.6875 Remote Similarity NPD5159 Phase 2
0.687 Remote Similarity NPD4188 Approved
0.687 Remote Similarity NPD4189 Approved
0.6866 Remote Similarity NPD6355 Discontinued
0.6866 Remote Similarity NPD1933 Approved
0.6864 Remote Similarity NPD9265 Clinical (unspecified phase)
0.6864 Remote Similarity NPD9267 Approved
0.6864 Remote Similarity NPD9263 Approved
0.6864 Remote Similarity NPD9264 Approved
0.6861 Remote Similarity NPD2343 Clinical (unspecified phase)
0.6861 Remote Similarity NPD7611 Approved
0.686 Remote Similarity NPD5535 Approved
0.6847 Remote Similarity NPD1563 Approved
0.6838 Remote Similarity NPD4308 Phase 3
0.6835 Remote Similarity NPD8166 Discontinued
0.6835 Remote Similarity NPD7003 Approved
0.6827 Remote Similarity NPD942 Approved
0.6827 Remote Similarity NPD226 Approved
0.6825 Remote Similarity NPD1778 Approved
0.6825 Remote Similarity NPD17 Approved
0.6818 Remote Similarity NPD1239 Approved
0.6815 Remote Similarity NPD1654 Clinical (unspecified phase)
0.6814 Remote Similarity NPD3495 Discontinued
0.6812 Remote Similarity NPD6414 Clinical (unspecified phase)
0.6807 Remote Similarity NPD9266 Approved
0.6807 Remote Similarity NPD74 Approved
0.6807 Remote Similarity NPD2329 Discontinued
0.6806 Remote Similarity NPD7458 Discontinued
0.6803 Remote Similarity NPD2650 Approved
0.6803 Remote Similarity NPD2652 Approved
0.6791 Remote Similarity NPD3142 Approved
0.6791 Remote Similarity NPD2979 Phase 3
0.6791 Remote Similarity NPD3140 Approved
0.6788 Remote Similarity NPD2796 Approved
0.678 Remote Similarity NPD5704 Approved
0.678 Remote Similarity NPD5705 Approved
0.678 Remote Similarity NPD5706 Approved
0.6777 Remote Similarity NPD9508 Approved
0.6774 Remote Similarity NPD694 Clinical (unspecified phase)
0.6774 Remote Similarity NPD4574 Approved
0.6774 Remote Similarity NPD4576 Approved
0.6772 Remote Similarity NPD3847 Discontinued
0.6767 Remote Similarity NPD6859 Clinical (unspecified phase)
0.6767 Remote Similarity NPD3268 Approved
0.6765 Remote Similarity NPD2670 Approved
0.6759 Remote Similarity NPD6599 Discontinued
0.6752 Remote Similarity NPD3047 Approved
0.6752 Remote Similarity NPD3046 Approved
0.6752 Remote Similarity NPD3048 Approved
0.6746 Remote Similarity NPD4105 Approved
0.6746 Remote Similarity NPD4102 Approved
0.6744 Remote Similarity NPD4359 Approved

Structure

External Identifiers

PubChem CID   46210896
ChEMBL   CHEMBL1094940
ZINC  

Physicochemical Properties

Molecular Weight:  384.23
ALogP:  2.5619
MLogP:  3.66
XLogP:  6.842
# Rotatable Bonds:  10
Polar Surface Area:  52.6
# H-Bond Aceptor:  4
# H-Bond Donor:  0
# Rings:  2
# Heavy Atoms:  28

Download Data

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Structure MOL file  
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Biological Activities  
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