Natural Product: NPC314293

Natural Product ID:  NPC314293
Common Name:   Clethramycin
IUPAC Name:   (2E,4E,6E,10E,16E,18E,20E,22E,24E,26E,36E,44E,50E)-58-(diaminomethylideneamino)-13,15,33,35,39,41,43,47,49,53,55-undecahydroxy-2,12,14,30-tetramethyl-31-oxo-29-sulfooxyoctapentaconta-2,4,6,10,16,18,20,22,24,26,36,44,50-tridecaenoic acid
Synonyms:   Clethramycin
Molecular Formula:   C63H99N3O18S
Standard InCHIKey:  OQRILZSNZMAVTK-MZAOIEPISA-N
Standard InCHI:  InChI=1S/C63H99N3O18S/c1-45(27-19-15-11-10-12-16-20-28-46(2)62(79)80)61(78)48(4)58(76)36-21-17-13-8-6-5-7-9-14-18-22-37-60(84-85(81,82)83)47(3)59(77)44-57(75)43-54(72)34-25-33-53(71)42-56(74)41-52(70)32-24-31-50(68)39-49(67)29-23-30-51(69)40-55(73)35-26-38-66-63(64)65/h5-10,12-14,16-25,27-29,32,34,36,45,47-58,60-61,67-76,78H,11,15,26,30-31,33,35,37-44H2,1-4H3,(H,79,80)(H4,64,65,66)(H,81,82,83)/b7-5+,8-6+,12-10+,14-9+,17-13+,20-16+,22-18+,27-19+,29-23+,32-24+,34-25+,36-21+,46-28+
Canonical SMILES:  OC(CC(CC(=O)C(C(OS(=O)(=O)O)C/C=C/C=C/C=C/C=C/C=C/C=C/C(C(C(C(/C=C/CC/C=C/C=C/C=C(/C(=O)O)C)C)O)C)O)C)O)/C=C/CC(CC(CC(/C=C/CC(CC(/C=C/CC(CC(CCCNC(=N)N)O)O)O)O)O)O)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO13391.63 Streptomyces hygroscopicus tp-a0623 Subspecies Streptomycetaceae Bacteria StreptomeDB*
NPO10997.1 Streptomyces mediocidicus atcc 23936 Subspecies Streptomycetaceae Bacteria StreptomeDB*
NPO9685.5 Streptomyces violaceusniger dsm 4137 Subspecies Streptomycetaceae Bacteria StreptomeDB*

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT20 Organism Candida albicans Candida albicans MIC = 4 ug/ml 17315962
NPT188 Organism Candida parapsilosis Candida parapsilosis MIC = 16 ug/ml 17315962
NPT186 Organism Candida tropicalis Candida tropicalis MIC = 16 ug/ml 17315962
NPT186 Organism Candida tropicalis Candida tropicalis MIC = 8 ug/ml 17315962
NPT187 Organism Issatchenkia orientalis Pichia kudriavzevii MIC = 2 ug/ml 17315962
NPT87 Organism Aspergillus fumigatus Aspergillus fumigatus MIC > 128 ug/ml 17315962
NPT21 Organism Aspergillus niger Aspergillus niger MIC = 4 ug/ml 17315962
NPT3153 Organism Kluyveromyces marxianus Kluyveromyces marxianus MIC = 2 ug/ml 17315962
NPT820 Organism Clavispora lusitaniae Clavispora lusitaniae MIC = 4 ug/ml 17315962
NPT3613 Organism Candida rugosa Candida rugosa MIC = 4 ug/ml 17315962

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC314293 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.8829 High Similarity NPC315531
0.8596 High Similarity NPC477997
0.8378 Intermediate Similarity NPC316250
0.768 Intermediate Similarity NPC314482
0.7069 Intermediate Similarity NPC5418
0.6949 Remote Similarity NPC165332
0.6949 Remote Similarity NPC180722
0.6949 Remote Similarity NPC195645
0.6905 Remote Similarity NPC21713
0.6905 Remote Similarity NPC475608
0.6769 Remote Similarity NPC475642
0.6696 Remote Similarity NPC477959
0.6691 Remote Similarity NPC314361
0.6615 Remote Similarity NPC471645
0.6589 Remote Similarity NPC469865
0.6567 Remote Similarity NPC475383
0.6567 Remote Similarity NPC156379
0.6552 Remote Similarity NPC86005
0.6541 Remote Similarity NPC241050
0.6525 Remote Similarity NPC313670
0.6508 Remote Similarity NPC471259
0.6471 Remote Similarity NPC315783
0.6449 Remote Similarity NPC473249
0.6418 Remote Similarity NPC313802
0.6418 Remote Similarity NPC477515
0.6418 Remote Similarity NPC67917
0.6418 Remote Similarity NPC314268
0.6393 Remote Similarity NPC471257
0.6391 Remote Similarity NPC316325
0.6391 Remote Similarity NPC6531
0.6357 Remote Similarity NPC473578
0.635 Remote Similarity NPC314629
0.6328 Remote Similarity NPC251330
0.6316 Remote Similarity NPC30196
0.6279 Remote Similarity NPC475150
0.627 Remote Similarity NPC471258
0.6269 Remote Similarity NPC477121
0.625 Remote Similarity NPC472615
0.6241 Remote Similarity NPC315387
0.6241 Remote Similarity NPC316205
0.6231 Remote Similarity NPC133729
0.6212 Remote Similarity NPC1111
0.6212 Remote Similarity NPC261750
0.621 Remote Similarity NPC476344
0.6186 Remote Similarity NPC315395
0.6186 Remote Similarity NPC316426
0.6179 Remote Similarity NPC150041
0.6176 Remote Similarity NPC471261
0.6174 Remote Similarity NPC315731
0.6172 Remote Similarity NPC472616
0.617 Remote Similarity NPC477793
0.617 Remote Similarity NPC329919
0.616 Remote Similarity NPC161855
0.6143 Remote Similarity NPC471263
0.6136 Remote Similarity NPC147238
0.6129 Remote Similarity NPC473291
0.6124 Remote Similarity NPC271269
0.609 Remote Similarity NPC60432
0.6087 Remote Similarity NPC315915
0.608 Remote Similarity NPC475438
0.6071 Remote Similarity NPC313342
0.6071 Remote Similarity NPC313333
0.6071 Remote Similarity NPC314451
0.6071 Remote Similarity NPC314512
0.6068 Remote Similarity NPC16488
0.6066 Remote Similarity NPC314500
0.605 Remote Similarity NPC164393
0.6042 Remote Similarity NPC261730
0.6042 Remote Similarity NPC316401
0.6034 Remote Similarity NPC184208
0.6034 Remote Similarity NPC8538
0.6031 Remote Similarity NPC307903
0.6031 Remote Similarity NPC193765
0.6031 Remote Similarity NPC140251
0.6016 Remote Similarity NPC72401
0.6016 Remote Similarity NPC325339
0.6 Remote Similarity NPC316133
0.6 Remote Similarity NPC154601
0.6 Remote Similarity NPC318445
0.5986 Remote Similarity NPC314282
0.5985 Remote Similarity NPC156336
0.5985 Remote Similarity NPC200412
0.5985 Remote Similarity NPC120599
0.5984 Remote Similarity NPC473224
0.597 Remote Similarity NPC275100
0.597 Remote Similarity NPC474497
0.5969 Remote Similarity NPC472755
0.5969 Remote Similarity NPC474563
0.5952 Remote Similarity NPC40812
0.5942 Remote Similarity NPC35037
0.594 Remote Similarity NPC476290
0.5935 Remote Similarity NPC142838
0.5929 Remote Similarity NPC471262
0.5924 Remote Similarity NPC300443
0.5923 Remote Similarity NPC477000
0.5923 Remote Similarity NPC477001
0.5921 Remote Similarity NPC142761
0.592 Remote Similarity NPC314009
0.592 Remote Similarity NPC54905
0.5918 Remote Similarity NPC471256
0.5917 Remote Similarity NPC122502
0.5913 Remote Similarity NPC192006
0.5912 Remote Similarity NPC27413
0.5912 Remote Similarity NPC271621
0.5912 Remote Similarity NPC59751
0.5906 Remote Similarity NPC308567
0.5906 Remote Similarity NPC261377
0.5906 Remote Similarity NPC255592
0.5906 Remote Similarity NPC234542
0.5902 Remote Similarity NPC256902
0.5902 Remote Similarity NPC118193
0.5902 Remote Similarity NPC304455
0.5899 Remote Similarity NPC477140
0.5899 Remote Similarity NPC477143
0.5891 Remote Similarity NPC472754
0.5891 Remote Similarity NPC473596
0.5887 Remote Similarity NPC109406
0.5887 Remote Similarity NPC159092
0.5887 Remote Similarity NPC476049
0.5882 Remote Similarity NPC50694
0.5878 Remote Similarity NPC476740
0.5878 Remote Similarity NPC236644
0.5878 Remote Similarity NPC476738
0.5873 Remote Similarity NPC475503
0.5873 Remote Similarity NPC175614
0.587 Remote Similarity NPC296361
0.5868 Remote Similarity NPC471738
0.5865 Remote Similarity NPC298484
0.5854 Remote Similarity NPC71533
0.5854 Remote Similarity NPC106510
0.5852 Remote Similarity NPC476269
0.5852 Remote Similarity NPC66108
0.5846 Remote Similarity NPC471260
0.5846 Remote Similarity NPC475367
0.5846 Remote Similarity NPC474581
0.5846 Remote Similarity NPC473816
0.5846 Remote Similarity NPC55336
0.5845 Remote Similarity NPC469494
0.5844 Remote Similarity NPC316249
0.5844 Remote Similarity NPC477519
0.5833 Remote Similarity NPC242233
0.5833 Remote Similarity NPC137033
0.5833 Remote Similarity NPC261380
0.5833 Remote Similarity NPC315426
0.5822 Remote Similarity NPC120335
0.5821 Remote Similarity NPC196073
0.5821 Remote Similarity NPC195435
0.582 Remote Similarity NPC201046
0.5814 Remote Similarity NPC472753
0.5814 Remote Similarity NPC469851
0.5806 Remote Similarity NPC206679
0.5806 Remote Similarity NPC476075
0.5806 Remote Similarity NPC300312
0.5806 Remote Similarity NPC261607
0.5806 Remote Similarity NPC471324
0.5806 Remote Similarity NPC111114
0.5806 Remote Similarity NPC476084
0.5806 Remote Similarity NPC114172
0.5804 Remote Similarity NPC309525
0.5802 Remote Similarity NPC74035
0.5798 Remote Similarity NPC69469
0.5797 Remote Similarity NPC201968
0.5794 Remote Similarity NPC471142
0.5794 Remote Similarity NPC36954
0.5794 Remote Similarity NPC272050
0.5794 Remote Similarity NPC300710
0.5789 Remote Similarity NPC473807
0.5789 Remote Similarity NPC122471
0.5785 Remote Similarity NPC258824
0.5783 Remote Similarity NPC63040
0.5781 Remote Similarity NPC83895
0.5781 Remote Similarity NPC187761
0.5781 Remote Similarity NPC132931
0.5781 Remote Similarity NPC141191
0.5781 Remote Similarity NPC475653
0.5772 Remote Similarity NPC295312
0.5772 Remote Similarity NPC212598
0.5769 Remote Similarity NPC149371
0.576 Remote Similarity NPC162205
0.576 Remote Similarity NPC295204
0.576 Remote Similarity NPC273579
0.576 Remote Similarity NPC288240
0.5758 Remote Similarity NPC210377
0.5758 Remote Similarity NPC469852
0.5758 Remote Similarity NPC5719
0.5758 Remote Similarity NPC217804
0.5758 Remote Similarity NPC473252
0.5758 Remote Similarity NPC22883
0.575 Remote Similarity NPC219966
0.5748 Remote Similarity NPC255410
0.5748 Remote Similarity NPC476315
0.5748 Remote Similarity NPC230800
0.5745 Remote Similarity NPC469515
0.5739 Remote Similarity NPC469880
0.5738 Remote Similarity NPC199382
0.5736 Remote Similarity NPC316730
0.5736 Remote Similarity NPC288876
0.5736 Remote Similarity NPC475053
0.5735 Remote Similarity NPC76660
0.5735 Remote Similarity NPC276995

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC314293 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.6949 Remote Similarity NPD7839 Suspended
0.6519 Remote Similarity NPD7624 Clinical (unspecified phase)
0.6519 Remote Similarity NPD7623 Phase 3
0.6471 Remote Similarity NPD7983 Approved
0.6471 Remote Similarity NPD7829 Approved
0.6471 Remote Similarity NPD7830 Approved
0.6449 Remote Similarity NPD7747 Phase 1
0.6449 Remote Similarity NPD7746 Phase 1
0.6444 Remote Similarity NPD8444 Approved
0.6444 Remote Similarity NPD7739 Clinical (unspecified phase)
0.6391 Remote Similarity NPD7500 Approved
0.6222 Remote Similarity NPD7641 Discontinued
0.6148 Remote Similarity NPD5778 Approved
0.6148 Remote Similarity NPD5779 Approved
0.6143 Remote Similarity NPD8273 Phase 1
0.6143 Remote Similarity NPD4816 Clinical (unspecified phase)
0.6136 Remote Similarity NPD7116 Clinical (unspecified phase)
0.6071 Remote Similarity NPD8342 Approved
0.6071 Remote Similarity NPD8299 Approved
0.6071 Remote Similarity NPD8340 Approved
0.6071 Remote Similarity NPD8341 Approved
0.6 Remote Similarity NPD7642 Approved
0.5986 Remote Similarity NPD8448 Approved
0.5972 Remote Similarity NPD8391 Approved
0.5972 Remote Similarity NPD8390 Approved
0.5972 Remote Similarity NPD8392 Approved
0.5966 Remote Similarity NPD5363 Approved
0.5915 Remote Similarity NPD8451 Approved
0.5899 Remote Similarity NPD7299 Clinical (unspecified phase)
0.5854 Remote Similarity NPD7838 Discovery
0.5821 Remote Similarity NPD6421 Discontinued
0.5785 Remote Similarity NPD5786 Approved
0.5776 Remote Similarity NPD3732 Approved
0.5753 Remote Similarity NPD6914 Discontinued
0.5726 Remote Similarity NPD5785 Approved
0.5714 Remote Similarity NPD4269 Approved
0.5714 Remote Similarity NPD4270 Approved
0.5659 Remote Similarity NPD8029 Clinical (unspecified phase)
0.5645 Remote Similarity NPD6101 Approved
0.5645 Remote Similarity NPD5764 Clinical (unspecified phase)
0.5612 Remote Similarity NPD869 Approved
0.56 Remote Similarity NPD6698 Approved
0.56 Remote Similarity NPD46 Approved
0.56 Remote Similarity NPD8415 Approved

Structure

External Identifiers

PubChem CID   11094420
ChEMBL   CHEMBL374857
ZINC  

Physicochemical Properties

Molecular Weight:  1217.66
ALogP:  -0.4969
MLogP:  5.97
XLogP:  3.656
# Rotatable Bonds:  66
Polar Surface Area:  410.78
# H-Bond Aceptor:  21
# H-Bond Donor:  16
# Rings:  0
# Heavy Atoms:  85

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