Natural Product: NPC297342

Natural Product ID:  NPC297342
Common Name:   Sibiricose A6
IUPAC Name:   [(2S,3S,4R,5R)-4-hydroxy-2,5-bis(hydroxymethyl)-2-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxolan-3-yl] (E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate
Synonyms:  
Molecular Formula:   C23H32O15
Standard InCHIKey:  WTCVROXOIQEIRC-IBVGEFGBSA-N
Standard InCHI:  InChI=1S/C23H32O15/c1-33-11-5-10(6-12(34-2)16(11)28)3-4-15(27)36-21-18(30)14(8-25)37-23(21,9-26)38-22-20(32)19(31)17(29)13(7-24)35-22/h3-6,13-14,17-22,24-26,28-32H,7-9H2,1-2H3/b4-3+/t13-,14-,17-,18-,19+,20-,21+,22-,23+/m1/s1
Canonical SMILES:  OC[C@H]1O[C@@]([C@H]([C@@H]1O)OC(=O)/C=C/c1cc(OC)c(c(c1)OC)O)(CO)O[C@H]1O[C@H](CO)[C@H]([C@@H]([C@H]1O)O)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO7539 Raphanus sativus Species Brassicaceae Eukaryota Seeds PMID[25466198]
NPO27260 Polygala tenuifolia Species Polygalaceae Eukaryota TCMID*
NPO21485 Polygala sibirica Species Polygalaceae Eukaryota TCMID*

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT2 Others Unspecified IC50 = 37400 nM 25466198
NPT2 Others Unspecified Inhibition = 15 % 25466198
NPT81 Cell Line A549 Homo sapiens IC50 = 23950 nM 25466198
NPT146 Cell Line SK-OV-3 Homo sapiens IC50 = 20500 nM 25466198
NPT147 Cell Line SK-MEL-2 Homo sapiens IC50 = 23880 nM 25466198
NPT148 Cell Line HCT-15 Homo sapiens IC50 = 26990 nM 25466198
NPT1 Others Radical scavenging activity IC50 = 78.2 ug/ml 25466198

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC297342 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9645 High Similarity NPC283839
0.9645 High Similarity NPC90896
0.9632 High Similarity NPC226005
0.9485 High Similarity NPC157554
0.9444 High Similarity NPC472611
0.9444 High Similarity NPC289967
0.9444 High Similarity NPC472612
0.9429 High Similarity NPC110063
0.9416 High Similarity NPC195196
0.9371 High Similarity NPC106138
0.9362 High Similarity NPC262182
0.9362 High Similarity NPC83743
0.9362 High Similarity NPC287615
0.9362 High Similarity NPC216819
0.9348 High Similarity NPC100389
0.9301 High Similarity NPC478237
0.9265 High Similarity NPC132895
0.9203 High Similarity NPC37468
0.9203 High Similarity NPC186418
0.9197 High Similarity NPC471883
0.9167 High Similarity NPC261122
0.9167 High Similarity NPC28651
0.9167 High Similarity NPC300262
0.9167 High Similarity NPC199311
0.9167 High Similarity NPC210611
0.9167 High Similarity NPC80732
0.9167 High Similarity NPC215095
0.9167 High Similarity NPC201148
0.9167 High Similarity NPC192763
0.9167 High Similarity NPC3460
0.9149 High Similarity NPC157816
0.9149 High Similarity NPC140502
0.9143 High Similarity NPC202700
0.9143 High Similarity NPC210478
0.913 High Similarity NPC185778
0.9124 High Similarity NPC254398
0.9118 High Similarity NPC219677
0.911 High Similarity NPC213197
0.9097 High Similarity NPC41844
0.9091 High Similarity NPC252292
0.9091 High Similarity NPC34587
0.9091 High Similarity NPC476382
0.9091 High Similarity NPC100998
0.9091 High Similarity NPC34927
0.9085 High Similarity NPC478239
0.9058 High Similarity NPC107478
0.9051 High Similarity NPC473924
0.9051 High Similarity NPC470270
0.9051 High Similarity NPC252833
0.9041 High Similarity NPC470934
0.9041 High Similarity NPC188393
0.9028 High Similarity NPC199928
0.9028 High Similarity NPC476865
0.8986 High Similarity NPC49074
0.8986 High Similarity NPC6836
0.898 High Similarity NPC85192
0.898 High Similarity NPC125823
0.898 High Similarity NPC7145
0.898 High Similarity NPC143480
0.8973 High Similarity NPC206264
0.8973 High Similarity NPC313334
0.8973 High Similarity NPC212670
0.8971 High Similarity NPC477294
0.8971 High Similarity NPC477293
0.8971 High Similarity NPC48315
0.8971 High Similarity NPC229784
0.8971 High Similarity NPC307110
0.8966 High Similarity NPC232992
0.8958 High Similarity NPC476869
0.8958 High Similarity NPC476864
0.8958 High Similarity NPC476866
0.8958 High Similarity NPC476868
0.8944 High Similarity NPC186406
0.8936 High Similarity NPC212770
0.8936 High Similarity NPC98777
0.8929 High Similarity NPC164857
0.8921 High Similarity NPC470881
0.8919 High Similarity NPC478268
0.8913 High Similarity NPC162093
0.8913 High Similarity NPC473285
0.8904 High Similarity NPC96294
0.8904 High Similarity NPC93924
0.8897 High Similarity NPC212890
0.8897 High Similarity NPC109275
0.8897 High Similarity NPC232880
0.8889 High Similarity NPC476867
0.8889 High Similarity NPC118385
0.8889 High Similarity NPC472713
0.8889 High Similarity NPC232228
0.8889 High Similarity NPC292443
0.8889 High Similarity NPC473046
0.8889 High Similarity NPC472712
0.8889 High Similarity NPC187774
0.8881 High Similarity NPC469559
0.8865 High Similarity NPC59324
0.8865 High Similarity NPC124149
0.8865 High Similarity NPC65530
0.8859 High Similarity NPC150442
0.8857 High Similarity NPC470236
0.8857 High Similarity NPC55040
0.8851 High Similarity NPC269914
0.8851 High Similarity NPC478249
0.8844 High Similarity NPC259347
0.8844 High Similarity NPC471062
0.8844 High Similarity NPC476386
0.8844 High Similarity NPC94871
0.8844 High Similarity NPC478242
0.8844 High Similarity NPC306890
0.8844 High Similarity NPC476398
0.8844 High Similarity NPC470933
0.8844 High Similarity NPC473427
0.8841 High Similarity NPC248307
0.8841 High Similarity NPC65942
0.8836 High Similarity NPC52740
0.8836 High Similarity NPC39657
0.8828 High Similarity NPC477702
0.8824 High Similarity NPC476873
0.8803 High Similarity NPC171134
0.8803 High Similarity NPC321184
0.8803 High Similarity NPC321638
0.8803 High Similarity NPC328273
0.8803 High Similarity NPC220942
0.8794 High Similarity NPC242028
0.8794 High Similarity NPC203230
0.8794 High Similarity NPC470572
0.8792 High Similarity NPC53587
0.8792 High Similarity NPC203664
0.8792 High Similarity NPC169404
0.8792 High Similarity NPC176186
0.8792 High Similarity NPC470264
0.8786 High Similarity NPC13745
0.8786 High Similarity NPC48863
0.8786 High Similarity NPC35731
0.8786 High Similarity NPC251981
0.8786 High Similarity NPC135127
0.8784 High Similarity NPC257970
0.8784 High Similarity NPC114740
0.8784 High Similarity NPC470927
0.8777 High Similarity NPC299144
0.8776 High Similarity NPC102934
0.8776 High Similarity NPC252402
0.875 High Similarity NPC472860
0.875 High Similarity NPC472714
0.875 High Similarity NPC475084
0.875 High Similarity NPC189115
0.875 High Similarity NPC5262
0.8742 High Similarity NPC476065
0.8733 High Similarity NPC105827
0.8733 High Similarity NPC246893
0.8733 High Similarity NPC310661
0.8732 High Similarity NPC476376
0.8723 High Similarity NPC476870
0.8718 High Similarity NPC59516
0.8716 High Similarity NPC55158
0.8716 High Similarity NPC286235
0.8716 High Similarity NPC51328
0.8714 High Similarity NPC25821
0.8714 High Similarity NPC215833
0.8714 High Similarity NPC69513
0.8699 High Similarity NPC475096
0.8699 High Similarity NPC476450
0.8696 High Similarity NPC470633
0.8696 High Similarity NPC248355
0.8696 High Similarity NPC228769
0.8693 High Similarity NPC289811
0.8693 High Similarity NPC215400
0.8693 High Similarity NPC160780
0.8693 High Similarity NPC230531
0.8686 High Similarity NPC156692
0.8686 High Similarity NPC471882
0.8686 High Similarity NPC173150
0.8686 High Similarity NPC45224
0.8686 High Similarity NPC471881
0.8686 High Similarity NPC35288
0.8684 High Similarity NPC11411
0.8681 High Similarity NPC134405
0.8681 High Similarity NPC472711
0.8681 High Similarity NPC469661
0.8681 High Similarity NPC476385
0.8676 High Similarity NPC300326
0.8676 High Similarity NPC27352
0.8676 High Similarity NPC58279
0.8671 High Similarity NPC197316
0.8671 High Similarity NPC81515
0.8671 High Similarity NPC64141
0.8671 High Similarity NPC472350
0.8671 High Similarity NPC476383
0.8671 High Similarity NPC68092
0.8671 High Similarity NPC89105
0.8667 High Similarity NPC476352
0.8667 High Similarity NPC302610
0.8667 High Similarity NPC215060
0.8662 High Similarity NPC177035
0.8662 High Similarity NPC52277
0.8662 High Similarity NPC25695
0.8662 High Similarity NPC172818
0.8662 High Similarity NPC199459
0.8662 High Similarity NPC471719
0.8658 High Similarity NPC147224
0.8658 High Similarity NPC476871

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC297342 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8973 High Similarity NPD1653 Approved
0.8671 High Similarity NPD7266 Discontinued
0.8298 Intermediate Similarity NPD3027 Phase 3
0.8199 Intermediate Similarity NPD7228 Approved
0.8101 Intermediate Similarity NPD6234 Discontinued
0.8086 Intermediate Similarity NPD3818 Discontinued
0.8037 Intermediate Similarity NPD7054 Approved
0.8013 Intermediate Similarity NPD37 Approved
0.7988 Intermediate Similarity NPD7472 Approved
0.7988 Intermediate Similarity NPD7074 Phase 3
0.7975 Intermediate Similarity NPD4965 Approved
0.7975 Intermediate Similarity NPD4967 Phase 2
0.7975 Intermediate Similarity NPD4966 Approved
0.7899 Intermediate Similarity NPD1357 Approved
0.7892 Intermediate Similarity NPD7685 Pre-registration
0.7877 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7877 Intermediate Similarity NPD1613 Approved
0.7844 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7806 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7784 Intermediate Similarity NPD7251 Discontinued
0.775 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7746 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.7738 Intermediate Similarity NPD7808 Phase 3
0.773 Intermediate Similarity NPD1091 Approved
0.773 Intermediate Similarity NPD3705 Approved
0.7727 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7725 Intermediate Similarity NPD6797 Phase 2
0.7703 Intermediate Similarity NPD230 Phase 1
0.7679 Intermediate Similarity NPD6559 Discontinued
0.7679 Intermediate Similarity NPD7240 Approved
0.7669 Intermediate Similarity NPD7199 Phase 2
0.7603 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7602 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7597 Intermediate Similarity NPD6190 Approved
0.7593 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.7562 Intermediate Similarity NPD1934 Approved
0.7534 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7531 Intermediate Similarity NPD3882 Suspended
0.75 Intermediate Similarity NPD2983 Phase 2
0.75 Intermediate Similarity NPD2982 Phase 2
0.747 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7468 Intermediate Similarity NPD1652 Phase 2
0.7431 Intermediate Similarity NPD2981 Phase 2
0.7425 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7425 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7425 Intermediate Similarity NPD6166 Phase 2
0.7407 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.7389 Intermediate Similarity NPD4357 Discontinued
0.7362 Intermediate Similarity NPD3817 Phase 2
0.7361 Intermediate Similarity NPD422 Phase 1
0.7355 Intermediate Similarity NPD6674 Discontinued
0.7333 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7319 Intermediate Similarity NPD228 Approved
0.7314 Intermediate Similarity NPD6841 Approved
0.7314 Intermediate Similarity NPD6842 Approved
0.7314 Intermediate Similarity NPD6843 Phase 3
0.731 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7301 Intermediate Similarity NPD2801 Approved
0.7297 Intermediate Similarity NPD3018 Phase 2
0.7294 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.7294 Intermediate Similarity NPD5844 Phase 1
0.7279 Intermediate Similarity NPD1358 Approved
0.7273 Intermediate Similarity NPD7075 Discontinued
0.7268 Intermediate Similarity NPD7680 Approved
0.7256 Intermediate Similarity NPD5353 Approved
0.7254 Intermediate Similarity NPD5536 Phase 2
0.7241 Intermediate Similarity NPD7090 Clinical (unspecified phase)
0.7237 Intermediate Similarity NPD5124 Phase 1
0.7237 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.7222 Intermediate Similarity NPD4380 Phase 2
0.7197 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7195 Intermediate Similarity NPD1465 Phase 2
0.7195 Intermediate Similarity NPD2978 Approved
0.7195 Intermediate Similarity NPD2977 Approved
0.7181 Intermediate Similarity NPD9494 Approved
0.717 Intermediate Similarity NPD5297 Approved
0.7152 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7101 Intermediate Similarity NPD6232 Discontinued
0.7091 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.7091 Intermediate Similarity NPD8455 Phase 2
0.7089 Intermediate Similarity NPD4628 Phase 3
0.7089 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.708 Intermediate Similarity NPD3134 Approved
0.7078 Intermediate Similarity NPD2492 Phase 1
0.7078 Intermediate Similarity NPD6653 Approved
0.7076 Intermediate Similarity NPD7473 Discontinued
0.7066 Intermediate Similarity NPD7975 Clinical (unspecified phase)
0.7063 Intermediate Similarity NPD1511 Approved
0.7048 Intermediate Similarity NPD5402 Approved
0.7041 Intermediate Similarity NPD8127 Discontinued
0.702 Intermediate Similarity NPD4908 Phase 1
0.7013 Intermediate Similarity NPD447 Suspended
0.7 Intermediate Similarity NPD5058 Phase 3
0.7 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.6994 Remote Similarity NPD3686 Approved
0.6994 Remote Similarity NPD3687 Approved
0.6988 Remote Similarity NPD7819 Suspended
0.6983 Remote Similarity NPD8397 Clinical (unspecified phase)
0.6982 Remote Similarity NPD5494 Approved
0.6975 Remote Similarity NPD1512 Approved
0.6962 Remote Similarity NPD970 Clinical (unspecified phase)
0.6959 Remote Similarity NPD9269 Phase 2
0.6957 Remote Similarity NPD6799 Approved
0.695 Remote Similarity NPD969 Suspended
0.6948 Remote Similarity NPD3619 Clinical (unspecified phase)
0.6948 Remote Similarity NPD4060 Phase 1
0.6948 Remote Similarity NPD3620 Phase 2
0.6946 Remote Similarity NPD6374 Clinical (unspecified phase)
0.6939 Remote Similarity NPD3496 Discontinued
0.6937 Remote Similarity NPD2219 Phase 1
0.6933 Remote Similarity NPD5403 Approved
0.6932 Remote Similarity NPD7549 Discontinued
0.6928 Remote Similarity NPD6801 Discontinued
0.6928 Remote Similarity NPD6410 Clinical (unspecified phase)
0.6928 Remote Similarity NPD4907 Clinical (unspecified phase)
0.6923 Remote Similarity NPD7097 Phase 1
0.6918 Remote Similarity NPD4237 Approved
0.6918 Remote Similarity NPD4236 Phase 3
0.6914 Remote Similarity NPD2533 Approved
0.6914 Remote Similarity NPD2532 Approved
0.6914 Remote Similarity NPD2534 Approved
0.6903 Remote Similarity NPD1933 Approved
0.6901 Remote Similarity NPD7843 Approved
0.6899 Remote Similarity NPD5763 Approved
0.6899 Remote Similarity NPD5762 Approved
0.6893 Remote Similarity NPD8312 Approved
0.6893 Remote Similarity NPD8313 Approved
0.6892 Remote Similarity NPD1610 Phase 2
0.6875 Remote Similarity NPD7157 Approved
0.6875 Remote Similarity NPD4109 Clinical (unspecified phase)
0.6875 Remote Similarity NPD4110 Phase 3
0.6871 Remote Similarity NPD7314 Clinical (unspecified phase)
0.6855 Remote Similarity NPD2424 Discontinued
0.6853 Remote Similarity NPD5283 Phase 1
0.6849 Remote Similarity NPD1548 Phase 1
0.6848 Remote Similarity NPD6055 Clinical (unspecified phase)
0.6842 Remote Similarity NPD2861 Phase 2
0.6839 Remote Similarity NPD3751 Discontinued
0.6835 Remote Similarity NPD2935 Discontinued
0.6835 Remote Similarity NPD1551 Phase 2
0.6824 Remote Similarity NPD919 Approved
0.681 Remote Similarity NPD5401 Approved
0.6807 Remote Similarity NPD4675 Approved
0.6807 Remote Similarity NPD4678 Approved
0.68 Remote Similarity NPD4749 Approved
0.6795 Remote Similarity NPD4340 Discontinued
0.6795 Remote Similarity NPD6355 Discontinued
0.6792 Remote Similarity NPD1375 Discontinued
0.6792 Remote Similarity NPD3540 Phase 1
0.6786 Remote Similarity NPD5773 Approved
0.6786 Remote Similarity NPD5563 Clinical (unspecified phase)
0.6786 Remote Similarity NPD5772 Approved
0.6776 Remote Similarity NPD6917 Clinical (unspecified phase)
0.6774 Remote Similarity NPD6233 Phase 2
0.677 Remote Similarity NPD3750 Approved
0.677 Remote Similarity NPD8166 Discontinued
0.6768 Remote Similarity NPD1940 Clinical (unspecified phase)
0.6766 Remote Similarity NPD6385 Approved
0.6766 Remote Similarity NPD6386 Approved
0.6766 Remote Similarity NPD7411 Suspended
0.6763 Remote Similarity NPD5242 Approved
0.6757 Remote Similarity NPD4626 Approved
0.6753 Remote Similarity NPD7095 Approved
0.675 Remote Similarity NPD1549 Phase 2
0.6738 Remote Similarity NPD2684 Approved
0.6735 Remote Similarity NPD9545 Approved
0.6731 Remote Similarity NPD1558 Phase 1
0.673 Remote Similarity NPD3539 Phase 1
0.6728 Remote Similarity NPD5307 Clinical (unspecified phase)
0.6719 Remote Similarity NPD8151 Discontinued
0.6709 Remote Similarity NPD4978 Clinical (unspecified phase)
0.6708 Remote Similarity NPD3060 Approved
0.6707 Remote Similarity NPD6599 Discontinued
0.6707 Remote Similarity NPD7028 Phase 2
0.6706 Remote Similarity NPD7768 Phase 2
0.6705 Remote Similarity NPD3787 Discontinued
0.6689 Remote Similarity NPD5691 Approved
0.6689 Remote Similarity NPD9268 Approved
0.6687 Remote Similarity NPD1550 Clinical (unspecified phase)
0.6687 Remote Similarity NPD1552 Clinical (unspecified phase)
0.6667 Remote Similarity NPD7615 Clinical (unspecified phase)
0.6667 Remote Similarity NPD291 Approved
0.6667 Remote Similarity NPD290 Approved
0.6667 Remote Similarity NPD5588 Approved
0.6667 Remote Similarity NPD1510 Phase 2
0.6647 Remote Similarity NPD3455 Phase 2
0.6647 Remote Similarity NPD8443 Clinical (unspecified phase)
0.6645 Remote Similarity NPD4625 Phase 3
0.6644 Remote Similarity NPD1778 Approved
0.6644 Remote Similarity NPD5126 Approved
0.6644 Remote Similarity NPD5125 Phase 3
0.6644 Remote Similarity NPD6671 Approved
0.6632 Remote Similarity NPD7435 Discontinued
0.6627 Remote Similarity NPD7945 Clinical (unspecified phase)
0.6624 Remote Similarity NPD4140 Approved
0.6624 Remote Similarity NPD1240 Approved
0.6606 Remote Similarity NPD7004 Clinical (unspecified phase)
0.6606 Remote Similarity NPD4378 Clinical (unspecified phase)
0.6605 Remote Similarity NPD5698 Clinical (unspecified phase)
0.6604 Remote Similarity NPD4538 Approved

Structure

External Identifiers

PubChem CID   6326021
ChEMBL   CHEMBL3581236
ZINC  

Physicochemical Properties

Molecular Weight:  548.17
ALogP:  -4.1441
MLogP:  2.34
XLogP:  -2.528
# Rotatable Bonds:  21
Polar Surface Area:  234.29
# H-Bond Aceptor:  12
# H-Bond Donor:  8
# Rings:  3
# Heavy Atoms:  38

Download Data

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