Natural Product: NPC255799

Natural Product ID:  NPC255799
Common Name:   Pedunculosumoside A
IUPAC Name:   7-[(2S,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-2-yl]oxy-5-hydroxy-3-(hydroxymethyl)-2-[3-hydroxy-5-(3-methylbut-2-enyl)-4-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyphenyl]chromen-4-one
Synonyms:   Pedunculosumoside A
Molecular Formula:   C39H50O22
Standard InCHIKey:  XWEFVEFGSLLUFG-LKAUHASFSA-N
Standard InCHI:  InChI=1S/C39H50O22/c1-13(2)3-4-14-5-15(6-19(45)35(14)60-37-32(53)29(50)26(47)21(10-41)57-37)34-17(9-40)25(46)24-18(44)7-16(8-20(24)56-34)55-39-36(31(52)28(49)23(12-43)59-39)61-38-33(54)30(51)27(48)22(11-42)58-38/h3,5-8,21-23,26-33,36-45,47-54H,4,9-12H2,1-2H3/t21-,22-,23-,26-,27-,28-,29+,30+,31+,32-,33-,36-,37+,38+,39-/m1/s1
Canonical SMILES:  OC[C@H]1O[C@@H](Oc2cc(O)c3c(c2)oc(c(c3=O)CO)c2cc(O)c(c(c2)CC=C(C)C)O[C@@H]2O[C@H](CO)[C@H]([C@@H]([C@H]2O)O)O)[C@@H]([C@H]([C@@H]1O)O)O[C@@H]1O[C@H](CO)[C@H]([C@@H]([C@H]1O)O)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO31176 Ophioglossum pedunculosum Species Ophioglossaceae Eukaryota Whole Plants PMID[21401115]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT963 Organism Hepatitis B virus Hepatitis B virus IC50 = 238000 nM 21401115
NPT2 Others Unspecified CC50 > 200000 nM 21401115

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC255799 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9877 High Similarity NPC25724
0.9756 High Similarity NPC208668
0.9697 High Similarity NPC198199
0.9695 High Similarity NPC180918
0.9695 High Similarity NPC256760
0.9634 High Similarity NPC177731
0.9634 High Similarity NPC79056
0.9634 High Similarity NPC105095
0.9634 High Similarity NPC44328
0.9634 High Similarity NPC78734
0.9634 High Similarity NPC150767
0.9634 High Similarity NPC218488
0.9632 High Similarity NPC477502
0.9581 High Similarity NPC120952
0.9581 High Similarity NPC89052
0.9581 High Similarity NPC251417
0.9573 High Similarity NPC105283
0.9573 High Similarity NPC195257
0.9573 High Similarity NPC86008
0.9573 High Similarity NPC293629
0.9573 High Similarity NPC209296
0.9573 High Similarity NPC43587
0.9524 High Similarity NPC192539
0.9521 High Similarity NPC219043
0.9521 High Similarity NPC14187
0.9521 High Similarity NPC292019
0.9521 High Similarity NPC202908
0.9521 High Similarity NPC122467
0.9521 High Similarity NPC48984
0.9515 High Similarity NPC231194
0.9515 High Similarity NPC51326
0.9509 High Similarity NPC15358
0.9471 High Similarity NPC148710
0.9461 High Similarity NPC476472
0.9461 High Similarity NPC16194
0.9461 High Similarity NPC294629
0.9461 High Similarity NPC294815
0.9461 High Similarity NPC473327
0.9461 High Similarity NPC220173
0.9461 High Similarity NPC19108
0.9461 High Similarity NPC102028
0.9461 High Similarity NPC142996
0.9455 High Similarity NPC227508
0.9451 High Similarity NPC236934
0.9451 High Similarity NPC5778
0.9451 High Similarity NPC115674
0.9451 High Similarity NPC210073
0.9451 High Similarity NPC8856
0.9448 High Similarity NPC222936
0.9448 High Similarity NPC284960
0.9401 High Similarity NPC239549
0.9401 High Similarity NPC236191
0.9401 High Similarity NPC204693
0.9401 High Similarity NPC51774
0.9398 High Similarity NPC285197
0.9398 High Similarity NPC52353
0.9398 High Similarity NPC67105
0.9394 High Similarity NPC229729
0.9394 High Similarity NPC275454
0.939 High Similarity NPC475366
0.939 High Similarity NPC22832
0.939 High Similarity NPC284277
0.939 High Similarity NPC311830
0.939 High Similarity NPC475497
0.9387 High Similarity NPC473043
0.936 High Similarity NPC64755
0.9357 High Similarity NPC49690
0.9357 High Similarity NPC318119
0.9349 High Similarity NPC241196
0.9349 High Similarity NPC475261
0.9349 High Similarity NPC173837
0.9341 High Similarity NPC156977
0.9341 High Similarity NPC261254
0.9341 High Similarity NPC203259
0.9341 High Similarity NPC471725
0.9341 High Similarity NPC471748
0.9341 High Similarity NPC176740
0.9341 High Similarity NPC301683
0.9341 High Similarity NPC3583
0.9341 High Similarity NPC26230
0.9341 High Similarity NPC134532
0.9341 High Similarity NPC267254
0.9341 High Similarity NPC155877
0.9341 High Similarity NPC60735
0.9341 High Similarity NPC33054
0.9341 High Similarity NPC259152
0.9337 High Similarity NPC61791
0.9337 High Similarity NPC229687
0.9329 High Similarity NPC88023
0.9329 High Similarity NPC191306
0.9329 High Similarity NPC19709
0.9329 High Similarity NPC257566
0.9329 High Similarity NPC270335
0.9329 High Similarity NPC309025
0.9329 High Similarity NPC29830
0.9329 High Similarity NPC243930
0.9329 High Similarity NPC124155
0.9306 High Similarity NPC473618
0.9302 High Similarity NPC295625
0.9302 High Similarity NPC470719
0.9302 High Similarity NPC473554
0.9298 High Similarity NPC321916
0.9298 High Similarity NPC132111
0.9294 High Similarity NPC110941
0.9294 High Similarity NPC473571
0.9294 High Similarity NPC470443
0.9294 High Similarity NPC473895
0.9294 High Similarity NPC473682
0.9294 High Similarity NPC470444
0.9294 High Similarity NPC241423
0.9294 High Similarity NPC126784
0.929 High Similarity NPC169733
0.929 High Similarity NPC471669
0.929 High Similarity NPC473862
0.929 High Similarity NPC89127
0.9281 High Similarity NPC156869
0.9281 High Similarity NPC21190
0.9281 High Similarity NPC293004
0.9281 High Similarity NPC254855
0.9281 High Similarity NPC136042
0.9281 High Similarity NPC29958
0.9281 High Similarity NPC255157
0.9281 High Similarity NPC67326
0.9281 High Similarity NPC22195
0.9281 High Similarity NPC224462
0.9281 High Similarity NPC194483
0.9281 High Similarity NPC259896
0.9281 High Similarity NPC183357
0.9281 High Similarity NPC95866
0.9277 High Similarity NPC325555
0.9277 High Similarity NPC265530
0.9277 High Similarity NPC45400
0.9277 High Similarity NPC226304
0.9268 High Similarity NPC189142
0.9268 High Similarity NPC127782
0.9268 High Similarity NPC475382
0.9268 High Similarity NPC190450
0.9268 High Similarity NPC300537
0.9268 High Similarity NPC77660
0.9268 High Similarity NPC44947
0.9264 High Similarity NPC110349
0.9249 High Similarity NPC179947
0.9244 High Similarity NPC470720
0.9244 High Similarity NPC470713
0.9244 High Similarity NPC470455
0.9244 High Similarity NPC460984
0.9244 High Similarity NPC275977
0.9244 High Similarity NPC470717
0.9244 High Similarity NPC223860
0.9244 High Similarity NPC249560
0.9244 High Similarity NPC21359
0.9244 High Similarity NPC470451
0.9244 High Similarity NPC25946
0.9235 High Similarity NPC168584
0.9231 High Similarity NPC472607
0.9231 High Similarity NPC108202
0.9226 High Similarity NPC288152
0.9226 High Similarity NPC9002
0.9226 High Similarity NPC307518
0.9226 High Similarity NPC475155
0.9226 High Similarity NPC257011
0.9226 High Similarity NPC137871
0.9226 High Similarity NPC205076
0.9226 High Similarity NPC235575
0.9226 High Similarity NPC48773
0.9222 High Similarity NPC45638
0.9222 High Similarity NPC58053
0.9222 High Similarity NPC203050
0.9222 High Similarity NPC472383
0.9222 High Similarity NPC95855
0.9222 High Similarity NPC170675
0.9222 High Similarity NPC225434
0.9222 High Similarity NPC112755
0.9222 High Similarity NPC186807
0.9222 High Similarity NPC5319
0.9222 High Similarity NPC226294
0.9222 High Similarity NPC475942
0.9222 High Similarity NPC120099
0.9222 High Similarity NPC477165
0.9222 High Similarity NPC183036
0.9222 High Similarity NPC270578
0.9222 High Similarity NPC471457
0.9222 High Similarity NPC201292
0.9222 High Similarity NPC52382
0.9222 High Similarity NPC223747
0.9222 High Similarity NPC210042
0.9222 High Similarity NPC93337
0.9222 High Similarity NPC105025
0.9222 High Similarity NPC472381
0.9222 High Similarity NPC469931
0.9222 High Similarity NPC219904
0.9217 High Similarity NPC99957
0.9217 High Similarity NPC181616
0.9217 High Similarity NPC197285
0.9217 High Similarity NPC113968
0.9217 High Similarity NPC277174
0.9217 High Similarity NPC70441
0.9217 High Similarity NPC73855
0.9217 High Similarity NPC135599
0.9217 High Similarity NPC328940

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC255799 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9634 High Similarity NPD7472 Approved
0.9634 High Similarity NPD7074 Phase 3
0.9573 High Similarity NPD7054 Approved
0.9461 High Similarity NPD7808 Phase 3
0.9401 High Similarity NPD7251 Discontinued
0.9341 High Similarity NPD6797 Phase 2
0.9222 High Similarity NPD7804 Clinical (unspecified phase)
0.9048 High Similarity NPD3818 Discontinued
0.8929 High Similarity NPD6167 Clinical (unspecified phase)
0.8929 High Similarity NPD6166 Phase 2
0.8929 High Similarity NPD6168 Clinical (unspecified phase)
0.8909 High Similarity NPD4381 Clinical (unspecified phase)
0.8895 High Similarity NPD4338 Clinical (unspecified phase)
0.8841 High Similarity NPD2393 Clinical (unspecified phase)
0.878 High Similarity NPD1934 Approved
0.8545 High Similarity NPD4380 Phase 2
0.8503 High Similarity NPD2801 Approved
0.8457 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.8409 Intermediate Similarity NPD6559 Discontinued
0.8402 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.8353 Intermediate Similarity NPD7075 Discontinued
0.8343 Intermediate Similarity NPD3817 Phase 2
0.8293 Intermediate Similarity NPD1511 Approved
0.8256 Intermediate Similarity NPD5494 Approved
0.8235 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.8212 Intermediate Similarity NPD8312 Approved
0.8212 Intermediate Similarity NPD8313 Approved
0.8208 Intermediate Similarity NPD6959 Discontinued
0.8193 Intermediate Similarity NPD1512 Approved
0.8187 Intermediate Similarity NPD3882 Suspended
0.8182 Intermediate Similarity NPD7228 Approved
0.8176 Intermediate Similarity NPD7819 Suspended
0.8176 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.8133 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.8118 Intermediate Similarity NPD6801 Discontinued
0.8098 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.8034 Intermediate Similarity NPD5844 Phase 1
0.8031 Intermediate Similarity NPD8151 Discontinued
0.8023 Intermediate Similarity NPD7473 Discontinued
0.7989 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7965 Intermediate Similarity NPD1465 Phase 2
0.7965 Intermediate Similarity NPD8455 Phase 2
0.7955 Intermediate Similarity NPD6232 Discontinued
0.7953 Intermediate Similarity NPD7411 Suspended
0.7927 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.7927 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.7917 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.7901 Intermediate Similarity NPD7685 Pre-registration
0.7882 Intermediate Similarity NPD1653 Approved
0.7879 Intermediate Similarity NPD1549 Phase 2
0.7865 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7816 Intermediate Similarity NPD5402 Approved
0.7802 Intermediate Similarity NPD7240 Approved
0.7784 Intermediate Similarity NPD6234 Discontinued
0.7766 Intermediate Similarity NPD7783 Phase 2
0.7766 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.7758 Intermediate Similarity NPD2796 Approved
0.7744 Intermediate Similarity NPD7584 Approved
0.773 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7719 Intermediate Similarity NPD5403 Approved
0.7719 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7701 Intermediate Similarity NPD37 Approved
0.7697 Intermediate Similarity NPD1510 Phase 2
0.7697 Intermediate Similarity NPD7199 Phase 2
0.768 Intermediate Similarity NPD7698 Approved
0.768 Intermediate Similarity NPD7696 Phase 3
0.768 Intermediate Similarity NPD7697 Approved
0.767 Intermediate Similarity NPD7768 Phase 2
0.767 Intermediate Similarity NPD4967 Phase 2
0.767 Intermediate Similarity NPD4965 Approved
0.767 Intermediate Similarity NPD4966 Approved
0.7647 Intermediate Similarity NPD6799 Approved
0.7617 Intermediate Similarity NPD6776 Approved
0.7617 Intermediate Similarity NPD6781 Approved
0.7617 Intermediate Similarity NPD6780 Approved
0.7617 Intermediate Similarity NPD6777 Approved
0.7617 Intermediate Similarity NPD6782 Approved
0.7617 Intermediate Similarity NPD6779 Approved
0.7617 Intermediate Similarity NPD6778 Approved
0.7614 Intermediate Similarity NPD7701 Phase 2
0.7605 Intermediate Similarity NPD7266 Discontinued
0.7602 Intermediate Similarity NPD5401 Approved
0.759 Intermediate Similarity NPD7435 Discontinued
0.7584 Intermediate Similarity NPD919 Approved
0.7582 Intermediate Similarity NPD3751 Discontinued
0.7561 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7561 Intermediate Similarity NPD1613 Approved
0.7556 Intermediate Similarity NPD3787 Discontinued
0.7551 Intermediate Similarity NPD7871 Phase 2
0.7551 Intermediate Similarity NPD7870 Phase 2
0.7514 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7513 Intermediate Similarity NPD7699 Phase 2
0.7513 Intermediate Similarity NPD7700 Phase 2
0.75 Intermediate Similarity NPD1247 Approved
0.7486 Intermediate Similarity NPD6599 Discontinued
0.7462 Intermediate Similarity NPD8319 Approved
0.7462 Intermediate Similarity NPD8320 Phase 1
0.7461 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7456 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.7455 Intermediate Similarity NPD1240 Approved
0.745 Intermediate Similarity NPD7874 Approved
0.745 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.7449 Intermediate Similarity NPD6823 Phase 2
0.7442 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7413 Intermediate Similarity NPD7801 Approved
0.7412 Intermediate Similarity NPD6674 Discontinued
0.7399 Intermediate Similarity NPD2532 Approved
0.7399 Intermediate Similarity NPD2534 Approved
0.7399 Intermediate Similarity NPD2533 Approved
0.7385 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7378 Intermediate Similarity NPD3027 Phase 3
0.7368 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7368 Intermediate Similarity NPD3750 Approved
0.7365 Intermediate Similarity NPD1607 Approved
0.7362 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7358 Intermediate Similarity NPD6535 Approved
0.7358 Intermediate Similarity NPD6534 Approved
0.735 Intermediate Similarity NPD7585 Approved
0.7349 Intermediate Similarity NPD943 Approved
0.7347 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7337 Intermediate Similarity NPD2935 Discontinued
0.733 Intermediate Similarity NPD7458 Discontinued
0.7323 Intermediate Similarity NPD7680 Approved
0.7322 Intermediate Similarity NPD3926 Phase 2
0.7317 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7316 Intermediate Similarity NPD8150 Discontinued
0.731 Intermediate Similarity NPD2800 Approved
0.731 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7305 Intermediate Similarity NPD230 Phase 1
0.7305 Intermediate Similarity NPD1933 Approved
0.73 Intermediate Similarity NPD7583 Approved
0.7267 Intermediate Similarity NPD4628 Phase 3
0.7262 Intermediate Similarity NPD6651 Approved
0.7241 Intermediate Similarity NPD7390 Discontinued
0.7238 Intermediate Similarity NPD3749 Approved
0.7229 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7225 Intermediate Similarity NPD8434 Phase 2
0.7216 Intermediate Similarity NPD920 Approved
0.7209 Intermediate Similarity NPD1243 Approved
0.7196 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.7181 Intermediate Similarity NPD5953 Discontinued
0.7179 Intermediate Similarity NPD4363 Phase 3
0.7179 Intermediate Similarity NPD4360 Phase 2
0.7166 Intermediate Similarity NPD7286 Phase 2
0.7135 Intermediate Similarity NPD1551 Phase 2
0.7135 Intermediate Similarity NPD6100 Approved
0.7135 Intermediate Similarity NPD3226 Approved
0.7135 Intermediate Similarity NPD6099 Approved
0.7128 Intermediate Similarity NPD6213 Phase 3
0.7128 Intermediate Similarity NPD6212 Phase 3
0.7128 Intermediate Similarity NPD6214 Clinical (unspecified phase)
0.7126 Intermediate Similarity NPD6190 Approved
0.7102 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7101 Intermediate Similarity NPD447 Suspended
0.7095 Intermediate Similarity NPD8155 Clinical (unspecified phase)
0.7086 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.7076 Intermediate Similarity NPD3748 Approved
0.7069 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7053 Intermediate Similarity NPD7930 Approved
0.7027 Intermediate Similarity NPD8127 Discontinued
0.7024 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7024 Intermediate Similarity NPD2313 Discontinued
0.7006 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7006 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD5124 Phase 1
0.7 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.6994 Remote Similarity NPD2346 Discontinued
0.6989 Remote Similarity NPD5711 Approved
0.6989 Remote Similarity NPD5710 Approved
0.6977 Remote Similarity NPD2799 Discontinued
0.6977 Remote Similarity NPD1509 Clinical (unspecified phase)
0.6977 Remote Similarity NPD7033 Discontinued
0.6961 Remote Similarity NPD7615 Clinical (unspecified phase)
0.6948 Remote Similarity NPD5619 Clinical (unspecified phase)
0.6944 Remote Similarity NPD5808 Clinical (unspecified phase)
0.6943 Remote Similarity NPD7090 Clinical (unspecified phase)
0.694 Remote Similarity NPD5353 Approved
0.693 Remote Similarity NPD8058 Clinical (unspecified phase)
0.693 Remote Similarity NPD8059 Phase 3
0.6923 Remote Similarity NPD6841 Approved
0.6923 Remote Similarity NPD6843 Phase 3
0.6923 Remote Similarity NPD6842 Approved
0.6923 Remote Similarity NPD6844 Discontinued
0.6915 Remote Similarity NPD7784 Clinical (unspecified phase)
0.6905 Remote Similarity NPD6832 Phase 2
0.6905 Remote Similarity NPD4908 Phase 1
0.689 Remote Similarity NPD1091 Approved
0.6886 Remote Similarity NPD2798 Approved
0.6879 Remote Similarity NPD651 Clinical (unspecified phase)
0.6845 Remote Similarity NPD9494 Approved
0.6829 Remote Similarity NPD7211 Clinical (unspecified phase)
0.6821 Remote Similarity NPD7097 Phase 1
0.6818 Remote Similarity NPD1652 Phase 2
0.6809 Remote Similarity NPD7229 Phase 3
0.6807 Remote Similarity NPD4379 Clinical (unspecified phase)
0.68 Remote Similarity NPD4361 Phase 2
0.68 Remote Similarity NPD4362 Clinical (unspecified phase)
0.68 Remote Similarity NPD2344 Approved
0.6788 Remote Similarity NPD1547 Clinical (unspecified phase)
0.6782 Remote Similarity NPD8285 Discontinued

Structure

External Identifiers

PubChem CID   52951627
ChEMBL   CHEMBL1773496
ZINC  

Physicochemical Properties

Molecular Weight:  870.28
ALogP:  -6.2457
MLogP:  3.33
XLogP:  -2.106
# Rotatable Bonds:  29
Polar Surface Area:  364.9
# H-Bond Aceptor:  17
# H-Bond Donor:  14
# Rings:  6
# Heavy Atoms:  61

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
Similar NPs/Drugs