Natural Product: NPC142996

Natural Product ID:  NPC142996
Common Name:   1-O-[Beta-D-Xylopyranosyl-(1->6)-Beta-Dglucopyranosyl]-7-Hydroxy-3,4,8-Trimethoxyxanthone
IUPAC Name:   2-hydroxy-1,5,6-trimethoxy-8-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-[[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxymethyl]oxan-2-yl]oxyxanthen-9-one
Synonyms:  
Molecular Formula:   C27H32O16
Standard InCHIKey:  NCWXFEPNWDKNAA-OFRYIYKOSA-N
Standard InCHI:  InChI=1S/C27H32O16/c1-36-13-6-12(16-19(32)15-11(41-25(16)24(13)38-3)5-4-9(28)23(15)37-2)42-27-22(35)20(33)18(31)14(43-27)8-40-26-21(34)17(30)10(29)7-39-26/h4-6,10,14,17-18,20-22,26-31,33-35H,7-8H2,1-3H3/t10-,14-,17+,18-,20+,21-,22-,26+,27-/m1/s1
Canonical SMILES:  COc1cc(O[C@@H]2O[C@H](CO[C@@H]3OC[C@H]([C@@H]([C@H]3O)O)O)[C@H]([C@@H]([C@H]2O)O)O)c2c(c1OC)oc1c(c2=O)c(OC)c(cc1)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO9824 Swertia kouitchensis Species Gentianaceae Eukaryota PMID[23805995]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT2 Others Unspecified IC50 = 1503000 nM 23567957

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC142996 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9877 High Similarity NPC156977
0.9877 High Similarity NPC102028
0.9816 High Similarity NPC51774
0.9816 High Similarity NPC239549
0.9816 High Similarity NPC236191
0.9815 High Similarity NPC194483
0.9755 High Similarity NPC301683
0.9755 High Similarity NPC267254
0.9753 High Similarity NPC95855
0.9753 High Similarity NPC210042
0.9695 High Similarity NPC204693
0.9693 High Similarity NPC183357
0.9693 High Similarity NPC293004
0.9693 High Similarity NPC22195
0.9693 High Similarity NPC105095
0.9693 High Similarity NPC44328
0.9693 High Similarity NPC79056
0.9693 High Similarity NPC52353
0.9693 High Similarity NPC474434
0.9693 High Similarity NPC21190
0.9693 High Similarity NPC177731
0.9691 High Similarity NPC93099
0.9634 High Similarity NPC3583
0.9634 High Similarity NPC259152
0.9632 High Similarity NPC183036
0.9632 High Similarity NPC105283
0.9632 High Similarity NPC472381
0.9632 High Similarity NPC293629
0.9632 High Similarity NPC471457
0.9632 High Similarity NPC472383
0.9632 High Similarity NPC43587
0.9632 High Similarity NPC170675
0.9632 High Similarity NPC112755
0.9581 High Similarity NPC241423
0.9581 High Similarity NPC473682
0.9581 High Similarity NPC473571
0.9581 High Similarity NPC470443
0.9581 High Similarity NPC126784
0.9581 High Similarity NPC470444
0.9581 High Similarity NPC110941
0.9578 High Similarity NPC169733
0.9573 High Similarity NPC34287
0.9573 High Similarity NPC471416
0.9573 High Similarity NPC44558
0.9527 High Similarity NPC148710
0.9521 High Similarity NPC475261
0.9518 High Similarity NPC198199
0.9515 High Similarity NPC475155
0.9515 High Similarity NPC205076
0.9515 High Similarity NPC48773
0.9515 High Similarity NPC307518
0.9515 High Similarity NPC472386
0.9515 High Similarity NPC180918
0.9512 High Similarity NPC186807
0.9512 High Similarity NPC93337
0.9512 High Similarity NPC195257
0.9512 High Similarity NPC226294
0.9512 High Similarity NPC469931
0.9512 High Similarity NPC86008
0.9512 High Similarity NPC45638
0.9512 High Similarity NPC229687
0.9512 High Similarity NPC201292
0.9512 High Similarity NPC61791
0.9512 High Similarity NPC58053
0.9512 High Similarity NPC209296
0.9512 High Similarity NPC105025
0.9512 High Similarity NPC475942
0.9509 High Similarity NPC236934
0.9509 High Similarity NPC70441
0.9509 High Similarity NPC5778
0.9467 High Similarity NPC470449
0.9467 High Similarity NPC470447
0.9467 High Similarity NPC470446
0.9467 High Similarity NPC470445
0.9467 High Similarity NPC473072
0.9464 High Similarity NPC473895
0.9461 High Similarity NPC65563
0.9461 High Similarity NPC8573
0.9461 High Similarity NPC257714
0.9461 High Similarity NPC255799
0.9461 High Similarity NPC470949
0.9458 High Similarity NPC208668
0.9455 High Similarity NPC199079
0.9455 High Similarity NPC224462
0.9455 High Similarity NPC51326
0.9455 High Similarity NPC231194
0.9455 High Similarity NPC105511
0.9455 High Similarity NPC210808
0.9451 High Similarity NPC45400
0.9451 High Similarity NPC146792
0.9451 High Similarity NPC45618
0.9451 High Similarity NPC58716
0.9412 High Similarity NPC470455
0.9412 High Similarity NPC470451
0.9408 High Similarity NPC473071
0.9408 High Similarity NPC473073
0.9405 High Similarity NPC476619
0.9405 High Similarity NPC251417
0.9405 High Similarity NPC476622
0.9405 High Similarity NPC89052
0.9405 High Similarity NPC476621
0.9405 High Similarity NPC476623
0.9405 High Similarity NPC120952
0.9405 High Similarity NPC476618
0.9405 High Similarity NPC476620
0.9405 High Similarity NPC472387
0.9401 High Similarity NPC476472
0.9401 High Similarity NPC16194
0.9401 High Similarity NPC294815
0.9401 High Similarity NPC473327
0.9401 High Similarity NPC19108
0.9401 High Similarity NPC220173
0.9398 High Similarity NPC172807
0.9398 High Similarity NPC9002
0.9398 High Similarity NPC257011
0.9398 High Similarity NPC254540
0.9398 High Similarity NPC256760
0.9398 High Similarity NPC288152
0.9398 High Similarity NPC261254
0.9398 High Similarity NPC476405
0.9398 High Similarity NPC211594
0.9398 High Similarity NPC137871
0.9398 High Similarity NPC117260
0.939 High Similarity NPC115674
0.939 High Similarity NPC210073
0.939 High Similarity NPC181616
0.939 High Similarity NPC8856
0.939 High Similarity NPC99957
0.9387 High Similarity NPC29830
0.936 High Similarity NPC473618
0.9349 High Similarity NPC192539
0.9345 High Similarity NPC472382
0.9345 High Similarity NPC219043
0.9345 High Similarity NPC48984
0.9345 High Similarity NPC14187
0.9345 High Similarity NPC268533
0.9345 High Similarity NPC202908
0.9345 High Similarity NPC122467
0.9345 High Similarity NPC292019
0.9345 High Similarity NPC472380
0.9345 High Similarity NPC472384
0.9341 High Similarity NPC21666
0.9341 High Similarity NPC25724
0.9341 High Similarity NPC42773
0.9341 High Similarity NPC45522
0.9341 High Similarity NPC169977
0.9341 High Similarity NPC24043
0.9341 High Similarity NPC101026
0.9337 High Similarity NPC285197
0.9337 High Similarity NPC150767
0.9337 High Similarity NPC218488
0.9337 High Similarity NPC245014
0.9337 High Similarity NPC84265
0.9337 High Similarity NPC282987
0.9337 High Similarity NPC78734
0.9337 High Similarity NPC67105
0.9333 High Similarity NPC135345
0.9333 High Similarity NPC477502
0.9333 High Similarity NPC229729
0.9329 High Similarity NPC475366
0.9329 High Similarity NPC311830
0.9329 High Similarity NPC165720
0.9329 High Similarity NPC475497
0.9329 High Similarity NPC15358
0.9329 High Similarity NPC22832
0.9329 High Similarity NPC284277
0.9325 High Similarity NPC300537
0.9325 High Similarity NPC127782
0.9302 High Similarity NPC179947
0.929 High Similarity NPC168584
0.929 High Similarity NPC173837
0.929 High Similarity NPC241196
0.9286 High Similarity NPC477848
0.9286 High Similarity NPC472607
0.9281 High Similarity NPC33054
0.9281 High Similarity NPC155877
0.9281 High Similarity NPC203259
0.9281 High Similarity NPC471748
0.9281 High Similarity NPC134532
0.9281 High Similarity NPC60735
0.9281 High Similarity NPC176740
0.9281 High Similarity NPC26230
0.9281 High Similarity NPC471725
0.9277 High Similarity NPC270578
0.9277 High Similarity NPC227508
0.9277 High Similarity NPC52382
0.9268 High Similarity NPC127415
0.9268 High Similarity NPC270335
0.9268 High Similarity NPC94777
0.9268 High Similarity NPC309025
0.9268 High Similarity NPC222936
0.9268 High Similarity NPC284960
0.9268 High Similarity NPC88043
0.9268 High Similarity NPC243930
0.9268 High Similarity NPC191306
0.9268 High Similarity NPC88023
0.9268 High Similarity NPC19709
0.924 High Similarity NPC473883
0.9231 High Similarity NPC211532
0.9231 High Similarity NPC471669

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC142996 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9693 High Similarity NPD7074 Phase 3
0.9573 High Similarity NPD7472 Approved
0.9512 High Similarity NPD7054 Approved
0.9341 High Similarity NPD7251 Discontinued
0.9286 High Similarity NPD7808 Phase 3
0.9281 High Similarity NPD6797 Phase 2
0.9172 High Similarity NPD4338 Clinical (unspecified phase)
0.9102 High Similarity NPD3818 Discontinued
0.8982 High Similarity NPD6168 Clinical (unspecified phase)
0.8982 High Similarity NPD6167 Clinical (unspecified phase)
0.8982 High Similarity NPD6166 Phase 2
0.8848 High Similarity NPD4381 Clinical (unspecified phase)
0.8834 High Similarity NPD1934 Approved
0.8824 High Similarity NPD7804 Clinical (unspecified phase)
0.878 High Similarity NPD2801 Approved
0.8667 High Similarity NPD2393 Clinical (unspecified phase)
0.8452 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.8412 Intermediate Similarity NPD5494 Approved
0.84 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.8343 Intermediate Similarity NPD3882 Suspended
0.8284 Intermediate Similarity NPD3817 Phase 2
0.8263 Intermediate Similarity NPD4380 Phase 2
0.8249 Intermediate Similarity NPD6559 Discontinued
0.8232 Intermediate Similarity NPD1511 Approved
0.8187 Intermediate Similarity NPD7075 Discontinued
0.8142 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.8133 Intermediate Similarity NPD1512 Approved
0.8125 Intermediate Similarity NPD7228 Approved
0.8118 Intermediate Similarity NPD1465 Phase 2
0.8079 Intermediate Similarity NPD5844 Phase 1
0.807 Intermediate Similarity NPD5402 Approved
0.8056 Intermediate Similarity NPD8313 Approved
0.8056 Intermediate Similarity NPD8312 Approved
0.8046 Intermediate Similarity NPD6959 Discontinued
0.8036 Intermediate Similarity NPD1653 Approved
0.8033 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.8012 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.7975 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.7975 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.7966 Intermediate Similarity NPD7473 Discontinued
0.7965 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.7953 Intermediate Similarity NPD6801 Discontinued
0.7927 Intermediate Similarity NPD1549 Phase 2
0.7907 Intermediate Similarity NPD7819 Suspended
0.7898 Intermediate Similarity NPD6232 Discontinued
0.7857 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.7845 Intermediate Similarity NPD7685 Pre-registration
0.7821 Intermediate Similarity NPD3751 Discontinued
0.7806 Intermediate Similarity NPD7783 Phase 2
0.7806 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.7797 Intermediate Similarity NPD3787 Discontinued
0.7795 Intermediate Similarity NPD8151 Discontinued
0.7791 Intermediate Similarity NPD7411 Suspended
0.7772 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7765 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7749 Intermediate Similarity NPD6781 Approved
0.7749 Intermediate Similarity NPD6780 Approved
0.7749 Intermediate Similarity NPD6782 Approved
0.7749 Intermediate Similarity NPD6776 Approved
0.7749 Intermediate Similarity NPD6778 Approved
0.7749 Intermediate Similarity NPD6777 Approved
0.7749 Intermediate Similarity NPD6779 Approved
0.7747 Intermediate Similarity NPD7240 Approved
0.774 Intermediate Similarity NPD7199 Phase 2
0.7727 Intermediate Similarity NPD6234 Discontinued
0.772 Intermediate Similarity NPD7435 Discontinued
0.772 Intermediate Similarity NPD7697 Approved
0.772 Intermediate Similarity NPD7698 Approved
0.772 Intermediate Similarity NPD7696 Phase 3
0.7701 Intermediate Similarity NPD8455 Phase 2
0.7697 Intermediate Similarity NPD2796 Approved
0.7692 Intermediate Similarity NPD6799 Approved
0.7661 Intermediate Similarity NPD5403 Approved
0.7653 Intermediate Similarity NPD7701 Phase 2
0.7651 Intermediate Similarity NPD7266 Discontinued
0.7647 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.7644 Intermediate Similarity NPD37 Approved
0.7636 Intermediate Similarity NPD1510 Phase 2
0.7614 Intermediate Similarity NPD4967 Phase 2
0.7614 Intermediate Similarity NPD4965 Approved
0.7614 Intermediate Similarity NPD4966 Approved
0.7611 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7607 Intermediate Similarity NPD1613 Approved
0.7607 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.759 Intermediate Similarity NPD7870 Phase 2
0.759 Intermediate Similarity NPD7871 Phase 2
0.7577 Intermediate Similarity NPD6823 Phase 2
0.7556 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7552 Intermediate Similarity NPD7699 Phase 2
0.7552 Intermediate Similarity NPD7700 Phase 2
0.7544 Intermediate Similarity NPD5401 Approved
0.7542 Intermediate Similarity NPD1247 Approved
0.7529 Intermediate Similarity NPD6599 Discontinued
0.7513 Intermediate Similarity NPD7584 Approved
0.75 Intermediate Similarity NPD1240 Approved
0.75 Intermediate Similarity NPD943 Approved
0.7487 Intermediate Similarity NPD7874 Approved
0.7487 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.7487 Intermediate Similarity NPD6534 Approved
0.7487 Intermediate Similarity NPD6535 Approved
0.7485 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7459 Intermediate Similarity NPD3926 Phase 2
0.745 Intermediate Similarity NPD7801 Approved
0.7423 Intermediate Similarity NPD3027 Phase 3
0.7416 Intermediate Similarity NPD7768 Phase 2
0.7412 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.741 Intermediate Similarity NPD1607 Approved
0.7381 Intermediate Similarity NPD2935 Discontinued
0.7374 Intermediate Similarity NPD3749 Approved
0.7368 Intermediate Similarity NPD6190 Approved
0.7362 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7349 Intermediate Similarity NPD230 Phase 1
0.7349 Intermediate Similarity NPD1933 Approved
0.7333 Intermediate Similarity NPD919 Approved
0.7333 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7323 Intermediate Similarity NPD8320 Phase 1
0.7323 Intermediate Similarity NPD8319 Approved
0.731 Intermediate Similarity NPD3750 Approved
0.731 Intermediate Similarity NPD4628 Phase 3
0.7301 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7296 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7294 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD7680 Approved
0.7263 Intermediate Similarity NPD8434 Phase 2
0.7263 Intermediate Similarity NPD8150 Discontinued
0.7254 Intermediate Similarity NPD6214 Clinical (unspecified phase)
0.7254 Intermediate Similarity NPD6212 Phase 3
0.7254 Intermediate Similarity NPD6213 Phase 3
0.7251 Intermediate Similarity NPD2800 Approved
0.7246 Intermediate Similarity NPD447 Suspended
0.7241 Intermediate Similarity NPD2532 Approved
0.7241 Intermediate Similarity NPD2533 Approved
0.7241 Intermediate Similarity NPD2534 Approved
0.7204 Intermediate Similarity NPD7286 Phase 2
0.7176 Intermediate Similarity NPD1551 Phase 2
0.7175 Intermediate Similarity NPD7458 Discontinued
0.7159 Intermediate Similarity NPD920 Approved
0.7151 Intermediate Similarity NPD6844 Discontinued
0.7151 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7151 Intermediate Similarity NPD6674 Discontinued
0.7143 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7129 Intermediate Similarity NPD7585 Approved
0.7129 Intermediate Similarity NPD8155 Clinical (unspecified phase)
0.7128 Intermediate Similarity NPD5953 Discontinued
0.7101 Intermediate Similarity NPD6651 Approved
0.7079 Intermediate Similarity NPD3226 Approved
0.7079 Intermediate Similarity NPD7583 Approved
0.7076 Intermediate Similarity NPD6100 Approved
0.7076 Intermediate Similarity NPD6099 Approved
0.7045 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7018 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.7018 Intermediate Similarity NPD3748 Approved
0.6989 Remote Similarity NPD7390 Discontinued
0.6988 Remote Similarity NPD9494 Approved
0.6981 Remote Similarity NPD5619 Clinical (unspecified phase)
0.6978 Remote Similarity NPD5353 Approved
0.6963 Remote Similarity NPD8059 Phase 3
0.6963 Remote Similarity NPD4419 Clinical (unspecified phase)
0.6963 Remote Similarity NPD8058 Clinical (unspecified phase)
0.6954 Remote Similarity NPD4360 Phase 2
0.6954 Remote Similarity NPD4363 Phase 3
0.6949 Remote Similarity NPD642 Clinical (unspecified phase)
0.6946 Remote Similarity NPD6832 Phase 2
0.6946 Remote Similarity NPD4908 Phase 1
0.6946 Remote Similarity NPD7211 Clinical (unspecified phase)
0.6936 Remote Similarity NPD2346 Discontinued
0.6936 Remote Similarity NPD2344 Approved
0.6933 Remote Similarity NPD1091 Approved
0.6919 Remote Similarity NPD7033 Discontinued
0.6919 Remote Similarity NPD2799 Discontinued
0.6914 Remote Similarity NPD6398 Clinical (unspecified phase)
0.6906 Remote Similarity NPD7615 Clinical (unspecified phase)
0.6898 Remote Similarity NPD5242 Approved
0.6891 Remote Similarity NPD7090 Clinical (unspecified phase)
0.6882 Remote Similarity NPD8127 Discontinued
0.6881 Remote Similarity NPD5006 Approved
0.6881 Remote Similarity NPD5005 Approved
0.6875 Remote Similarity NPD7549 Discontinued
0.6872 Remote Similarity NPD6842 Approved
0.6872 Remote Similarity NPD6841 Approved
0.6872 Remote Similarity NPD6843 Phase 3
0.6864 Remote Similarity NPD2313 Discontinued
0.6864 Remote Similarity NPD4907 Clinical (unspecified phase)
0.686 Remote Similarity NPD7097 Phase 1
0.6857 Remote Similarity NPD1243 Approved
0.6854 Remote Similarity NPD7422 Clinical (unspecified phase)
0.6848 Remote Similarity NPD4379 Clinical (unspecified phase)
0.6845 Remote Similarity NPD5710 Approved
0.6845 Remote Similarity NPD5711 Approved
0.6842 Remote Similarity NPD7930 Approved
0.6836 Remote Similarity NPD643 Clinical (unspecified phase)
0.6829 Remote Similarity NPD1547 Clinical (unspecified phase)
0.6826 Remote Similarity NPD2798 Approved
0.6824 Remote Similarity NPD6233 Phase 2
0.6821 Remote Similarity NPD1509 Clinical (unspecified phase)
0.6813 Remote Similarity NPD6386 Approved
0.6813 Remote Similarity NPD6385 Approved
0.6796 Remote Similarity NPD5808 Clinical (unspecified phase)
0.6786 Remote Similarity NPD2861 Phase 2

Structure

External Identifiers

PubChem CID   71747857
ChEMBL   CHEMBL2409387
ZINC  

Physicochemical Properties

Molecular Weight:  612.17
ALogP:  -4.477
MLogP:  2.67
XLogP:  -2.157
# Rotatable Bonds:  18
Polar Surface Area:  232.52
# H-Bond Aceptor:  10
# H-Bond Donor:  7
# Rings:  5
# Heavy Atoms:  43

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
Similar NPs/Drugs