Natural Product: NPC135599

Natural Product ID:  NPC135599
Common Name:   Myricitrin
IUPAC Name:   5,7-dihydroxy-3-[(2S,3S,4S,5S,6R)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy-2-(3,4,5-trihydroxyphenyl)chromen-4-one
Synonyms:   Myricitrin
Molecular Formula:   C21H20O12
Standard InCHIKey:  DCYOADKBABEMIQ-FHAIKQJESA-N
Standard InCHI:  InChI=1S/C21H20O12/c1-6-14(26)17(29)18(30)21(31-6)33-20-16(28)13-9(23)4-8(22)5-12(13)32-19(20)7-2-10(24)15(27)11(25)3-7/h2-6,14,17-18,21-27,29-30H,1H3/t6-,14-,17+,18+,21+/m1/s1
Canonical SMILES:  Oc1cc(O)c2c(c1)oc(c(c2=O)O[C@@H]1O[C@H](C)[C@H]([C@@H]([C@@H]1O)O)O)c1cc(O)c(c(c1)O)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO11713 Hypericum scabrum Species Hypericaceae Eukaryota Uzbekistan PMID[15568778]
NPO31026 Myrica rubra Species Myricaceae Eukaryota barks PMID[23066712]
NPO5755.1 Bauhinia glauca Under-species NA NA PMID[26096681]
NPO12467 Cephalanthus occidentalis Species Rubiaceae Eukaryota TCMID*
NPO12529 Phedimus aizoon Species Crassulaceae Eukaryota TCMID*

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT2 Others Unspecified ID50 = 10.05 nM 1378087
NPT2 Others Unspecified ID50 = 9.69 nM 1378087
NPT1579 Organism Heliothis virescens Heliothis virescens ED50 = 0.11 % 10.1021/np50025a011
NPT2 Others Unspecified Activity = 37.7 8882428
NPT81 Cell Line A549 Homo sapiens IC50 > 20000 ug/ml 15568778
NPT83 Cell Line MCF7 Homo sapiens IC50 = 11200 ug/ml 15568778
NPT81 Cell Line A549 Homo sapiens Inhibition = 13 % 15568778
NPT2 Others Unspecified ID50 > 500 ug/ml 2607357
NPT2 Others Unspecified Activity = 0.89 MU 19944611
NPT2 Others Unspecified Inhibition = 20 % 22578462
NPT2 Others Unspecified Activity = 13198 umolequiv/g 23066712
NPT2 Others Unspecified IC50 = 127.5 ug/ml 23066712
NPT66 Individual Protein Acetylcholinesterase Electrophorus electricus Inhibition = 20.85 % 23062825
NPT67 Individual Protein Cholinesterase Equus caballus Inhibition = -2.1 % 23062825

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC135599 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC277174
1.0 High Similarity NPC73855
1.0 High Similarity NPC113968
1.0 High Similarity NPC328940
0.9936 High Similarity NPC127546
0.9936 High Similarity NPC52550
0.9936 High Similarity NPC19388
0.9936 High Similarity NPC325555
0.9936 High Similarity NPC226304
0.9936 High Similarity NPC223424
0.9936 High Similarity NPC265530
0.9936 High Similarity NPC84362
0.9936 High Similarity NPC173637
0.9936 High Similarity NPC240431
0.9936 High Similarity NPC317489
0.9936 High Similarity NPC55786
0.9873 High Similarity NPC145038
0.9873 High Similarity NPC88789
0.9873 High Similarity NPC219904
0.9873 High Similarity NPC118284
0.9873 High Similarity NPC120099
0.9873 High Similarity NPC56077
0.9873 High Similarity NPC253662
0.9873 High Similarity NPC203050
0.9873 High Similarity NPC223747
0.9873 High Similarity NPC276222
0.9873 High Similarity NPC308404
0.9873 High Similarity NPC274618
0.9873 High Similarity NPC179950
0.9873 High Similarity NPC281131
0.9873 High Similarity NPC225434
0.9811 High Similarity NPC95866
0.9811 High Similarity NPC244776
0.9811 High Similarity NPC206123
0.9811 High Similarity NPC116864
0.9809 High Similarity NPC277205
0.9808 High Similarity NPC473043
0.975 High Similarity NPC471748
0.975 High Similarity NPC203259
0.975 High Similarity NPC176740
0.975 High Similarity NPC190003
0.975 High Similarity NPC471725
0.975 High Similarity NPC153755
0.975 High Similarity NPC175107
0.975 High Similarity NPC33054
0.975 High Similarity NPC245452
0.975 High Similarity NPC155877
0.975 High Similarity NPC134532
0.9748 High Similarity NPC52382
0.9748 High Similarity NPC227508
0.9748 High Similarity NPC138927
0.9748 High Similarity NPC270578
0.9747 High Similarity NPC197285
0.9747 High Similarity NPC21100
0.9745 High Similarity NPC222936
0.9745 High Similarity NPC19709
0.9745 High Similarity NPC284960
0.9689 High Similarity NPC101026
0.9689 High Similarity NPC24043
0.9689 High Similarity NPC4390
0.9689 High Similarity NPC21666
0.9689 High Similarity NPC42773
0.9689 High Similarity NPC45522
0.9689 High Similarity NPC169977
0.9688 High Similarity NPC67105
0.9688 High Similarity NPC259896
0.9688 High Similarity NPC235260
0.9688 High Similarity NPC156869
0.9688 High Similarity NPC155763
0.9688 High Similarity NPC20505
0.9688 High Similarity NPC255157
0.9688 High Similarity NPC254855
0.9688 High Similarity NPC136042
0.9688 High Similarity NPC29958
0.9688 High Similarity NPC67326
0.9686 High Similarity NPC92565
0.9686 High Similarity NPC275454
0.9686 High Similarity NPC160156
0.9684 High Similarity NPC311830
0.9684 High Similarity NPC34531
0.9684 High Similarity NPC22832
0.9682 High Similarity NPC189142
0.9682 High Similarity NPC77660
0.963 High Similarity NPC294815
0.963 High Similarity NPC473327
0.963 High Similarity NPC19108
0.963 High Similarity NPC220173
0.963 High Similarity NPC476472
0.963 High Similarity NPC294629
0.963 High Similarity NPC16194
0.9627 High Similarity NPC26230
0.9627 High Similarity NPC60735
0.9627 High Similarity NPC476405
0.9627 High Similarity NPC117260
0.9625 High Similarity NPC476771
0.9623 High Similarity NPC210073
0.9623 High Similarity NPC115674
0.9623 High Similarity NPC255615
0.9623 High Similarity NPC67037
0.962 High Similarity NPC168822
0.962 High Similarity NPC243930
0.962 High Similarity NPC270335
0.962 High Similarity NPC309025
0.962 High Similarity NPC191306
0.962 High Similarity NPC88023
0.9571 High Similarity NPC470949
0.9571 High Similarity NPC198324
0.9571 High Similarity NPC202908
0.9571 High Similarity NPC122467
0.9571 High Similarity NPC292019
0.9571 High Similarity NPC65563
0.9571 High Similarity NPC89127
0.9571 High Similarity NPC472385
0.9571 High Similarity NPC14187
0.9571 High Similarity NPC471669
0.9565 High Similarity NPC245014
0.9565 High Similarity NPC285197
0.9565 High Similarity NPC84265
0.9565 High Similarity NPC282987
0.9563 High Similarity NPC149244
0.9563 High Similarity NPC229729
0.9563 High Similarity NPC48640
0.9557 High Similarity NPC300537
0.9557 High Similarity NPC127782
0.9554 High Similarity NPC110349
0.9512 High Similarity NPC258044
0.9512 High Similarity NPC217520
0.9512 High Similarity NPC217387
0.9512 High Similarity NPC196127
0.9512 High Similarity NPC251417
0.9512 High Similarity NPC293626
0.9512 High Similarity NPC267680
0.9512 High Similarity NPC139571
0.9512 High Similarity NPC35167
0.9512 High Similarity NPC168584
0.9512 High Similarity NPC89052
0.9512 High Similarity NPC173837
0.9509 High Similarity NPC49344
0.9509 High Similarity NPC210094
0.9509 High Similarity NPC43211
0.9509 High Similarity NPC34267
0.9509 High Similarity NPC214621
0.9509 High Similarity NPC101191
0.9509 High Similarity NPC264735
0.9509 High Similarity NPC253685
0.9509 High Similarity NPC477848
0.9509 High Similarity NPC115760
0.9509 High Similarity NPC237435
0.9509 High Similarity NPC135277
0.9509 High Similarity NPC223426
0.9509 High Similarity NPC81042
0.9506 High Similarity NPC476772
0.9503 High Similarity NPC45638
0.9503 High Similarity NPC475942
0.9503 High Similarity NPC201292
0.9503 High Similarity NPC58053
0.9503 High Similarity NPC105025
0.9503 High Similarity NPC209296
0.9503 High Similarity NPC186807
0.9503 High Similarity NPC93337
0.9503 High Similarity NPC195257
0.9503 High Similarity NPC226294
0.9503 High Similarity NPC469931
0.95 High Similarity NPC254306
0.95 High Similarity NPC5778
0.95 High Similarity NPC8856
0.95 High Similarity NPC236934
0.9497 High Similarity NPC29830
0.9494 High Similarity NPC182045
0.949 High Similarity NPC41121
0.949 High Similarity NPC472459
0.949 High Similarity NPC320283
0.949 High Similarity NPC111929
0.9487 High Similarity NPC261866
0.9455 High Similarity NPC470443
0.9455 High Similarity NPC470444
0.9455 High Similarity NPC110941
0.9455 High Similarity NPC241423
0.9455 High Similarity NPC473571
0.9455 High Similarity NPC192539
0.9455 High Similarity NPC473682
0.9455 High Similarity NPC126784
0.9451 High Similarity NPC473862
0.9451 High Similarity NPC144097
0.9451 High Similarity NPC233994
0.9451 High Similarity NPC48984
0.9451 High Similarity NPC211532
0.9451 High Similarity NPC61904
0.9451 High Similarity NPC8573
0.9451 High Similarity NPC219043
0.9451 High Similarity NPC169733
0.9444 High Similarity NPC150767
0.9444 High Similarity NPC224462
0.9444 High Similarity NPC231194
0.9444 High Similarity NPC72249
0.9444 High Similarity NPC78734
0.9444 High Similarity NPC51326
0.9441 High Similarity NPC146792
0.9441 High Similarity NPC477502
0.9441 High Similarity NPC58716

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC135599 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.975 High Similarity NPD6797 Phase 2
0.9689 High Similarity NPD7251 Discontinued
0.9509 High Similarity NPD7808 Phase 3
0.9509 High Similarity NPD4338 Clinical (unspecified phase)
0.9503 High Similarity NPD7054 Approved
0.9444 High Similarity NPD7472 Approved
0.9325 High Similarity NPD7074 Phase 3
0.9202 High Similarity NPD3818 Discontinued
0.9182 High Similarity NPD4381 Clinical (unspecified phase)
0.9146 High Similarity NPD7804 Clinical (unspecified phase)
0.908 High Similarity NPD6167 Clinical (unspecified phase)
0.908 High Similarity NPD6166 Phase 2
0.908 High Similarity NPD6168 Clinical (unspecified phase)
0.8938 High Similarity NPD3817 Phase 2
0.8931 High Similarity NPD1934 Approved
0.8875 High Similarity NPD2393 Clinical (unspecified phase)
0.879 High Similarity NPD1512 Approved
0.8765 High Similarity NPD3882 Suspended
0.8758 High Similarity NPD2801 Approved
0.8662 High Similarity NPD1511 Approved
0.865 High Similarity NPD4868 Clinical (unspecified phase)
0.8598 High Similarity NPD7075 Discontinued
0.8571 High Similarity NPD4380 Phase 2
0.848 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.8476 Intermediate Similarity NPD5402 Approved
0.8466 Intermediate Similarity NPD6801 Discontinued
0.843 Intermediate Similarity NPD6559 Discontinued
0.8415 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.8385 Intermediate Similarity NPD5403 Approved
0.8375 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.8313 Intermediate Similarity NPD6799 Approved
0.8261 Intermediate Similarity NPD5401 Approved
0.8165 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.8165 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.8113 Intermediate Similarity NPD1549 Phase 2
0.8111 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.811 Intermediate Similarity NPD1653 Approved
0.8092 Intermediate Similarity NPD3751 Discontinued
0.807 Intermediate Similarity NPD3787 Discontinued
0.8059 Intermediate Similarity NPD5494 Approved
0.8036 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.8012 Intermediate Similarity NPD6599 Discontinued
0.8012 Intermediate Similarity NPD6959 Discontinued
0.7987 Intermediate Similarity NPD2796 Approved
0.7976 Intermediate Similarity NPD7819 Suspended
0.7976 Intermediate Similarity NPD1465 Phase 2
0.7964 Intermediate Similarity NPD7411 Suspended
0.7943 Intermediate Similarity NPD5844 Phase 1
0.7927 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.7925 Intermediate Similarity NPD1510 Phase 2
0.7919 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.791 Intermediate Similarity NPD7685 Pre-registration
0.7886 Intermediate Similarity NPD7228 Approved
0.7861 Intermediate Similarity NPD6232 Discontinued
0.7831 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7829 Intermediate Similarity NPD7473 Discontinued
0.7803 Intermediate Similarity NPD7199 Phase 2
0.7791 Intermediate Similarity NPD6234 Discontinued
0.7791 Intermediate Similarity NPD919 Approved
0.7785 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7785 Intermediate Similarity NPD1613 Approved
0.7778 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.7744 Intermediate Similarity NPD6190 Approved
0.7735 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7722 Intermediate Similarity NPD8313 Approved
0.7722 Intermediate Similarity NPD8312 Approved
0.7716 Intermediate Similarity NPD7266 Discontinued
0.7713 Intermediate Similarity NPD6780 Approved
0.7713 Intermediate Similarity NPD6781 Approved
0.7713 Intermediate Similarity NPD6782 Approved
0.7713 Intermediate Similarity NPD6777 Approved
0.7713 Intermediate Similarity NPD6776 Approved
0.7713 Intermediate Similarity NPD6778 Approved
0.7713 Intermediate Similarity NPD6779 Approved
0.7706 Intermediate Similarity NPD37 Approved
0.7701 Intermediate Similarity NPD1247 Approved
0.7684 Intermediate Similarity NPD7435 Discontinued
0.7683 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7674 Intermediate Similarity NPD4967 Phase 2
0.7674 Intermediate Similarity NPD4966 Approved
0.7674 Intermediate Similarity NPD4965 Approved
0.7673 Intermediate Similarity NPD1240 Approved
0.767 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7656 Intermediate Similarity NPD7584 Approved
0.7625 Intermediate Similarity NPD230 Phase 1
0.7614 Intermediate Similarity NPD3926 Phase 2
0.7609 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.758 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7578 Intermediate Similarity NPD1607 Approved
0.7577 Intermediate Similarity NPD8151 Discontinued
0.7576 Intermediate Similarity NPD3750 Approved
0.7562 Intermediate Similarity NPD943 Approved
0.7553 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7545 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7532 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7516 Intermediate Similarity NPD1933 Approved
0.75 Intermediate Similarity NPD7696 Phase 3
0.75 Intermediate Similarity NPD7697 Approved
0.75 Intermediate Similarity NPD7698 Approved
0.7484 Intermediate Similarity NPD3027 Phase 3
0.7471 Intermediate Similarity NPD7768 Phase 2
0.747 Intermediate Similarity NPD4628 Phase 3
0.7461 Intermediate Similarity NPD7870 Phase 2
0.7461 Intermediate Similarity NPD7871 Phase 2
0.7457 Intermediate Similarity NPD8455 Phase 2
0.7449 Intermediate Similarity NPD7874 Approved
0.7449 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.7447 Intermediate Similarity NPD6534 Approved
0.7447 Intermediate Similarity NPD6535 Approved
0.7439 Intermediate Similarity NPD1551 Phase 2
0.7438 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7436 Intermediate Similarity NPD7701 Phase 2
0.7429 Intermediate Similarity NPD3749 Approved
0.7418 Intermediate Similarity NPD7240 Approved
0.7396 Intermediate Similarity NPD2533 Approved
0.7396 Intermediate Similarity NPD2532 Approved
0.7396 Intermediate Similarity NPD2534 Approved
0.7378 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.7333 Intermediate Similarity NPD2935 Discontinued
0.733 Intermediate Similarity NPD7699 Phase 2
0.733 Intermediate Similarity NPD7700 Phase 2
0.7323 Intermediate Similarity NPD7783 Phase 2
0.7323 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.7323 Intermediate Similarity NPD7801 Approved
0.7305 Intermediate Similarity NPD2800 Approved
0.7305 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7301 Intermediate Similarity NPD447 Suspended
0.7282 Intermediate Similarity NPD8319 Approved
0.7282 Intermediate Similarity NPD8320 Phase 1
0.7278 Intermediate Similarity NPD7784 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD3748 Approved
0.7268 Intermediate Similarity NPD6823 Phase 2
0.7259 Intermediate Similarity NPD7585 Approved
0.7229 Intermediate Similarity NPD6099 Approved
0.7229 Intermediate Similarity NPD6100 Approved
0.7222 Intermediate Similarity NPD6798 Discontinued
0.7219 Intermediate Similarity NPD8434 Phase 2
0.7219 Intermediate Similarity NPD8150 Discontinued
0.7209 Intermediate Similarity NPD920 Approved
0.7208 Intermediate Similarity NPD7583 Approved
0.7202 Intermediate Similarity NPD6674 Discontinued
0.7202 Intermediate Similarity NPD1243 Approved
0.7197 Intermediate Similarity NPD1091 Approved
0.7193 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7189 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.7178 Intermediate Similarity NPD6233 Phase 2
0.7174 Intermediate Similarity NPD5953 Discontinued
0.7173 Intermediate Similarity NPD4363 Phase 3
0.7173 Intermediate Similarity NPD4360 Phase 2
0.7169 Intermediate Similarity NPD7033 Discontinued
0.7165 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7152 Intermediate Similarity NPD6651 Approved
0.7135 Intermediate Similarity NPD7390 Discontinued
0.7126 Intermediate Similarity NPD3226 Approved
0.7126 Intermediate Similarity NPD7458 Discontinued
0.7113 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7102 Intermediate Similarity NPD6844 Discontinued
0.7101 Intermediate Similarity NPD1652 Phase 2
0.7099 Intermediate Similarity NPD4908 Phase 1
0.7099 Intermediate Similarity NPD6832 Phase 2
0.7093 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7091 Intermediate Similarity NPD6355 Discontinued
0.7087 Intermediate Similarity NPD8155 Clinical (unspecified phase)
0.7081 Intermediate Similarity NPD2798 Approved
0.7076 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.7065 Intermediate Similarity NPD7286 Phase 2
0.7059 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7037 Intermediate Similarity NPD9494 Approved
0.7031 Intermediate Similarity NPD6214 Clinical (unspecified phase)
0.7031 Intermediate Similarity NPD6212 Phase 3
0.7031 Intermediate Similarity NPD6213 Phase 3
0.7022 Intermediate Similarity NPD5353 Approved
0.7019 Intermediate Similarity NPD5619 Clinical (unspecified phase)
0.7019 Intermediate Similarity NPD1203 Approved
0.7012 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7012 Intermediate Similarity NPD2313 Discontinued
0.7 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.6995 Remote Similarity NPD2403 Approved
0.6994 Remote Similarity NPD7422 Clinical (unspecified phase)
0.6988 Remote Similarity NPD5123 Clinical (unspecified phase)
0.6988 Remote Similarity NPD5124 Phase 1
0.6988 Remote Similarity NPD1899 Clinical (unspecified phase)
0.6982 Remote Similarity NPD2346 Discontinued
0.6982 Remote Similarity NPD2344 Approved
0.6981 Remote Similarity NPD1547 Clinical (unspecified phase)
0.6978 Remote Similarity NPD5710 Approved
0.6978 Remote Similarity NPD5711 Approved
0.697 Remote Similarity NPD7680 Approved
0.6964 Remote Similarity NPD1509 Clinical (unspecified phase)
0.6964 Remote Similarity NPD2799 Discontinued
0.6943 Remote Similarity NPD1548 Phase 1
0.6937 Remote Similarity NPD9269 Phase 2
0.6932 Remote Similarity NPD5808 Clinical (unspecified phase)
0.6928 Remote Similarity NPD4060 Phase 1
0.6919 Remote Similarity NPD2163 Approved
0.6911 Remote Similarity NPD6841 Approved
0.6911 Remote Similarity NPD6842 Approved
0.6911 Remote Similarity NPD6843 Phase 3
0.6909 Remote Similarity NPD3268 Approved
0.69 Remote Similarity NPD7211 Clinical (unspecified phase)

Structure

External Identifiers

PubChem CID   40491193
ChEMBL   CHEMBL454576
ZINC  

Physicochemical Properties

Molecular Weight:  464.10
ALogP:  -4.8524
MLogP:  2.45
XLogP:  -0.185
# Rotatable Bonds:  12
Polar Surface Area:  206.6
# H-Bond Aceptor:  6
# H-Bond Donor:  8
# Rings:  4
# Heavy Atoms:  33

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs