Natural Product: NPC225307

Natural Product ID:  NPC225307
Common Name:   Lapathoside D
IUPAC Name:   [(2R,3R,4S,5S)-3-hydroxy-5-(hydroxymethyl)-4-[(E)-3-(4-hydroxyphenyl)prop-2-enoyl]oxy-5-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxolan-2-yl]methyl (E)-3-(4-hydroxyphenyl)prop-2-enoate
Synonyms:   Lapathoside D
Molecular Formula:   C30H34O15
Standard InCHIKey:  BZSLWPMWZXMHEW-JSCCKXNGSA-N
Standard InCHI:  InChI=1S/C30H34O15/c31-13-20-24(37)26(39)27(40)29(42-20)45-30(15-32)28(43-23(36)12-6-17-3-9-19(34)10-4-17)25(38)21(44-30)14-41-22(35)11-5-16-1-7-18(33)8-2-16/h1-12,20-21,24-29,31-34,37-40H,13-15H2/b11-5+,12-6+/t20-,21-,24-,25-,26+,27-,28+,29-,30+/m1/s1
Canonical SMILES:  OC[C@H]1O[C@H](O[C@]2(CO)O[C@@H]([C@H]([C@@H]2OC(=O)/C=C/c2ccc(cc2)O)O)COC(=O)/C=C/c2ccc(cc2)O)[C@@H]([C@H]([C@@H]1O)O)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO7193 Persicaria lapathifolia Species Polygonaceae Eukaryota TCMID*

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT2 Others Unspecified Activity = 10.5 % 11678656
NPT2 Others Unspecified Activity = 38.3 % 11678656
NPT2 Others Unspecified Activity = 71.4 % 11678656
NPT2 Others Unspecified Activity = 100 % 11678656
NPT80 Cell Line Raji Homo sapiens Activity = 70 % 11678656
NPT80 Cell Line Raji Homo sapiens Activity > 80 % 11678656
NPT165 Cell Line HeLa Homo sapiens IC50 > 100000 nM 22542106

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC225307 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9758 High Similarity NPC478255
0.9603 High Similarity NPC28637
0.9593 High Similarity NPC156692
0.9593 High Similarity NPC173150
0.9593 High Similarity NPC45224
0.9593 High Similarity NPC471882
0.9593 High Similarity NPC471881
0.9593 High Similarity NPC288416
0.9593 High Similarity NPC35288
0.959 High Similarity NPC83218
0.959 High Similarity NPC126991
0.9512 High Similarity NPC471157
0.9504 High Similarity NPC52097
0.9444 High Similarity NPC246869
0.9444 High Similarity NPC225384
0.9444 High Similarity NPC138777
0.9444 High Similarity NPC46137
0.9444 High Similarity NPC235294
0.9435 High Similarity NPC106677
0.9421 High Similarity NPC11724
0.9355 High Similarity NPC61181
0.9355 High Similarity NPC252114
0.9339 High Similarity NPC476872
0.928 High Similarity NPC103533
0.9237 High Similarity NPC171134
0.9237 High Similarity NPC321638
0.9237 High Similarity NPC321184
0.9237 High Similarity NPC328273
0.9154 High Similarity NPC263829
0.9141 High Similarity NPC219677
0.9141 High Similarity NPC254819
0.9141 High Similarity NPC281798
0.9134 High Similarity NPC253595
0.9077 High Similarity NPC886
0.9077 High Similarity NPC34293
0.9077 High Similarity NPC287597
0.9077 High Similarity NPC471883
0.907 High Similarity NPC473924
0.9032 High Similarity NPC471067
0.9015 High Similarity NPC260425
0.9008 High Similarity NPC476870
0.9 High Similarity NPC254398
0.8984 High Similarity NPC229784
0.8984 High Similarity NPC477293
0.8984 High Similarity NPC477294
0.8963 High Similarity NPC105005
0.8963 High Similarity NPC40305
0.8963 High Similarity NPC478250
0.896 High Similarity NPC232454
0.896 High Similarity NPC470907
0.896 High Similarity NPC178449
0.8947 High Similarity NPC472350
0.8947 High Similarity NPC197316
0.8947 High Similarity NPC205195
0.8947 High Similarity NPC81515
0.8947 High Similarity NPC476383
0.8947 High Similarity NPC68092
0.8947 High Similarity NPC89105
0.8947 High Similarity NPC64141
0.8939 High Similarity NPC471345
0.8939 High Similarity NPC166180
0.8923 High Similarity NPC473285
0.8906 High Similarity NPC232880
0.8897 High Similarity NPC296954
0.8897 High Similarity NPC300894
0.8897 High Similarity NPC141455
0.8897 High Similarity NPC196063
0.8897 High Similarity NPC110063
0.8872 High Similarity NPC78363
0.8871 High Similarity NPC160854
0.8871 High Similarity NPC469703
0.8871 High Similarity NPC469704
0.8871 High Similarity NPC201402
0.8871 High Similarity NPC229600
0.8832 High Similarity NPC287615
0.8832 High Similarity NPC216819
0.8832 High Similarity NPC83743
0.8832 High Similarity NPC262182
0.8828 High Similarity NPC476873
0.8815 High Similarity NPC47471
0.8815 High Similarity NPC134405
0.8815 High Similarity NPC476385
0.8815 High Similarity NPC476377
0.88 High Similarity NPC469686
0.8797 High Similarity NPC470572
0.879 High Similarity NPC469702
0.879 High Similarity NPC282409
0.8788 High Similarity NPC169398
0.8768 High Similarity NPC229505
0.876 High Similarity NPC313193
0.875 High Similarity NPC265648
0.875 High Similarity NPC222433
0.8741 High Similarity NPC475530
0.8741 High Similarity NPC473799
0.8731 High Similarity NPC476376
0.872 High Similarity NPC476448
0.872 High Similarity NPC476445
0.872 High Similarity NPC469548
0.8692 High Similarity NPC295970
0.8686 High Similarity NPC247032
0.8686 High Similarity NPC96795
0.8686 High Similarity NPC476397
0.8686 High Similarity NPC175214
0.8686 High Similarity NPC76406
0.8686 High Similarity NPC476381
0.8686 High Similarity NPC269141
0.8686 High Similarity NPC476384
0.8686 High Similarity NPC119537
0.8686 High Similarity NPC476380
0.8686 High Similarity NPC112
0.8686 High Similarity NPC264632
0.8686 High Similarity NPC298257
0.8686 High Similarity NPC476378
0.8686 High Similarity NPC205864
0.8686 High Similarity NPC476375
0.8682 High Similarity NPC469687
0.8676 High Similarity NPC186406
0.8667 High Similarity NPC49597
0.8667 High Similarity NPC226005
0.8667 High Similarity NPC220942
0.8667 High Similarity NPC31745
0.8667 High Similarity NPC220936
0.8657 High Similarity NPC472132
0.8643 High Similarity NPC201148
0.8643 High Similarity NPC3460
0.8643 High Similarity NPC199311
0.8643 High Similarity NPC192763
0.8643 High Similarity NPC28651
0.8643 High Similarity NPC215095
0.8643 High Similarity NPC300262
0.8643 High Similarity NPC261122
0.8643 High Similarity NPC210611
0.8643 High Similarity NPC80732
0.8636 High Similarity NPC471095
0.8636 High Similarity NPC471066
0.8623 High Similarity NPC64195
0.8623 High Similarity NPC476867
0.8618 High Similarity NPC175771
0.8613 High Similarity NPC145319
0.8613 High Similarity NPC157816
0.8613 High Similarity NPC140502
0.8593 High Similarity NPC65262
0.8593 High Similarity NPC469364
0.8593 High Similarity NPC101686
0.8582 High Similarity NPC90896
0.8582 High Similarity NPC283839
0.8571 High Similarity NPC164172
0.8561 High Similarity NPC476866
0.8561 High Similarity NPC476864
0.8561 High Similarity NPC476868
0.8561 High Similarity NPC100998
0.8561 High Similarity NPC476869
0.8561 High Similarity NPC252292
0.8561 High Similarity NPC34927
0.8561 High Similarity NPC476382
0.8561 High Similarity NPC34587
0.8551 High Similarity NPC204644
0.8551 High Similarity NPC293154
0.8551 High Similarity NPC478239
0.854 High Similarity NPC46644
0.8521 High Similarity NPC470934
0.8521 High Similarity NPC188393
0.8519 High Similarity NPC157554
0.8511 High Similarity NPC120728
0.8504 High Similarity NPC55608
0.85 High Similarity NPC476865
0.85 High Similarity NPC320734
0.8489 Intermediate Similarity NPC184464
0.8489 Intermediate Similarity NPC292443
0.8489 Intermediate Similarity NPC232228
0.8489 Intermediate Similarity NPC63304
0.8489 Intermediate Similarity NPC297342
0.8489 Intermediate Similarity NPC202391
0.8489 Intermediate Similarity NPC251062
0.8489 Intermediate Similarity NPC296659
0.8485 Intermediate Similarity NPC470122
0.8485 Intermediate Similarity NPC469705
0.8485 Intermediate Similarity NPC17968
0.8478 Intermediate Similarity NPC148080
0.8478 Intermediate Similarity NPC469623
0.8473 Intermediate Similarity NPC146540
0.8468 Intermediate Similarity NPC148055
0.8467 Intermediate Similarity NPC202700
0.8462 Intermediate Similarity NPC143480
0.8462 Intermediate Similarity NPC125823
0.8462 Intermediate Similarity NPC85192
0.8462 Intermediate Similarity NPC7145
0.8456 Intermediate Similarity NPC124149
0.8455 Intermediate Similarity NPC157338
0.844 Intermediate Similarity NPC232992
0.8433 Intermediate Similarity NPC114116
0.8417 Intermediate Similarity NPC152796
0.8417 Intermediate Similarity NPC88754
0.8417 Intermediate Similarity NPC116104
0.8417 Intermediate Similarity NPC237872
0.8417 Intermediate Similarity NPC263397
0.8417 Intermediate Similarity NPC302286
0.8417 Intermediate Similarity NPC475213
0.8409 Intermediate Similarity NPC469549
0.8406 Intermediate Similarity NPC476442

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC225307 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8947 High Similarity NPD7266 Discontinued
0.7823 Intermediate Similarity NPD1653 Approved
0.7803 Intermediate Similarity NPD1091 Approved
0.7778 Intermediate Similarity NPD6190 Approved
0.7638 Intermediate Similarity NPD969 Suspended
0.7535 Intermediate Similarity NPD4978 Clinical (unspecified phase)
0.7532 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.7451 Intermediate Similarity NPD8455 Phase 2
0.7407 Intermediate Similarity NPD7685 Pre-registration
0.7388 Intermediate Similarity NPD5126 Approved
0.7388 Intermediate Similarity NPD5125 Phase 3
0.7323 Intermediate Similarity NPD1358 Approved
0.7315 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7305 Intermediate Similarity NPD3764 Approved
0.7301 Intermediate Similarity NPD6559 Discontinued
0.7273 Intermediate Similarity NPD4340 Discontinued
0.7267 Intermediate Similarity NPD7228 Approved
0.7267 Intermediate Similarity NPD3818 Discontinued
0.7248 Intermediate Similarity NPD5058 Phase 3
0.7239 Intermediate Similarity NPD9545 Approved
0.723 Intermediate Similarity NPD4628 Phase 3
0.7172 Intermediate Similarity NPD7097 Phase 1
0.7162 Intermediate Similarity NPD1652 Phase 2
0.7161 Intermediate Similarity NPD37 Approved
0.7152 Intermediate Similarity NPD6234 Discontinued
0.7143 Intermediate Similarity NPD4380 Phase 2
0.7134 Intermediate Similarity NPD4966 Approved
0.7134 Intermediate Similarity NPD4965 Approved
0.7134 Intermediate Similarity NPD4967 Phase 2
0.7133 Intermediate Similarity NPD6233 Phase 2
0.7117 Intermediate Similarity NPD7054 Approved
0.7117 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.7113 Intermediate Similarity NPD3027 Phase 3
0.7109 Intermediate Similarity NPD3134 Approved
0.7089 Intermediate Similarity NPD7075 Discontinued
0.7083 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7083 Intermediate Similarity NPD1613 Approved
0.7073 Intermediate Similarity NPD7472 Approved
0.7073 Intermediate Similarity NPD7074 Phase 3
0.7059 Intermediate Similarity NPD1357 Approved
0.705 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.7048 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7025 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7024 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7007 Intermediate Similarity NPD5588 Approved
0.7006 Intermediate Similarity NPD8312 Approved
0.7006 Intermediate Similarity NPD8313 Approved
0.6988 Remote Similarity NPD7251 Discontinued
0.6972 Remote Similarity NPD2861 Phase 2
0.6966 Remote Similarity NPD7966 Clinical (unspecified phase)
0.6948 Remote Similarity NPD6980 Clinical (unspecified phase)
0.6948 Remote Similarity NPD5403 Approved
0.6946 Remote Similarity NPD7808 Phase 3
0.6944 Remote Similarity NPD6859 Clinical (unspecified phase)
0.6944 Remote Similarity NPD6798 Discontinued
0.6928 Remote Similarity NPD6797 Phase 2
0.6918 Remote Similarity NPD6355 Discontinued
0.6918 Remote Similarity NPD5124 Phase 1
0.6918 Remote Similarity NPD5123 Clinical (unspecified phase)
0.6918 Remote Similarity NPD230 Phase 1
0.6917 Remote Similarity NPD7843 Approved
0.6906 Remote Similarity NPD422 Phase 1
0.6906 Remote Similarity NPD3705 Approved
0.6899 Remote Similarity NPD7096 Clinical (unspecified phase)
0.6892 Remote Similarity NPD7033 Discontinued
0.6886 Remote Similarity NPD7240 Approved
0.6879 Remote Similarity NPD3225 Approved
0.6861 Remote Similarity NPD1548 Phase 1
0.6855 Remote Similarity NPD2934 Approved
0.6855 Remote Similarity NPD2933 Approved
0.6852 Remote Similarity NPD7199 Phase 2
0.6849 Remote Similarity NPD4060 Phase 1
0.6835 Remote Similarity NPD6801 Discontinued
0.6824 Remote Similarity NPD4536 Approved
0.6824 Remote Similarity NPD4537 Clinical (unspecified phase)
0.6824 Remote Similarity NPD4538 Approved
0.6821 Remote Similarity NPD7421 Clinical (unspecified phase)
0.6821 Remote Similarity NPD7879 Clinical (unspecified phase)
0.6821 Remote Similarity NPD6674 Discontinued
0.6818 Remote Similarity NPD5401 Approved
0.6806 Remote Similarity NPD1529 Clinical (unspecified phase)
0.6806 Remote Similarity NPD4908 Phase 1
0.68 Remote Similarity NPD2859 Approved
0.68 Remote Similarity NPD2860 Approved
0.6791 Remote Similarity NPD5535 Approved
0.6786 Remote Similarity NPD1610 Phase 2
0.6783 Remote Similarity NPD6007 Clinical (unspecified phase)
0.6781 Remote Similarity NPD4062 Phase 3
0.6779 Remote Similarity NPD5960 Phase 3
0.6776 Remote Similarity NPD8166 Discontinued
0.6765 Remote Similarity NPD7157 Approved
0.6759 Remote Similarity NPD7095 Approved
0.6759 Remote Similarity NPD5952 Clinical (unspecified phase)
0.6757 Remote Similarity NPD6653 Approved
0.6755 Remote Similarity NPD1549 Phase 2
0.6753 Remote Similarity NPD6799 Approved
0.6752 Remote Similarity NPD7458 Discontinued
0.675 Remote Similarity NPD5402 Approved
0.6742 Remote Similarity NPD2684 Approved
0.6736 Remote Similarity NPD5736 Approved
0.6736 Remote Similarity NPD1530 Clinical (unspecified phase)
0.6721 Remote Similarity NPD689 Discontinued
0.6719 Remote Similarity NPD1242 Phase 1
0.6718 Remote Similarity NPD968 Approved
0.6715 Remote Similarity NPD694 Clinical (unspecified phase)
0.6713 Remote Similarity NPD3094 Phase 2
0.6712 Remote Similarity NPD4907 Clinical (unspecified phase)
0.671 Remote Similarity NPD3536 Discontinued
0.6689 Remote Similarity NPD1550 Clinical (unspecified phase)
0.6689 Remote Similarity NPD1933 Approved
0.6689 Remote Similarity NPD1552 Clinical (unspecified phase)
0.6689 Remote Similarity NPD5763 Approved
0.6689 Remote Similarity NPD5762 Approved
0.6667 Remote Similarity NPD7184 Clinical (unspecified phase)
0.6667 Remote Similarity NPD1878 Clinical (unspecified phase)
0.6667 Remote Similarity NPD3750 Approved
0.6667 Remote Similarity NPD290 Approved
0.6667 Remote Similarity NPD9265 Clinical (unspecified phase)
0.6667 Remote Similarity NPD5536 Phase 2
0.6667 Remote Similarity NPD7411 Suspended
0.6667 Remote Similarity NPD1535 Discovery
0.6645 Remote Similarity NPD2424 Discontinued
0.6643 Remote Similarity NPD5846 Approved
0.6643 Remote Similarity NPD6516 Phase 2
0.6643 Remote Similarity NPD5238 Clinical (unspecified phase)
0.6641 Remote Similarity NPD3020 Approved
0.6627 Remote Similarity NPD7993 Clinical (unspecified phase)
0.6625 Remote Similarity NPD1934 Approved
0.6623 Remote Similarity NPD2935 Discontinued
0.6623 Remote Similarity NPD1551 Phase 2
0.662 Remote Similarity NPD1481 Phase 2
0.6619 Remote Similarity NPD1894 Discontinued
0.6603 Remote Similarity NPD8389 Clinical (unspecified phase)
0.6603 Remote Similarity NPD7004 Clinical (unspecified phase)
0.6601 Remote Similarity NPD5698 Clinical (unspecified phase)
0.6597 Remote Similarity NPD2797 Approved
0.6597 Remote Similarity NPD1203 Approved
0.6596 Remote Similarity NPD3847 Discontinued
0.6596 Remote Similarity NPD3496 Discontinued
0.6594 Remote Similarity NPD9493 Approved
0.6584 Remote Similarity NPD7819 Suspended
0.6584 Remote Similarity NPD2977 Approved
0.6584 Remote Similarity NPD2978 Approved
0.6584 Remote Similarity NPD2393 Clinical (unspecified phase)
0.6581 Remote Similarity NPD7440 Discontinued
0.6579 Remote Similarity NPD2029 Clinical (unspecified phase)
0.6575 Remote Similarity NPD6832 Phase 2
0.6567 Remote Similarity NPD3022 Approved
0.6567 Remote Similarity NPD3021 Approved
0.6562 Remote Similarity NPD7615 Clinical (unspecified phase)
0.6561 Remote Similarity NPD7314 Clinical (unspecified phase)
0.6556 Remote Similarity NPD1510 Phase 2
0.6554 Remote Similarity NPD6663 Approved
0.6552 Remote Similarity NPD5647 Approved
0.6549 Remote Similarity NPD3092 Approved
0.6548 Remote Similarity NPD3751 Discontinued
0.6545 Remote Similarity NPD8127 Discontinued
0.6543 Remote Similarity NPD3817 Phase 2
0.6541 Remote Similarity NPD3455 Phase 2
0.6528 Remote Similarity NPD8651 Approved
0.6527 Remote Similarity NPD6168 Clinical (unspecified phase)
0.6527 Remote Similarity NPD6166 Phase 2
0.6527 Remote Similarity NPD6167 Clinical (unspecified phase)
0.6522 Remote Similarity NPD4198 Discontinued
0.6515 Remote Similarity NPD5048 Discontinued
0.6514 Remote Similarity NPD8397 Clinical (unspecified phase)
0.651 Remote Similarity NPD4140 Approved
0.6509 Remote Similarity NPD5844 Phase 1
0.6503 Remote Similarity NPD3882 Suspended
0.6503 Remote Similarity NPD7768 Phase 2
0.65 Remote Similarity NPD6599 Discontinued
0.65 Remote Similarity NPD7237 Clinical (unspecified phase)
0.6489 Remote Similarity NPD6647 Phase 2
0.6486 Remote Similarity NPD3268 Approved
0.6483 Remote Similarity NPD6362 Approved
0.6471 Remote Similarity NPD6004 Phase 3
0.6471 Remote Similarity NPD6005 Phase 3
0.6471 Remote Similarity NPD6006 Clinical (unspecified phase)
0.6471 Remote Similarity NPD6003 Clinical (unspecified phase)
0.6471 Remote Similarity NPD6002 Phase 3
0.6458 Remote Similarity NPD4659 Approved
0.6458 Remote Similarity NPD2983 Phase 2
0.6458 Remote Similarity NPD2982 Phase 2
0.6452 Remote Similarity NPD3400 Discontinued
0.6452 Remote Similarity NPD6398 Clinical (unspecified phase)
0.6448 Remote Similarity NPD7680 Approved
0.6448 Remote Similarity NPD7435 Discontinued
0.6447 Remote Similarity NPD4108 Discontinued
0.6443 Remote Similarity NPD6407 Approved
0.6443 Remote Similarity NPD6405 Approved
0.6442 Remote Similarity NPD8443 Clinical (unspecified phase)
0.6433 Remote Similarity NPD4357 Discontinued
0.6429 Remote Similarity NPD5958 Discontinued
0.6424 Remote Similarity NPD2492 Phase 1
0.6413 Remote Similarity NPD8319 Approved
0.6413 Remote Similarity NPD8320 Phase 1
0.6412 Remote Similarity NPD940 Approved
0.6412 Remote Similarity NPD846 Approved
0.6408 Remote Similarity NPD4626 Approved
0.6407 Remote Similarity NPD3787 Discontinued

Structure

External Identifiers

PubChem CID   10077800
ChEMBL   CHEMBL508200
ZINC  

Physicochemical Properties

Molecular Weight:  634.19
ALogP:  -3.7705
MLogP:  3.11
XLogP:  0.848
# Rotatable Bonds:  21
Polar Surface Area:  242.13
# H-Bond Aceptor:  13
# H-Bond Donor:  8
# Rings:  4
# Heavy Atoms:  45

Download Data

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Structure MOL file  
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Biological Activities  
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