Natural Product: NPC213711

Natural Product ID:  NPC213711
Common Name:   (-)-Dihydrocubebin
IUPAC Name:   (2S,3S)-2,3-bis(1,3-benzodioxol-5-ylmethyl)butane-1,4-diol
Synonyms:  
Molecular Formula:   C20H22O6
Standard InCHIKey:  JKCVMTYNARDGET-HZPDHXFCSA-N
Standard InCHI:  InChI=1S/C20H22O6/c21-9-15(5-13-1-3-17-19(7-13)25-11-23-17)16(10-22)6-14-2-4-18-20(8-14)26-12-24-18/h1-4,7-8,15-16,21-22H,5-6,9-12H2/t15-,16-/m1/s1
Canonical SMILES:  OC[C@H]([C@H](Cc1ccc2c(c1)OCO2)CO)Cc1ccc2c(c1)OCO2
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO16302 Piper guineense Species Piperaceae Eukaryota TCMID*
NPO14112 Uncaria rhynchophylla Species Rubiaceae Eukaryota TCMID*
NPO11169 Piper cubeba Species Piperaceae Eukaryota TCMID*
NPO11169 Piper cubeba Species Piperaceae Eukaryota HerDing*
NPO14112 Uncaria rhynchophylla Species Rubiaceae Eukaryota HerDing*
NPO16302 Piper guineense Species Piperaceae Eukaryota HerDing*
NPO20527 Piper sanguineispicum Species Piperaceae Eukaryota Leaves PMID[20954722]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT81 Cell Line A549 Homo sapiens IC50 = 75550 nM 26916436
NPT111 Cell Line K562 Homo sapiens IC50 = 30170 nM 26916436
NPT2245 Cell Line SiHa Homo sapiens IC50 > 100000 nM 26916436
NPT91 Cell Line KB Homo sapiens IC50 = 7820 nM 26916436
NPT2 Others Unspecified IC50 = 85320 nM 26916436
NPT139 Cell Line HT-29 Homo sapiens IC50 > 100000 nM 26916436

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC213711 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC40352
0.9675 High Similarity NPC171550
0.9675 High Similarity NPC134764
0.952 High Similarity NPC219671
0.952 High Similarity NPC259742
0.952 High Similarity NPC104077
0.952 High Similarity NPC147616
0.9444 High Similarity NPC169973
0.9417 High Similarity NPC80241
0.9417 High Similarity NPC301641
0.937 High Similarity NPC47181
0.9297 High Similarity NPC18576
0.9274 High Similarity NPC158737
0.9262 High Similarity NPC249788
0.925 High Similarity NPC344161
0.9213 High Similarity NPC106739
0.9206 High Similarity NPC275950
0.9206 High Similarity NPC181079
0.9206 High Similarity NPC173308
0.92 High Similarity NPC158471
0.92 High Similarity NPC226862
0.92 High Similarity NPC57119
0.92 High Similarity NPC165128
0.9194 High Similarity NPC274356
0.9154 High Similarity NPC469981
0.9154 High Similarity NPC185908
0.9147 High Similarity NPC150534
0.9147 High Similarity NPC142547
0.9147 High Similarity NPC135777
0.9141 High Similarity NPC196937
0.9134 High Similarity NPC476345
0.9127 High Similarity NPC476748
0.9084 High Similarity NPC156376
0.9083 High Similarity NPC474040
0.9062 High Similarity NPC471505
0.9055 High Similarity NPC233224
0.9055 High Similarity NPC271208
0.9008 High Similarity NPC101807
0.9008 High Similarity NPC283949
0.9 High Similarity NPC101624
0.9 High Similarity NPC184938
0.9 High Similarity NPC174191
0.8984 High Similarity NPC227160
0.8984 High Similarity NPC82111
0.8968 High Similarity NPC177167
0.8947 High Similarity NPC471908
0.8939 High Similarity NPC193666
0.8939 High Similarity NPC123526
0.8939 High Similarity NPC88640
0.8915 High Similarity NPC100223
0.8915 High Similarity NPC171928
0.8915 High Similarity NPC16830
0.8915 High Similarity NPC33611
0.8915 High Similarity NPC7744
0.8915 High Similarity NPC129687
0.8915 High Similarity NPC97316
0.8915 High Similarity NPC158526
0.8889 High Similarity NPC206882
0.8881 High Similarity NPC302506
0.8881 High Similarity NPC246947
0.8872 High Similarity NPC226547
0.8872 High Similarity NPC56091
0.8872 High Similarity NPC46591
0.8871 High Similarity NPC85488
0.8846 High Similarity NPC266848
0.8846 High Similarity NPC136750
0.8837 High Similarity NPC192255
0.8815 High Similarity NPC477898
0.8815 High Similarity NPC474808
0.881 High Similarity NPC17348
0.88 High Similarity NPC280704
0.88 High Similarity NPC317769
0.88 High Similarity NPC31344
0.8779 High Similarity NPC170779
0.8779 High Similarity NPC90083
0.877 High Similarity NPC474214
0.8769 High Similarity NPC261812
0.8769 High Similarity NPC227002
0.8769 High Similarity NPC65183
0.8769 High Similarity NPC72046
0.876 High Similarity NPC81067
0.876 High Similarity NPC9341
0.875 High Similarity NPC179521
0.875 High Similarity NPC84181
0.875 High Similarity NPC470084
0.8741 High Similarity NPC287124
0.8731 High Similarity NPC177868
0.873 High Similarity NPC34902
0.873 High Similarity NPC121783
0.873 High Similarity NPC18449
0.8722 High Similarity NPC474039
0.8712 High Similarity NPC189474
0.8712 High Similarity NPC474139
0.8712 High Similarity NPC236522
0.8702 High Similarity NPC205915
0.8702 High Similarity NPC112237
0.8699 High Similarity NPC474320
0.8692 High Similarity NPC161557
0.8692 High Similarity NPC7171
0.8692 High Similarity NPC115207
0.8692 High Similarity NPC158079
0.8692 High Similarity NPC40432
0.8692 High Similarity NPC228346
0.8692 High Similarity NPC27843
0.8686 High Similarity NPC22150
0.8686 High Similarity NPC38041
0.8686 High Similarity NPC279298
0.8682 High Similarity NPC475875
0.8676 High Similarity NPC265154
0.8676 High Similarity NPC298317
0.8676 High Similarity NPC255566
0.8667 High Similarity NPC282291
0.8667 High Similarity NPC472711
0.8667 High Similarity NPC166137
0.8667 High Similarity NPC165106
0.8657 High Similarity NPC9068
0.864 High Similarity NPC57268
0.864 High Similarity NPC216929
0.864 High Similarity NPC65933
0.864 High Similarity NPC312713
0.864 High Similarity NPC126935
0.864 High Similarity NPC172676
0.8636 High Similarity NPC19890
0.8636 High Similarity NPC110958
0.8636 High Similarity NPC31530
0.8629 High Similarity NPC242885
0.8629 High Similarity NPC95614
0.8629 High Similarity NPC232316
0.8629 High Similarity NPC56214
0.8629 High Similarity NPC165133
0.8629 High Similarity NPC117780
0.8629 High Similarity NPC227217
0.8626 High Similarity NPC207400
0.8626 High Similarity NPC181049
0.8623 High Similarity NPC205796
0.8623 High Similarity NPC276753
0.8623 High Similarity NPC241846
0.8623 High Similarity NPC112861
0.8623 High Similarity NPC93610
0.8623 High Similarity NPC3982
0.8615 High Similarity NPC184814
0.8615 High Similarity NPC42300
0.8615 High Similarity NPC242807
0.8615 High Similarity NPC187998
0.8615 High Similarity NPC153739
0.8615 High Similarity NPC145305
0.8615 High Similarity NPC63574
0.8615 High Similarity NPC92164
0.8615 High Similarity NPC257582
0.8615 High Similarity NPC241522
0.8615 High Similarity NPC77040
0.8615 High Similarity NPC174495
0.8615 High Similarity NPC64201
0.8613 High Similarity NPC141569
0.8613 High Similarity NPC477701
0.8613 High Similarity NPC239254
0.8613 High Similarity NPC166884
0.8613 High Similarity NPC172171
0.8605 High Similarity NPC184733
0.8605 High Similarity NPC45774
0.8605 High Similarity NPC282703
0.8605 High Similarity NPC11258
0.8605 High Similarity NPC21867
0.8605 High Similarity NPC129570
0.8605 High Similarity NPC128208
0.8603 High Similarity NPC52664
0.8571 High Similarity NPC31279
0.8571 High Similarity NPC148893
0.8571 High Similarity NPC49235
0.8571 High Similarity NPC25333
0.8561 High Similarity NPC58585
0.856 High Similarity NPC207613
0.8551 High Similarity NPC475868
0.8551 High Similarity NPC469586
0.8551 High Similarity NPC180953
0.8551 High Similarity NPC18979
0.855 High Similarity NPC277804
0.8548 High Similarity NPC281298
0.8548 High Similarity NPC310338
0.854 High Similarity NPC12728
0.854 High Similarity NPC470950
0.854 High Similarity NPC185307
0.854 High Similarity NPC185071
0.8527 High Similarity NPC5428
0.8527 High Similarity NPC118533
0.8527 High Similarity NPC165045
0.8525 High Similarity NPC47194
0.8525 High Similarity NPC473264
0.8525 High Similarity NPC475815
0.8516 High Similarity NPC148627
0.8507 High Similarity NPC121651
0.8507 High Similarity NPC197166
0.8507 High Similarity NPC25695
0.8507 High Similarity NPC172818
0.8507 High Similarity NPC11453
0.85 High Similarity NPC304048
0.85 High Similarity NPC226153
0.8496 Intermediate Similarity NPC476411
0.8492 Intermediate Similarity NPC324571
0.8492 Intermediate Similarity NPC54872

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC213711 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8667 High Similarity NPD5283 Phase 1
0.8548 High Similarity NPD1357 Approved
0.8492 Intermediate Similarity NPD3705 Approved
0.812 Intermediate Similarity NPD3027 Phase 3
0.7919 Intermediate Similarity NPD4967 Phase 2
0.7919 Intermediate Similarity NPD4966 Approved
0.7919 Intermediate Similarity NPD4965 Approved
0.7903 Intermediate Similarity NPD228 Approved
0.7902 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7887 Intermediate Similarity NPD5084 Clinical (unspecified phase)
0.7838 Intermediate Similarity NPD37 Approved
0.781 Intermediate Similarity NPD3619 Clinical (unspecified phase)
0.781 Intermediate Similarity NPD3620 Phase 2
0.7746 Intermediate Similarity NPD6674 Discontinued
0.7742 Intermediate Similarity NPD3022 Approved
0.7742 Intermediate Similarity NPD3021 Approved
0.7703 Intermediate Similarity NPD7028 Phase 2
0.7697 Intermediate Similarity NPD6234 Discontinued
0.7674 Intermediate Similarity NPD5536 Phase 2
0.7669 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.7661 Intermediate Similarity NPD2684 Approved
0.7656 Intermediate Similarity NPD7157 Approved
0.7597 Intermediate Similarity NPD7199 Phase 2
0.7574 Intermediate Similarity NPD2861 Phase 2
0.7569 Intermediate Similarity NPD4110 Phase 3
0.7569 Intermediate Similarity NPD4109 Clinical (unspecified phase)
0.7559 Intermediate Similarity NPD7843 Approved
0.7554 Intermediate Similarity NPD4060 Phase 1
0.7554 Intermediate Similarity NPD1613 Approved
0.7554 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.755 Intermediate Similarity NPD2977 Approved
0.755 Intermediate Similarity NPD2978 Approved
0.755 Intermediate Similarity NPD5563 Clinical (unspecified phase)
0.7537 Intermediate Similarity NPD3600 Clinical (unspecified phase)
0.7536 Intermediate Similarity NPD5109 Approved
0.7536 Intermediate Similarity NPD5111 Phase 2
0.7536 Intermediate Similarity NPD5110 Phase 2
0.7483 Intermediate Similarity NPD1375 Discontinued
0.7468 Intermediate Similarity NPD7228 Approved
0.7466 Intermediate Similarity NPD6783 Clinical (unspecified phase)
0.7465 Intermediate Similarity NPD4108 Discontinued
0.7448 Intermediate Similarity NPD6331 Phase 2
0.7413 Intermediate Similarity NPD2161 Phase 2
0.7407 Intermediate Similarity NPD2983 Phase 2
0.7407 Intermediate Similarity NPD2982 Phase 2
0.7391 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7389 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7388 Intermediate Similarity NPD1091 Approved
0.7379 Intermediate Similarity NPD4237 Approved
0.7379 Intermediate Similarity NPD4236 Phase 3
0.7376 Intermediate Similarity NPD5735 Approved
0.7376 Intermediate Similarity NPD3657 Discovery
0.7376 Intermediate Similarity NPD6355 Discontinued
0.7368 Intermediate Similarity NPD6516 Phase 2
0.7368 Intermediate Similarity NPD5846 Approved
0.7361 Intermediate Similarity NPD7266 Discontinued
0.7347 Intermediate Similarity NPD5058 Phase 3
0.7338 Intermediate Similarity NPD7095 Approved
0.7333 Intermediate Similarity NPD2981 Phase 2
0.7319 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7319 Intermediate Similarity NPD3018 Phase 2
0.7305 Intermediate Similarity NPD4140 Approved
0.7295 Intermediate Similarity NPD3020 Approved
0.7284 Intermediate Similarity NPD7240 Approved
0.7279 Intermediate Similarity NPD3685 Discontinued
0.7273 Intermediate Similarity NPD6895 Approved
0.7273 Intermediate Similarity NPD6896 Approved
0.7267 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7266 Intermediate Similarity NPD5752 Clinical (unspecified phase)
0.726 Intermediate Similarity NPD3060 Approved
0.726 Intermediate Similarity NPD5177 Phase 3
0.7252 Intermediate Similarity NPD709 Approved
0.7246 Intermediate Similarity NPD4624 Approved
0.7239 Intermediate Similarity NPD2668 Approved
0.7239 Intermediate Similarity NPD2667 Approved
0.7234 Intermediate Similarity NPD554 Clinical (unspecified phase)
0.7234 Intermediate Similarity NPD1726 Clinical (unspecified phase)
0.7226 Intermediate Similarity NPD1283 Approved
0.7222 Intermediate Similarity NPD6029 Clinical (unspecified phase)
0.7222 Intermediate Similarity NPD5588 Approved
0.7222 Intermediate Similarity NPD968 Approved
0.7222 Intermediate Similarity NPD6028 Clinical (unspecified phase)
0.7218 Intermediate Similarity NPD1182 Approved
0.7206 Intermediate Similarity NPD2232 Approved
0.7206 Intermediate Similarity NPD2235 Phase 2
0.7206 Intermediate Similarity NPD2233 Approved
0.7206 Intermediate Similarity NPD2230 Approved
0.7206 Intermediate Similarity NPD2231 Phase 2
0.7206 Intermediate Similarity NPD1840 Phase 2
0.7203 Intermediate Similarity NPD2492 Phase 1
0.7188 Intermediate Similarity NPD5451 Approved
0.7185 Intermediate Similarity NPD3847 Discontinued
0.7179 Intermediate Similarity NPD7975 Clinical (unspecified phase)
0.7164 Intermediate Similarity NPD5585 Approved
0.7162 Intermediate Similarity NPD5241 Discontinued
0.7154 Intermediate Similarity NPD1138 Approved
0.7154 Intermediate Similarity NPD5535 Approved
0.7153 Intermediate Similarity NPD5327 Phase 3
0.7153 Intermediate Similarity NPD7097 Phase 1
0.7143 Intermediate Similarity NPD4162 Approved
0.7143 Intermediate Similarity NPD4908 Phase 1
0.7143 Intermediate Similarity NPD3818 Discontinued
0.7132 Intermediate Similarity NPD1610 Phase 2
0.7123 Intermediate Similarity NPD5763 Approved
0.7123 Intermediate Similarity NPD5762 Approved
0.7122 Intermediate Similarity NPD6584 Phase 3
0.7121 Intermediate Similarity NPD6387 Discontinued
0.7121 Intermediate Similarity NPD6671 Approved
0.7111 Intermediate Similarity NPD5125 Phase 3
0.7111 Intermediate Similarity NPD5126 Approved
0.7111 Intermediate Similarity NPD4626 Approved
0.7105 Intermediate Similarity NPD1653 Approved
0.7101 Intermediate Similarity NPD2922 Phase 1
0.7086 Intermediate Similarity NPD7527 Clinical (unspecified phase)
0.7086 Intermediate Similarity NPD7526 Approved
0.7086 Intermediate Similarity NPD52 Approved
0.7083 Intermediate Similarity NPD6653 Approved
0.7083 Intermediate Similarity NPD6353 Approved
0.7077 Intermediate Similarity NPD1139 Approved
0.7077 Intermediate Similarity NPD1137 Approved
0.707 Intermediate Similarity NPD5604 Discontinued
0.7063 Intermediate Similarity NPD2238 Phase 2
0.7063 Intermediate Similarity NPD2979 Phase 3
0.7049 Intermediate Similarity NPD2859 Approved
0.7049 Intermediate Similarity NPD2860 Approved
0.7047 Intermediate Similarity NPD5307 Clinical (unspecified phase)
0.7042 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7042 Intermediate Similarity NPD6798 Discontinued
0.7042 Intermediate Similarity NPD5718 Phase 2
0.7037 Intermediate Similarity NPD1651 Approved
0.7037 Intermediate Similarity NPD5691 Approved
0.7034 Intermediate Similarity NPD4537 Clinical (unspecified phase)
0.7034 Intermediate Similarity NPD4538 Approved
0.7034 Intermediate Similarity NPD4536 Approved
0.7032 Intermediate Similarity NPD7945 Clinical (unspecified phase)
0.7031 Intermediate Similarity NPD290 Approved
0.7031 Intermediate Similarity NPD1358 Approved
0.7029 Intermediate Similarity NPD1669 Approved
0.7027 Intermediate Similarity NPD5698 Clinical (unspecified phase)
0.702 Intermediate Similarity NPD4739 Approved
0.7007 Intermediate Similarity NPD1281 Approved
0.6993 Remote Similarity NPD6233 Phase 2
0.6993 Remote Similarity NPD2674 Phase 3
0.6988 Remote Similarity NPD7281 Phase 3
0.6988 Remote Similarity NPD7280 Phase 3
0.6986 Remote Similarity NPD5960 Phase 3
0.6985 Remote Similarity NPD3095 Discontinued
0.698 Remote Similarity NPD6658 Clinical (unspecified phase)
0.6978 Remote Similarity NPD8651 Approved
0.6974 Remote Similarity NPD5261 Clinical (unspecified phase)
0.6967 Remote Similarity NPD2934 Approved
0.6967 Remote Similarity NPD2933 Approved
0.6966 Remote Similarity NPD2157 Approved
0.6963 Remote Similarity NPD1894 Discontinued
0.6963 Remote Similarity NPD3091 Approved
0.6959 Remote Similarity NPD5958 Discontinued
0.6959 Remote Similarity NPD7037 Approved
0.6959 Remote Similarity NPD4664 Clinical (unspecified phase)
0.6957 Remote Similarity NPD1608 Approved
0.6953 Remote Similarity NPD3134 Approved
0.6948 Remote Similarity NPD4005 Discontinued
0.6948 Remote Similarity NPD7458 Discontinued
0.6946 Remote Similarity NPD7090 Clinical (unspecified phase)
0.6944 Remote Similarity NPD5837 Clinical (unspecified phase)
0.6944 Remote Similarity NPD1558 Phase 1
0.6939 Remote Similarity NPD2438 Suspended
0.6939 Remote Similarity NPD6032 Approved
0.6937 Remote Similarity NPD8127 Discontinued
0.6934 Remote Similarity NPD3496 Discontinued
0.6929 Remote Similarity NPD3094 Phase 2
0.6923 Remote Similarity NPD3145 Approved
0.6923 Remote Similarity NPD7243 Clinical (unspecified phase)
0.6923 Remote Similarity NPD3144 Approved
0.6918 Remote Similarity NPD7119 Phase 2
0.6908 Remote Similarity NPD4123 Phase 3
0.6906 Remote Similarity NPD6583 Phase 3
0.6906 Remote Similarity NPD6582 Phase 2
0.6906 Remote Similarity NPD4359 Approved
0.6905 Remote Similarity NPD291 Approved
0.6905 Remote Similarity NPD8055 Clinical (unspecified phase)
0.6894 Remote Similarity NPD821 Approved
0.6887 Remote Similarity NPD7124 Phase 2
0.6884 Remote Similarity NPD3092 Approved
0.6883 Remote Similarity NPD4210 Discontinued
0.6879 Remote Similarity NPD6917 Clinical (unspecified phase)
0.6879 Remote Similarity NPD558 Phase 2
0.6879 Remote Similarity NPD8455 Phase 2
0.6879 Remote Similarity NPD2798 Approved
0.6875 Remote Similarity NPD4062 Phase 3
0.6867 Remote Similarity NPD4628 Phase 3
0.6867 Remote Similarity NPD7685 Pre-registration
0.6853 Remote Similarity NPD2669 Clinical (unspecified phase)
0.6849 Remote Similarity NPD4097 Suspended
0.6849 Remote Similarity NPD4579 Clinical (unspecified phase)
0.6848 Remote Similarity NPD7074 Phase 3
0.6846 Remote Similarity NPD2808 Discontinued
0.6838 Remote Similarity NPD1548 Phase 1
0.6835 Remote Similarity NPD6374 Clinical (unspecified phase)
0.6835 Remote Similarity NPD2358 Clinical (unspecified phase)
0.6831 Remote Similarity NPD9494 Approved

Structure

External Identifiers

PubChem CID   11428306
ChEMBL   CHEMBL1641904
ZINC  

Physicochemical Properties

Molecular Weight:  358.14
ALogP:  -1.4726
MLogP:  3
XLogP:  2.6
# Rotatable Bonds:  9
Polar Surface Area:  77.38
# H-Bond Aceptor:  2
# H-Bond Donor:  2
# Rings:  4
# Heavy Atoms:  26

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
Similar NPs/Drugs