Natural Product: NPC179809

Natural Product ID:  NPC179809
Common Name:   Xylopimarane
IUPAC Name:   (2R,3R,4S,5S,6R)-2-[[(7R,8S)-7-ethenyl-8,10-dihydroxy-1,1,7-trimethyl-2,3,4,5,6,8-hexahydrophenanthren-9-yl]oxy]-6-(hydroxymethyl)oxane-3,4,5-triol
Synonyms:   Xylopimarane
Molecular Formula:   C25H36O8
Standard InCHIKey:  GQECNZJTMLRIAM-DWRPHZCTSA-N
Standard InCHI:  InChI=1S/C25H36O8/c1-5-25(4)10-8-12-13-7-6-9-24(2,3)16(13)18(28)21(15(12)22(25)31)33-23-20(30)19(29)17(27)14(11-26)32-23/h5,14,17,19-20,22-23,26-31H,1,6-11H2,2-4H3/t14-,17-,19+,20-,22-,23-,25+/m1/s1
Canonical SMILES:  OC[C@H]1O[C@H](Oc2c3c(CC[C@]([C@@H]3O)(C)C=C)c3c(c2O)C(C)(C)CCC3)[C@@H]([C@H]([C@@H]1O)O)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO30237 Xylaria Genus Xylariaceae Eukaryota mycelium PMID[21226484]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT91 Cell Line KB Homo sapiens IC50 = 1000 nM 21226484
NPT83 Cell Line MCF7 Homo sapiens IC50 = 13000 nM 21226484
NPT639 Cell Line NCI-H187 Homo sapiens IC50 = 65000 nM 21226484
NPT189 Cell Line Vero Chlorocebus aethiops IC50 = 41000 nM 21226484

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC179809 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9583 High Similarity NPC183380
0.9437 High Similarity NPC133251
0.9388 High Similarity NPC200645
0.9388 High Similarity NPC106669
0.9388 High Similarity NPC475227
0.9247 High Similarity NPC181452
0.9247 High Similarity NPC220006
0.9247 High Similarity NPC474893
0.9247 High Similarity NPC475940
0.9178 High Similarity NPC290902
0.9178 High Similarity NPC117788
0.9178 High Similarity NPC291326
0.9178 High Similarity NPC474856
0.9178 High Similarity NPC474834
0.9167 High Similarity NPC164183
0.9116 High Similarity NPC44452
0.906 High Similarity NPC21902
0.906 High Similarity NPC474442
0.8973 High Similarity NPC286245
0.8973 High Similarity NPC272619
0.8926 High Similarity NPC225815
0.8926 High Similarity NPC182368
0.8926 High Similarity NPC9933
0.8926 High Similarity NPC214326
0.8926 High Similarity NPC260781
0.8926 High Similarity NPC218041
0.8926 High Similarity NPC145979
0.8926 High Similarity NPC469707
0.8926 High Similarity NPC185955
0.8926 High Similarity NPC469706
0.8919 High Similarity NPC130959
0.8919 High Similarity NPC303013
0.8919 High Similarity NPC474795
0.8919 High Similarity NPC474940
0.8919 High Similarity NPC159697
0.8904 High Similarity NPC471065
0.8904 High Similarity NPC253015
0.8851 High Similarity NPC31325
0.8851 High Similarity NPC114505
0.8851 High Similarity NPC275284
0.8851 High Similarity NPC213074
0.8851 High Similarity NPC15956
0.8851 High Similarity NPC193473
0.8851 High Similarity NPC224674
0.8846 High Similarity NPC25889
0.875 High Similarity NPC78809
0.8742 High Similarity NPC2745
0.8716 High Similarity NPC43508
0.8716 High Similarity NPC475096
0.8716 High Similarity NPC476301
0.8684 High Similarity NPC157783
0.8681 High Similarity NPC68292
0.8675 High Similarity NPC158784
0.8675 High Similarity NPC195561
0.8675 High Similarity NPC472709
0.8675 High Similarity NPC98624
0.8675 High Similarity NPC472710
0.8667 High Similarity NPC473876
0.8658 High Similarity NPC125755
0.8658 High Similarity NPC190714
0.8658 High Similarity NPC99515
0.8649 High Similarity NPC473845
0.8649 High Similarity NPC79429
0.8649 High Similarity NPC471667
0.8649 High Similarity NPC217635
0.863 High Similarity NPC106944
0.8621 High Similarity NPC470413
0.8621 High Similarity NPC138738
0.8618 High Similarity NPC302915
0.86 High Similarity NPC227902
0.86 High Similarity NPC474397
0.8591 High Similarity NPC277867
0.8591 High Similarity NPC161700
0.8581 High Similarity NPC185307
0.8581 High Similarity NPC470950
0.8581 High Similarity NPC46092
0.8562 High Similarity NPC325860
0.8552 High Similarity NPC199459
0.8552 High Similarity NPC52277
0.8552 High Similarity NPC177035
0.8543 High Similarity NPC175976
0.8543 High Similarity NPC270751
0.8543 High Similarity NPC212142
0.8533 High Similarity NPC233980
0.8523 High Similarity NPC469313
0.8523 High Similarity NPC473045
0.8523 High Similarity NPC76176
0.8523 High Similarity NPC129417
0.8523 High Similarity NPC168579
0.8523 High Similarity NPC138227
0.8523 High Similarity NPC283995
0.8523 High Similarity NPC25292
0.8523 High Similarity NPC470235
0.8514 High Similarity NPC60249
0.8514 High Similarity NPC189115
0.8514 High Similarity NPC475084
0.8514 High Similarity NPC469559
0.8514 High Similarity NPC253878
0.8514 High Similarity NPC48309
0.8514 High Similarity NPC476356
0.8493 Intermediate Similarity NPC304152
0.8477 Intermediate Similarity NPC473480
0.8477 Intermediate Similarity NPC39657
0.8477 Intermediate Similarity NPC15538
0.8472 Intermediate Similarity NPC227719
0.8471 Intermediate Similarity NPC478269
0.8467 Intermediate Similarity NPC279298
0.8467 Intermediate Similarity NPC22150
0.8467 Intermediate Similarity NPC18979
0.8467 Intermediate Similarity NPC38041
0.8456 Intermediate Similarity NPC37793
0.8456 Intermediate Similarity NPC473044
0.8456 Intermediate Similarity NPC113680
0.8456 Intermediate Similarity NPC278961
0.8446 Intermediate Similarity NPC76871
0.8446 Intermediate Similarity NPC265075
0.8446 Intermediate Similarity NPC210192
0.8446 Intermediate Similarity NPC469661
0.8446 Intermediate Similarity NPC472711
0.8446 Intermediate Similarity NPC471414
0.8421 Intermediate Similarity NPC280945
0.8418 Intermediate Similarity NPC100936
0.8418 Intermediate Similarity NPC1253
0.8414 Intermediate Similarity NPC35731
0.8414 Intermediate Similarity NPC87696
0.8414 Intermediate Similarity NPC187194
0.8414 Intermediate Similarity NPC476411
0.8411 Intermediate Similarity NPC112861
0.84 Intermediate Similarity NPC473108
0.84 Intermediate Similarity NPC50250
0.8389 Intermediate Similarity NPC472714
0.8389 Intermediate Similarity NPC5262
0.8377 Intermediate Similarity NPC473621
0.8366 Intermediate Similarity NPC286235
0.8366 Intermediate Similarity NPC55158
0.8366 Intermediate Similarity NPC51328
0.8365 Intermediate Similarity NPC478267
0.8356 Intermediate Similarity NPC79957
0.8354 Intermediate Similarity NPC185231
0.8344 Intermediate Similarity NPC90645
0.8344 Intermediate Similarity NPC472457
0.8344 Intermediate Similarity NPC228357
0.8333 Intermediate Similarity NPC252169
0.8333 Intermediate Similarity NPC477898
0.8333 Intermediate Similarity NPC166168
0.8333 Intermediate Similarity NPC65942
0.8333 Intermediate Similarity NPC312341
0.8333 Intermediate Similarity NPC248307
0.8333 Intermediate Similarity NPC472451
0.8323 Intermediate Similarity NPC160196
0.8323 Intermediate Similarity NPC322899
0.8323 Intermediate Similarity NPC44192
0.8323 Intermediate Similarity NPC226108
0.8323 Intermediate Similarity NPC272552
0.8323 Intermediate Similarity NPC134911
0.8323 Intermediate Similarity NPC302610
0.8323 Intermediate Similarity NPC476452
0.8323 Intermediate Similarity NPC469944
0.8323 Intermediate Similarity NPC46283
0.8322 Intermediate Similarity NPC35216
0.8312 Intermediate Similarity NPC475224
0.8312 Intermediate Similarity NPC477612
0.8311 Intermediate Similarity NPC212770
0.8311 Intermediate Similarity NPC32630
0.8311 Intermediate Similarity NPC98777
0.8301 Intermediate Similarity NPC248132
0.8301 Intermediate Similarity NPC95990
0.8301 Intermediate Similarity NPC130449
0.8289 Intermediate Similarity NPC260397
0.8289 Intermediate Similarity NPC199928
0.8288 Intermediate Similarity NPC478085
0.8278 Intermediate Similarity NPC472713
0.8278 Intermediate Similarity NPC118385
0.8278 Intermediate Similarity NPC471063
0.8278 Intermediate Similarity NPC473046
0.8278 Intermediate Similarity NPC84181
0.8278 Intermediate Similarity NPC472712
0.8278 Intermediate Similarity NPC187774
0.8276 Intermediate Similarity NPC59239
0.8269 Intermediate Similarity NPC150442
0.8269 Intermediate Similarity NPC306267
0.8269 Intermediate Similarity NPC20050
0.8267 Intermediate Similarity NPC246947
0.8267 Intermediate Similarity NPC323126
0.8264 Intermediate Similarity NPC80600
0.8264 Intermediate Similarity NPC472024
0.8255 Intermediate Similarity NPC198038
0.8253 Intermediate Similarity NPC475054
0.8247 Intermediate Similarity NPC470208
0.8247 Intermediate Similarity NPC295573
0.8247 Intermediate Similarity NPC211561
0.8243 Intermediate Similarity NPC65530
0.8243 Intermediate Similarity NPC134260
0.8243 Intermediate Similarity NPC59324
0.8224 Intermediate Similarity NPC469586
0.8217 Intermediate Similarity NPC80918
0.8217 Intermediate Similarity NPC188578
0.8217 Intermediate Similarity NPC159922
0.8212 Intermediate Similarity NPC474104
0.8212 Intermediate Similarity NPC81638

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC179809 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9225 High Similarity NPD6674 Discontinued
0.8 Intermediate Similarity NPD7228 Approved
0.7905 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7905 Intermediate Similarity NPD1613 Approved
0.7791 Intermediate Similarity NPD6234 Discontinued
0.7785 Intermediate Similarity NPD1653 Approved
0.7727 Intermediate Similarity NPD5698 Clinical (unspecified phase)
0.7712 Intermediate Similarity NPD7266 Discontinued
0.7703 Intermediate Similarity NPD3027 Phase 3
0.7702 Intermediate Similarity NPD37 Approved
0.7692 Intermediate Similarity NPD7074 Phase 3
0.7669 Intermediate Similarity NPD4965 Approved
0.7669 Intermediate Similarity NPD4967 Phase 2
0.7669 Intermediate Similarity NPD4966 Approved
0.7667 Intermediate Similarity NPD3620 Phase 2
0.7667 Intermediate Similarity NPD3619 Clinical (unspecified phase)
0.7639 Intermediate Similarity NPD1091 Approved
0.7635 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7633 Intermediate Similarity NPD7054 Approved
0.7588 Intermediate Similarity NPD7472 Approved
0.7568 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7546 Intermediate Similarity NPD8455 Phase 2
0.7533 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7533 Intermediate Similarity NPD6410 Clinical (unspecified phase)
0.7529 Intermediate Similarity NPD5844 Phase 1
0.75 Intermediate Similarity NPD7240 Approved
0.7485 Intermediate Similarity NPD7199 Phase 2
0.7467 Intermediate Similarity NPD4625 Phase 3
0.7414 Intermediate Similarity NPD8312 Approved
0.7414 Intermediate Similarity NPD8313 Approved
0.74 Intermediate Similarity NPD4908 Phase 1
0.7399 Intermediate Similarity NPD7251 Discontinued
0.7397 Intermediate Similarity NPD3705 Approved
0.7386 Intermediate Similarity NPD5735 Approved
0.7368 Intermediate Similarity NPD3818 Discontinued
0.7365 Intermediate Similarity NPD6696 Suspended
0.7365 Intermediate Similarity NPD8651 Approved
0.7356 Intermediate Similarity NPD7808 Phase 3
0.7345 Intermediate Similarity NPD7906 Approved
0.7341 Intermediate Similarity NPD6797 Phase 2
0.732 Intermediate Similarity NPD4060 Phase 1
0.7303 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7299 Intermediate Similarity NPD6559 Discontinued
0.7294 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7278 Intermediate Similarity NPD8127 Discontinued
0.726 Intermediate Similarity NPD5126 Approved
0.726 Intermediate Similarity NPD5125 Phase 3
0.7257 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7251 Intermediate Similarity NPD6166 Phase 2
0.7251 Intermediate Similarity NPD27 Approved
0.7251 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7251 Intermediate Similarity NPD2489 Approved
0.7251 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7246 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7235 Intermediate Similarity NPD3051 Approved
0.7232 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7229 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.7225 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.7222 Intermediate Similarity NPD7340 Approved
0.7222 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7219 Intermediate Similarity NPD2861 Phase 2
0.7216 Intermediate Similarity NPD7310 Approved
0.7216 Intermediate Similarity NPD7313 Approved
0.7216 Intermediate Similarity NPD7311 Approved
0.7216 Intermediate Similarity NPD7312 Approved
0.7202 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.7193 Intermediate Similarity NPD2969 Approved
0.7193 Intermediate Similarity NPD2970 Approved
0.7192 Intermediate Similarity NPD1357 Approved
0.7191 Intermediate Similarity NPD4663 Approved
0.7175 Intermediate Similarity NPD7309 Approved
0.7174 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7169 Intermediate Similarity NPD1934 Approved
0.7161 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.7161 Intermediate Similarity NPD5124 Phase 1
0.716 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.716 Intermediate Similarity NPD4160 Clinical (unspecified phase)
0.7153 Intermediate Similarity NPD7157 Approved
0.7152 Intermediate Similarity NPD5762 Approved
0.7152 Intermediate Similarity NPD5763 Approved
0.7152 Intermediate Similarity NPD6917 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD5058 Phase 3
0.7135 Intermediate Similarity NPD6232 Discontinued
0.7133 Intermediate Similarity NPD1398 Phase 1
0.7119 Intermediate Similarity NPD4577 Approved
0.7119 Intermediate Similarity NPD4578 Approved
0.7112 Intermediate Similarity NPD7680 Approved
0.711 Intermediate Similarity NPD7473 Discontinued
0.7097 Intermediate Similarity NPD4140 Approved
0.7078 Intermediate Similarity NPD7985 Registered
0.7076 Intermediate Similarity NPD6959 Discontinued
0.707 Intermediate Similarity NPD7097 Phase 1
0.7067 Intermediate Similarity NPD5327 Phase 3
0.7067 Intermediate Similarity NPD4749 Approved
0.7047 Intermediate Similarity NPD1610 Phase 2
0.7035 Intermediate Similarity NPD3787 Discontinued
0.7024 Intermediate Similarity NPD1465 Phase 2
0.7019 Intermediate Similarity NPD7982 Clinical (unspecified phase)
0.7006 Intermediate Similarity NPD4097 Suspended
0.7006 Intermediate Similarity NPD7685 Pre-registration
0.6981 Remote Similarity NPD6099 Approved
0.6981 Remote Similarity NPD6100 Approved
0.6974 Remote Similarity NPD3094 Phase 2
0.6962 Remote Similarity NPD4537 Clinical (unspecified phase)
0.6962 Remote Similarity NPD4536 Approved
0.6962 Remote Similarity NPD4538 Approved
0.6961 Remote Similarity NPD6841 Approved
0.6961 Remote Similarity NPD6843 Phase 3
0.6961 Remote Similarity NPD6842 Approved
0.6937 Remote Similarity NPD2029 Clinical (unspecified phase)
0.6936 Remote Similarity NPD6071 Discontinued
0.6918 Remote Similarity NPD4108 Discontinued
0.6914 Remote Similarity NPD6398 Clinical (unspecified phase)
0.6914 Remote Similarity NPD4628 Phase 3
0.6909 Remote Similarity NPD5261 Clinical (unspecified phase)
0.6903 Remote Similarity NPD7095 Approved
0.6899 Remote Similarity NPD6353 Approved
0.689 Remote Similarity NPD6143 Clinical (unspecified phase)
0.6889 Remote Similarity NPD7090 Clinical (unspecified phase)
0.6886 Remote Similarity NPD5808 Clinical (unspecified phase)
0.6886 Remote Similarity NPD7458 Discontinued
0.6882 Remote Similarity NPD2563 Approved
0.6882 Remote Similarity NPD2560 Approved
0.6878 Remote Similarity NPD6823 Phase 2
0.6875 Remote Similarity NPD3751 Discontinued
0.6875 Remote Similarity NPD228 Approved
0.6871 Remote Similarity NPD2677 Approved
0.6862 Remote Similarity NPD6782 Approved
0.6862 Remote Similarity NPD6780 Approved
0.6862 Remote Similarity NPD6778 Approved
0.6862 Remote Similarity NPD6777 Approved
0.6862 Remote Similarity NPD6781 Approved
0.6862 Remote Similarity NPD6779 Approved
0.6862 Remote Similarity NPD6776 Approved
0.6859 Remote Similarity NPD1699 Clinical (unspecified phase)
0.6856 Remote Similarity NPD7783 Phase 2
0.6856 Remote Similarity NPD7782 Clinical (unspecified phase)
0.6854 Remote Similarity NPD7993 Clinical (unspecified phase)
0.6845 Remote Similarity NPD4380 Phase 2
0.6842 Remote Similarity NPD3600 Clinical (unspecified phase)
0.6842 Remote Similarity NPD7435 Discontinued
0.6835 Remote Similarity NPD3657 Discovery
0.6828 Remote Similarity NPD7843 Approved
0.6824 Remote Similarity NPD2801 Approved
0.6824 Remote Similarity NPD7819 Suspended
0.6821 Remote Similarity NPD3092 Approved
0.6821 Remote Similarity NPD4666 Phase 3
0.6813 Remote Similarity NPD5588 Approved
0.6813 Remote Similarity NPD5960 Phase 3
0.681 Remote Similarity NPD8166 Discontinued
0.681 Remote Similarity NPD4109 Clinical (unspecified phase)
0.681 Remote Similarity NPD4110 Phase 3
0.6803 Remote Similarity NPD6671 Approved
0.6802 Remote Similarity NPD7075 Discontinued
0.6802 Remote Similarity NPD7832 Clinical (unspecified phase)
0.6802 Remote Similarity NPD7833 Phase 2
0.6802 Remote Similarity NPD7831 Phase 2
0.6802 Remote Similarity NPD7975 Clinical (unspecified phase)
0.68 Remote Similarity NPD4626 Approved
0.6796 Remote Similarity NPD8053 Approved
0.6796 Remote Similarity NPD8054 Approved
0.6788 Remote Similarity NPD7040 Clinical (unspecified phase)
0.6788 Remote Similarity NPD7041 Phase 2
0.6784 Remote Similarity NPD8443 Clinical (unspecified phase)
0.6781 Remote Similarity NPD5283 Phase 1
0.6779 Remote Similarity NPD1548 Phase 1
0.6774 Remote Similarity NPD3018 Phase 2
0.6763 Remote Similarity NPD5709 Phase 3
0.6761 Remote Similarity NPD4481 Phase 3
0.6754 Remote Similarity NPD7697 Approved
0.6754 Remote Similarity NPD7698 Approved
0.6754 Remote Similarity NPD7696 Phase 3
0.6753 Remote Similarity NPD8151 Discontinued
0.6747 Remote Similarity NPD2532 Approved
0.6747 Remote Similarity NPD2534 Approved
0.6747 Remote Similarity NPD7446 Clinical (unspecified phase)
0.6747 Remote Similarity NPD2533 Approved
0.6746 Remote Similarity NPD7028 Phase 2
0.6737 Remote Similarity NPD2494 Approved
0.6737 Remote Similarity NPD2493 Approved
0.6733 Remote Similarity NPD5691 Approved
0.6728 Remote Similarity NPD1375 Discontinued
0.6725 Remote Similarity NPD2977 Approved
0.6725 Remote Similarity NPD2978 Approved
0.6725 Remote Similarity NPD5929 Approved
0.6724 Remote Similarity NPD5494 Approved
0.6719 Remote Similarity NPD7871 Phase 2
0.6719 Remote Similarity NPD7870 Phase 2
0.6711 Remote Similarity NPD7644 Approved
0.6706 Remote Similarity NPD6072 Discontinued
0.6703 Remote Similarity NPD2490 Approved
0.6703 Remote Similarity NPD2488 Approved
0.6701 Remote Similarity NPD7701 Phase 2
0.6687 Remote Similarity NPD2424 Discontinued
0.6686 Remote Similarity NPD3817 Phase 2
0.6684 Remote Similarity NPD6535 Approved
0.6684 Remote Similarity NPD6534 Approved
0.6667 Remote Similarity NPD3091 Approved
0.6667 Remote Similarity NPD7699 Phase 2
0.6667 Remote Similarity NPD2684 Approved

Structure

External Identifiers

PubChem CID   51042636
ChEMBL   CHEMBL1689194
ZINC  

Physicochemical Properties

Molecular Weight:  464.24
ALogP:  -1.3227
MLogP:  3.33
XLogP:  2.587
# Rotatable Bonds:  13
Polar Surface Area:  139.84
# H-Bond Aceptor:  6
# H-Bond Donor:  6
# Rings:  4
# Heavy Atoms:  33

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
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