Natural Product: NPC117572

Natural Product ID:  NPC117572
Common Name:   Icosapent
IUPAC Name:   (5Z,8Z,11Z,14Z,17Z)-icosa-5,8,11,14,17-pentaenoic acid
Synonyms:   eicosapentaenoic acid; Icosapent; Omega-3 marine triglycerides
Molecular Formula:   C20H30O2
Standard InCHIKey:  JAZBEHYOTPTENJ-JLNKQSITSA-N
Standard InCHI:  InChI=1S/C20H30O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20(21)22/h3-4,6-7,9-10,12-13,15-16H,2,5,8,11,14,17-19H2,1H3,(H,21,22)/b4-3-,7-6-,10-9-,13-12-,16-15-
Canonical SMILES:  CC/C=CC/C=CC/C=CC/C=CC/C=CCCCC(=O)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   BGC0000861;BGC0000862;BGC0000863;BGC0000865 ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO21324 Plantago major Species Plantaginaceae Eukaryota Whole Plant the surroundings of Uppsala, Sweden 1998-SEP PMID[11421736]
NPO21324 Plantago major Species Plantaginaceae Eukaryota Entire plants the surroundings of Uppsala, Sweden 1998-SEP PMID[11421736]
NPO20338 Mus musculus Species Muridae Eukaryota PMID[25518943]
NPO30323 Daphnia galeata Species Daphniidae Eukaryota Freshwater Biology,1997,38:731-738
NPO4573 Mortierella alpina Species Mortierellaceae Eukaryota PMID[9668087]
NPO19467 Aeglopsis chevalieri Species Rutaceae Eukaryota UNPD*
NPO8860 Hippospongia equina Species Spongiidae Eukaryota UNPD*
NPO21060 Hydnocarpus annamensis Species Achariaceae Eukaryota UNPD*
NPO29577 Arecae semen NA NA NA TCMSP*
NPO22715 Alpinia oxyphylla Species Zingiberaceae Eukaryota TM-MC*
NPO25443 Citrus reticulata Species Rutaceae Eukaryota TM-MC*
NPO10082 Citrus unshiu Species Rutaceae Eukaryota TM-MC*
NPO21275 Phoenix paludosa Species Arecaceae Eukaryota UNPD*
NPO1797 Homo sapiens Species Hominidae Eukaryota blood PMID[20671299]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT191 Organism Hepatitis C virus Hepatitis C virus EC50 = 36200 nM 17420205
NPT2 Others Unspecified Ratio IC50 = 0.5 11421736
NPT325 Individual Protein Cyclooxygenase-2 Ovis aries IC50 = 7100 nM 11421736
NPT1665 Individual Protein Cyclooxygenase-1 Bos taurus IC50 = 13000 nM 11421736
NPT677 Individual Protein Coagulation factor III Homo sapiens IC50 = 78000 nM 9834151
NPT863 Individual Protein Trypsin Sus scrofa IC50 > 200000 nM 9834151
NPT2 Others Unspecified IC50 = 300 nM 18459759
NPT441 Individual Protein Cytochrome P450 19A1 Homo sapiens Activity = 30.2 % 16643058
NPT441 Individual Protein Cytochrome P450 19A1 Homo sapiens IC50 = 53200 nM 16643058
NPT441 Individual Protein Cytochrome P450 19A1 Homo sapiens Activity = 137.6 % 16643058
NPT1038 Individual Protein Histone-lysine N-methyltransferase MLL Homo sapiens Potency = 50118.7 nM PubChem BioAssay data set
NPT94 Individual Protein Aldehyde dehydrogenase 1A1 Homo sapiens Potency = 39810.7 nM PubChem BioAssay data set
NPT53 Individual Protein 4'-phosphopantetheinyl transferase ffp Bacillus subtilis Potency = 70794.6 nM PubChem BioAssay data set
NPT53 Individual Protein 4'-phosphopantetheinyl transferase ffp Bacillus subtilis Potency = 89125.1 nM PubChem BioAssay data set
NPT5 Individual Protein Histone-lysine N-methyltransferase, H3 lysine-9 specific 3 Homo sapiens Potency 5011.9 nM PubChem BioAssay data set
NPT198 Individual Protein Vitamin D receptor Homo sapiens Potency 39810.7 nM PubChem BioAssay data set
NPT698 Individual Protein Regulator of G-protein signaling 4 Homo sapiens Potency 8436.8 nM PubChem BioAssay data set
NPT199 Individual Protein DNA polymerase kappa Homo sapiens Potency 11220.2 nM PubChem BioAssay data set
NPT444 Individual Protein Ubiquitin carboxyl-terminal hydrolase 1 Homo sapiens Potency 79432.8 nM PubChem BioAssay data set
NPT113 Cell Line RAW264.7 Mus musculus LD50 > 0.01 nM 21903399
NPT99 Individual Protein Peroxisome proliferator-activated receptor gamma Homo sapiens Kd = 2000 nM 22260081
NPT100 Individual Protein Glutaminase kidney isoform, mitochondrial Homo sapiens Potency 31622.8 nM PubChem BioAssay data set
NPT784 Cell Line MDA-MB-468 Homo sapiens EC50 > 100000 nM 22822908
NPT784 Cell Line MDA-MB-468 Homo sapiens IC50 > 100000 nM 22822908
NPT866 Individual Protein Peroxisome proliferator-activated receptor alpha Homo sapiens IC50 = 1100 nM 10.1007/s00044-008-9102-7
NPT106 Individual Protein Peroxisome proliferator-activated receptor delta Homo sapiens IC50 = 4000 nM 10.1007/s00044-012-0285-6
NPT99 Individual Protein Peroxisome proliferator-activated receptor gamma Homo sapiens IC50 = 1600 nM 10.1007/s00044-012-0285-6
NPT866 Individual Protein Peroxisome proliferator-activated receptor alpha Homo sapiens IC50 = 1100 nM 10.1007/s00044-012-0285-6
NPT2 Others Unspecified Potency 23715 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency 33498.3 nM PubChem BioAssay data set
NPT4030 Individual Protein Oxoeicosanoid receptor 1 Homo sapiens IC50 = 2000 nM 24351031
NPT153 Individual Protein Androgen Receptor Homo sapiens Potency 26832.5 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency 33491.5 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency 10682.2 nM PubChem BioAssay data set

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC117572 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9545 High Similarity NPC91495
0.9333 High Similarity NPC149821
0.9333 High Similarity NPC5413
0.913 High Similarity NPC59051
0.9111 High Similarity NPC207292
0.907 High Similarity NPC270796
0.8936 High Similarity NPC48162
0.8889 High Similarity NPC42304
0.875 High Similarity NPC92114
0.8571 High Similarity NPC36061
0.8571 High Similarity NPC294548
0.8571 High Similarity NPC1813
0.8571 High Similarity NPC321062
0.8571 High Similarity NPC70387
0.8571 High Similarity NPC139029
0.8542 High Similarity NPC284212
0.8542 High Similarity NPC28205
0.84 Intermediate Similarity NPC87564
0.84 Intermediate Similarity NPC85813
0.84 Intermediate Similarity NPC25417
0.84 Intermediate Similarity NPC6095
0.84 Intermediate Similarity NPC88966
0.84 Intermediate Similarity NPC322461
0.84 Intermediate Similarity NPC281972
0.84 Intermediate Similarity NPC424
0.84 Intermediate Similarity NPC32467
0.84 Intermediate Similarity NPC154245
0.84 Intermediate Similarity NPC290563
0.84 Intermediate Similarity NPC261831
0.8367 Intermediate Similarity NPC281245
0.8367 Intermediate Similarity NPC129458
0.8367 Intermediate Similarity NPC303765
0.8235 Intermediate Similarity NPC473863
0.8235 Intermediate Similarity NPC274290
0.82 Intermediate Similarity NPC10081
0.82 Intermediate Similarity NPC225066
0.8077 Intermediate Similarity NPC327388
0.8077 Intermediate Similarity NPC187777
0.8077 Intermediate Similarity NPC325977
0.8077 Intermediate Similarity NPC18951
0.8077 Intermediate Similarity NPC477201
0.8077 Intermediate Similarity NPC179764
0.7959 Intermediate Similarity NPC224227
0.7925 Intermediate Similarity NPC225929
0.7925 Intermediate Similarity NPC323597
0.7925 Intermediate Similarity NPC323436
0.7925 Intermediate Similarity NPC211752
0.7925 Intermediate Similarity NPC323498
0.7885 Intermediate Similarity NPC45626
0.7885 Intermediate Similarity NPC54766
0.78 Intermediate Similarity NPC178586
0.78 Intermediate Similarity NPC262968
0.7778 Intermediate Similarity NPC329819
0.7692 Intermediate Similarity NPC137538
0.7647 Intermediate Similarity NPC477779
0.7636 Intermediate Similarity NPC329249
0.7636 Intermediate Similarity NPC329550
0.7636 Intermediate Similarity NPC106851
0.7636 Intermediate Similarity NPC274927
0.7636 Intermediate Similarity NPC322002
0.7551 Intermediate Similarity NPC180534
0.7547 Intermediate Similarity NPC67367
0.7547 Intermediate Similarity NPC52264
0.75 Intermediate Similarity NPC251042
0.75 Intermediate Similarity NPC122521
0.75 Intermediate Similarity NPC328311
0.75 Intermediate Similarity NPC139545
0.75 Intermediate Similarity NPC243532
0.75 Intermediate Similarity NPC309606
0.75 Intermediate Similarity NPC174447
0.75 Intermediate Similarity NPC327112
0.75 Intermediate Similarity NPC81896
0.75 Intermediate Similarity NPC321919
0.75 Intermediate Similarity NPC235242
0.75 Intermediate Similarity NPC39633
0.7455 Intermediate Similarity NPC267817
0.7451 Intermediate Similarity NPC477777
0.74 Intermediate Similarity NPC163345
0.7368 Intermediate Similarity NPC201939
0.7368 Intermediate Similarity NPC321838
0.7368 Intermediate Similarity NPC320305
0.7368 Intermediate Similarity NPC40082
0.7368 Intermediate Similarity NPC328776
0.7308 Intermediate Similarity NPC18357
0.7241 Intermediate Similarity NPC322457
0.7222 Intermediate Similarity NPC223677
0.7222 Intermediate Similarity NPC477984
0.7222 Intermediate Similarity NPC474672
0.7222 Intermediate Similarity NPC200845
0.7222 Intermediate Similarity NPC228473
0.7222 Intermediate Similarity NPC128061
0.7222 Intermediate Similarity NPC28779
0.7222 Intermediate Similarity NPC10316
0.717 Intermediate Similarity NPC71761
0.7143 Intermediate Similarity NPC34416
0.7119 Intermediate Similarity NPC328089
0.7119 Intermediate Similarity NPC470320
0.7119 Intermediate Similarity NPC68343
0.7115 Intermediate Similarity NPC470410
0.7115 Intermediate Similarity NPC470412
0.7111 Intermediate Similarity NPC34873
0.7111 Intermediate Similarity NPC155880
0.7111 Intermediate Similarity NPC40434
0.7111 Intermediate Similarity NPC92863
0.7069 Intermediate Similarity NPC174560
0.7069 Intermediate Similarity NPC125312
0.7069 Intermediate Similarity NPC113293
0.7059 Intermediate Similarity NPC207815
0.7037 Intermediate Similarity NPC474127
0.7037 Intermediate Similarity NPC87394
0.7018 Intermediate Similarity NPC322186
0.7018 Intermediate Similarity NPC318306
0.7 Intermediate Similarity NPC255863
0.7 Intermediate Similarity NPC326268
0.7 Intermediate Similarity NPC478098
0.7 Intermediate Similarity NPC478099
0.7 Intermediate Similarity NPC476657
0.7 Intermediate Similarity NPC308331
0.7 Intermediate Similarity NPC318420
0.7 Intermediate Similarity NPC136164
0.7 Intermediate Similarity NPC317881
0.7 Intermediate Similarity NPC245947
0.7 Intermediate Similarity NPC476654
0.7 Intermediate Similarity NPC320642
0.7 Intermediate Similarity NPC476655
0.7 Intermediate Similarity NPC323045
0.6981 Remote Similarity NPC216407
0.6949 Remote Similarity NPC68110
0.6939 Remote Similarity NPC6963
0.6939 Remote Similarity NPC304079
0.6923 Remote Similarity NPC225974
0.6885 Remote Similarity NPC478101
0.6885 Remote Similarity NPC476659
0.6885 Remote Similarity NPC476656
0.6863 Remote Similarity NPC216130
0.6852 Remote Similarity NPC284224
0.6852 Remote Similarity NPC217188
0.6842 Remote Similarity NPC325734
0.6842 Remote Similarity NPC478096
0.6833 Remote Similarity NPC226592
0.6809 Remote Similarity NPC123357
0.6792 Remote Similarity NPC15129
0.6792 Remote Similarity NPC477458
0.6792 Remote Similarity NPC470411
0.6792 Remote Similarity NPC43053
0.6786 Remote Similarity NPC472808
0.6786 Remote Similarity NPC324224
0.678 Remote Similarity NPC477829
0.6774 Remote Similarity NPC22101
0.6774 Remote Similarity NPC478100
0.6774 Remote Similarity NPC330426
0.6774 Remote Similarity NPC478097
0.6774 Remote Similarity NPC127091
0.6774 Remote Similarity NPC271921
0.6774 Remote Similarity NPC99619
0.6774 Remote Similarity NPC49863
0.6774 Remote Similarity NPC104537
0.6774 Remote Similarity NPC148192
0.6774 Remote Similarity NPC26500
0.6739 Remote Similarity NPC180840
0.6731 Remote Similarity NPC135698
0.6731 Remote Similarity NPC267110
0.6727 Remote Similarity NPC300121
0.6724 Remote Similarity NPC478095
0.6721 Remote Similarity NPC323477
0.6667 Remote Similarity NPC283502
0.6667 Remote Similarity NPC170167
0.6667 Remote Similarity NPC472445
0.6667 Remote Similarity NPC324981
0.6667 Remote Similarity NPC161366
0.6667 Remote Similarity NPC477776
0.6667 Remote Similarity NPC151919
0.6667 Remote Similarity NPC473559
0.6667 Remote Similarity NPC273508
0.6667 Remote Similarity NPC48218
0.6667 Remote Similarity NPC221250
0.6667 Remote Similarity NPC87137
0.6667 Remote Similarity NPC476614
0.6667 Remote Similarity NPC209327
0.6667 Remote Similarity NPC141481
0.6613 Remote Similarity NPC142423
0.6613 Remote Similarity NPC308294
0.6613 Remote Similarity NPC328653
0.661 Remote Similarity NPC143857
0.661 Remote Similarity NPC229252
0.6604 Remote Similarity NPC27264
0.6562 Remote Similarity NPC317583
0.6562 Remote Similarity NPC143396
0.6562 Remote Similarity NPC236208
0.6557 Remote Similarity NPC476658
0.6557 Remote Similarity NPC234767
0.6552 Remote Similarity NPC469373
0.6552 Remote Similarity NPC254095
0.6552 Remote Similarity NPC471619
0.6531 Remote Similarity NPC187922
0.6522 Remote Similarity NPC158179
0.6522 Remote Similarity NPC185839
0.6508 Remote Similarity NPC475443
0.6508 Remote Similarity NPC25298
0.6508 Remote Similarity NPC60120

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC117572 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
1.0 High Similarity NPD4222 Approved
0.9333 High Similarity NPD3173 Approved
0.9091 High Similarity NPD39 Approved
0.907 High Similarity NPD5326 Phase 3
0.8667 High Similarity NPD3174 Discontinued
0.8571 High Similarity NPD3172 Approved
0.84 Intermediate Similarity NPD4266 Approved
0.84 Intermediate Similarity NPD3195 Phase 2
0.84 Intermediate Similarity NPD3194 Approved
0.84 Intermediate Similarity NPD3196 Approved
0.8298 Intermediate Similarity NPD5343 Approved
0.78 Intermediate Similarity NPD28 Approved
0.78 Intermediate Similarity NPD29 Approved
0.766 Intermediate Similarity NPD6096 Approved
0.766 Intermediate Similarity NPD6097 Approved
0.7551 Intermediate Similarity NPD622 Approved
0.75 Intermediate Similarity NPD4246 Clinical (unspecified phase)
0.7455 Intermediate Similarity NPD6109 Phase 1
0.7119 Intermediate Similarity NPD3197 Phase 1
0.7059 Intermediate Similarity NPD4220 Pre-registration
0.6792 Remote Similarity NPD6927 Phase 3
0.6774 Remote Similarity NPD4247 Clinical (unspecified phase)
0.6596 Remote Similarity NPD5783 Phase 3
0.6471 Remote Similarity NPD4265 Approved
0.64 Remote Similarity NPD9411 Phase 1
0.614 Remote Similarity NPD8971 Approved
0.6 Remote Similarity NPD2270 Approved
0.5918 Remote Similarity NPD9450 Approved
0.5918 Remote Similarity NPD633 Phase 3
0.5918 Remote Similarity NPD9448 Phase 2
0.5918 Remote Similarity NPD77 Approved
0.5873 Remote Similarity NPD2664 Clinical (unspecified phase)
0.587 Remote Similarity NPD8857 Approved
0.5846 Remote Similarity NPD7331 Phase 2
0.5833 Remote Similarity NPD5784 Clinical (unspecified phase)
0.5833 Remote Similarity NPD3732 Approved
0.5833 Remote Similarity NPD4268 Approved
0.5833 Remote Similarity NPD4271 Approved
0.5714 Remote Similarity NPD4191 Approved
0.5714 Remote Similarity NPD4194 Approved
0.5714 Remote Similarity NPD4192 Approved
0.5714 Remote Similarity NPD4193 Approved
0.5694 Remote Similarity NPD4756 Discovery
0.5676 Remote Similarity NPD4252 Approved
0.5676 Remote Similarity NPD4819 Approved
0.5676 Remote Similarity NPD5368 Approved
0.5676 Remote Similarity NPD5790 Clinical (unspecified phase)
0.5676 Remote Similarity NPD4821 Approved
0.5676 Remote Similarity NPD4820 Approved
0.5676 Remote Similarity NPD4822 Approved
0.566 Remote Similarity NPD3199 Clinical (unspecified phase)
0.56 Remote Similarity NPD5369 Approved
0.56 Remote Similarity NPD9655 Approved

Structure

External Identifiers

PubChem CID   446284
ChEMBL   CHEMBL460026
ZINC  

Physicochemical Properties

Molecular Weight:  302.22
ALogP:  2.1145
MLogP:  3.44
XLogP:  8.022
# Rotatable Bonds:  15
Polar Surface Area:  37.3
# H-Bond Aceptor:  2
# H-Bond Donor:  1
# Rings:  0
# Heavy Atoms:  22

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
Similar NPs/Drugs