CMAUP Plant Collective Molecular Activities

Plant Name: Geum japonicum

Taxonomic Information:

Plant ID: NPO3129
Plant Latin Name: Geum japonicum
Taxonomy Genus: Geum
Taxonomy Family: Rosaceae

Plant External Links:

NCBI TaxonomyDB: 321607
Plant-of-the-World-Online: n.a.

Used in Medicines:

Country/Region:

China

Traditional Medicine System:

TCM

Medicinal Functions:

Astringent; Diuretic; Poultice

Geographical Distribution:

China

Example Image

Geographical Distribution

See the Plant Occurrence Worldwide with Latitude and Longitude Available

Collective Molecular Activities of the Plant

List of Human Proteins Collectively Targeted by the Plant

Target Activity Range: ≤ 10μM
Click Gene ID to Access Activity Profile of Individual Target

Target Class	Target Proteins
Small molecule receptor (family A GPCR)	GPBAR1;
Protein Phosphatase	PTPN1; ACP1; PTPN2; PTPRF;
Enzyme_unclassified	RECQL; HSD11B1; AKR1B10;
Lyase	CA7; CA4; CA12;
Nuclear hormone receptor subfamily 1 group F	RORC;
Nuclear hormone receptor subfamily 1 group H	NR1H4;

List of Human Cytochrome P450 Enzymes Affected by the Plant

Activity Range: ≤ 10μM
Click Gene ID to Access Activity Profile of Individual Enzyme

Cytochrome P450 Enzymes:	CYP1B1;

Detailed Information of Target Proteins

Protein Class	Gene ID	Protein Name	Uniprot ID	Target ChEMBL ID
Cytochrome P450 family 1	CYP1B1	Cytochrome P450 1B1	Q16678	CHEMBL4878
Enzyme_unclassified	RECQL	ATP-dependent DNA helicase Q1	P46063	CHEMBL1293236
Enzyme_unclassified	HSD11B1	11-beta-hydroxysteroid dehydrogenase 1	P28845	CHEMBL4235
Enzyme_unclassified	AKR1B10	Aldo-keto reductase family 1 member B10	O60218	CHEMBL5983
Lyase	CA7	Carbonic anhydrase VII	P43166	CHEMBL2326
Lyase	CA4	Carbonic anhydrase IV	P22748	CHEMBL3729
Lyase	CA12	Carbonic anhydrase XII	O43570	CHEMBL3242
Nuclear hormone receptor subfamily 1 group F	RORC	Nuclear receptor ROR-gamma	P51449	CHEMBL1741186
Nuclear hormone receptor subfamily 1 group H	NR1H4	Bile acid receptor FXR	Q96RI1	CHEMBL2047
Protein Phosphatase	PTPN1	Protein-tyrosine phosphatase 1B	P18031	CHEMBL335
Protein Phosphatase	ACP1	Low molecular weight phosphotyrosine protein phosphatase	P24666	CHEMBL4903
Protein Phosphatase	PTPN2	T-cell protein-tyrosine phosphatase	P17706	CHEMBL3807
Protein Phosphatase	PTPRF	Receptor-type tyrosine-protein phosphatase F (LAR)	P10586	CHEMBL3521
Small molecule receptor (family A GPCR)	GPBAR1	G-protein coupled bile acid receptor 1	Q8TDU6	CHEMBL5409

Enrichment of Gene Ontology of Target Proteins (Activity≤10μM)

Detailed Information of Enriched Gene Ontolgy

GO Type	GO Category	Enriched GO Terms	p-Value	Adjusted p-Value	Enriched Genes
MF	GO:0003824; catalytic activity	GO:0004089; carbonate dehydratase activity	1.372E-07	2.988E-03	CA12, CA4, CA7
BP	GO:0008152; metabolic process	GO:0035335; peptidyl-tyrosine dephosphorylation	6.247E-07	5.113E-03	ACP1, PTPN1, PTPN2, PTPRF
BP	GO:0009987; cellular process	GO:0038183; bile acid signaling pathway	1.463E-06	6.371E-03	GPBAR1, NR1H4
MF	GO:0060089; molecular transducer activity	GO:0038181; bile acid receptor activity	1.463E-06	6.371E-03	GPBAR1, NR1H4
BP	GO:0008152; metabolic process	GO:0006730; one-carbon metabolic process	2.134E-06	7.744E-03	CA12, CA4, CA7
BP	GO:0009987; cellular process	GO:1902202; regulation of hepatocyte growth factor receptor signaling pathway	2.924E-06	9.097E-03	PTPN1, PTPN2
BP	GO:0051179; localization	GO:0015701; bicarbonate transport	3.944E-06	9.543E-03	CA12, CA4, CA7
MF	GO:0005488; binding	GO:0008270; zinc ion binding	1.226E-05	1.907E-02	CA12, CA4, CA7, NR1H4, PTPN1, RORC
MF	GO:0003824; catalytic activity	GO:0004726; non-membrane spanning protein tyrosine phosphatase activity	1.363E-05	1.923E-02	ACP1, PTPN2

Enriched KEGG Pathways of Target Proteins (Activity≤10μM)

Top 10 KEGG Pathways (ordered by adjusted p-value)

Detailed Information of Enriched KEGG Pathways

Pathway Category Top Level	Pathway Category Second Level	Pathway ID	Pathway Name	p-Value	Adjusted p-Value	Enriched Genes
09100 Metabolism	09102 Energy metabolism	hsa00910	Nitrogen metabolism	1.846E-07	3.877E-06	CA12, CA4, CA7
09140 Cellular Processes	09144 Cellular community - eukaryotes	hsa04520	Adherens junction	1.719E-05	1.805E-04	PTPN1, ACP1, PTPRF
09100 Metabolism	09103 Lipid metabolism	hsa00140	Steroid hormone biosynthesis	7.355E-04	5.148E-03	HSD11B1, CYP1B1
09100 Metabolism	09111 Xenobiotics biodegradation and metabolism	hsa00980	Metabolism of xenobiotics by cytochrome P450	1.162E-03	6.102E-03	HSD11B1, CYP1B1
09160 Human Diseases	09166 Endocrine and metabolic diseases	hsa04931	Insulin resistance	2.566E-03	8.981E-03	PTPN1, PTPRF
09160 Human Diseases	09161 Cancers	hsa05204	Chemical carcinogenesis	1.464E-03	6.147E-03	HSD11B1, CYP1B1
09150 Organismal Systems	09152 Endocrine system	hsa04910	Insulin signaling pathway	4.132E-03	1.239E-02	PTPN1, PTPRF
09150 Organismal Systems	09159 Environmental adaptation	hsa04710	Circadian rhythm	2.080E-02	4.234E-02	RORC
09150 Organismal Systems	09155 Excretory system	hsa04964	Proximal tubule bicarbonate reclamation	1.599E-02	4.196E-02	CA4
09100 Metabolism	09101 Carbohydrate metabolism	hsa00052	Galactose metabolism	2.080E-02	4.234E-02	AKR1B10

Human Diseases Associated with the Target Proteins of the Plant

Detailed Information of Human Diseases

ICD10 Disease Category	Disease Name	ICD10 Code	Associated Disease Targets (Association Ref: TTD database)
H00-H59: Diseases of the eye and adnexa	Ocular hypertension	H40.0	CA4;
H00-H59: Diseases of the eye and adnexa	Open-angle glaucoma	H40-H42	CA4;

Data Section	Select to Download
1. General Info & Plant Usage & Geographical Distribution
2. Human Target Proteins
3. Target Gene Ontology
4. Target KEGG Pathway
5. Related Human Diseases