NPASS Compound

Natural Product: NPC7979

Natural Product ID	NPC7979
Common Name ? The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.	IONFWKSMWBHQIK-KQFOHDOJSA-N
IUPAC Name	n.a.
Synonyms
Synthetic Gene Cluster	n.a.
ChEMBL Identifier	n.a.
PubChem CID	21672626
Chemical Classification	CHEMONTID:0000000 [Organic compounds] [CHEMONTID:0000012] Lipids and lipid-like molecules [CHEMONTID:0000259] Prenol lipids [CHEMONTID:0001553] Triterpenoids

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

Chemical Representations

RDKit 3D 82 86 0 0 0 0 0 0 0 0999 V2000 5.6881 1.0076 -2.7285 C 0 0 0 0 0 0 0 0 0 0 0 0 5.2293 0.8482 -1.2564 C 0 0 2 0 0 0 0 0 0 0 0 0 5.7062 -0.4636 -0.7680 C 0 0 0 0 0 0 0 0 0 0 0 0 4.6634 -1.3228 -0.1344 C 0 0 0 0 0 0 0 0 0 0 0 0 3.8201 -0.4822 0.7937 C 0 0 2 0 0 0 0 0 0 0 0 0 3.0028 -1.2623 1.7410 C 0 0 0 0 0 0 0 0 0 0 0 0 1.5809 -0.8078 1.9392 C 0 0 0 0 0 0 0 0 0 0 0 0 0.8469 -0.7675 0.6717 C 0 0 2 0 0 0 0 0 0 0 0 0 0.6326 -2.2134 0.2022 C 0 0 0 0 0 0 0 0 0 0 0 0 1.6328 0.0068 -0.3211 C 0 0 0 0 0 0 0 0 0 0 0 0 0.9953 0.3153 -1.4429 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.4303 -0.0648 -1.7460 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.2158 -0.4415 -0.5521 C 0 0 1 0 0 0 0 0 0 0 0 0 -0.5103 -0.0895 0.7295 C 0 0 2 0 0 0 0 0 0 0 0 0 -0.3152 1.3972 0.9250 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.2887 -0.5526 1.9440 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.6891 -0.0107 1.9343 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.3813 -0.3833 0.6651 C 0 0 1 0 0 0 0 0 0 0 0 0 -4.8247 0.0024 0.6709 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.4409 -0.8727 1.7933 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.1043 1.4213 1.0923 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.5726 -0.3914 -0.5696 C 0 0 2 0 0 0 0 0 0 0 0 0 -4.7882 -0.4981 -1.8145 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.3678 -0.9973 -1.6156 C 0 0 2 0 0 0 0 0 0 0 0 0 -2.6560 -0.0573 -0.6115 C 0 0 2 0 0 0 0 0 0 0 0 0 -2.8590 1.2807 -1.1917 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.7390 -1.0307 -2.8216 O 0 0 0 0 0 0 0 0 0 0 0 0 -6.5600 0.6049 -0.7713 O 0 0 0 0 0 0 0 0 0 0 0 0 3.0124 0.4316 -0.0875 C 0 0 2 0 0 0 0 0 0 0 0 0 3.7276 0.9106 -1.3082 C 0 0 1 0 0 0 0 0 0 0 0 0 3.3756 2.3854 -1.5605 C 0 0 0 0 0 0 0 0 0 0 0 0 4.7863 0.3170 1.6407 C 0 0 0 0 0 0 0 0 0 0 0 0 4.6375 1.5489 1.6642 O 0 0 0 0 0 0 0 0 0 0 0 0 5.7855 -0.2843 2.3544 O 0 0 0 0 0 0 0 0 0 0 0 0 6.6599 0.5068 -2.8729 H 0 0 0 0 0 0 0 0 0 0 0 0 4.9630 0.5205 -3.4103 H 0 0 0 0 0 0 0 0 0 0 0 0 5.7072 2.0838 -3.0009 H 0 0 0 0 0 0 0 0 0 0 0 0 5.7072 1.7247 -0.7682 H 0 0 0 0 0 0 0 0 0 0 0 0 6.1230 -1.0442 -1.6194 H 0 0 0 0 0 0 0 0 0 0 0 0 6.5857 -0.2915 -0.0971 H 0 0 0 0 0 0 0 0 0 0 0 0 5.1752 -2.1415 0.4054 H 0 0 0 0 0 0 0 0 0 0 0 0 3.9884 -1.7526 -0.9013 H 0 0 0 0 0 0 0 0 0 0 0 0 3.1203 -2.3344 1.4864 H 0 0 0 0 0 0 0 0 0 0 0 0 3.4393 -1.2241 2.7970 H 0 0 0 0 0 0 0 0 0 0 0 0 1.1310 -1.5641 2.6516 H 0 0 0 0 0 0 0 0 0 0 0 0 1.6330 0.1197 2.5303 H 0 0 0 0 0 0 0 0 0 0 0 0 1.4985 -2.8732 0.5057 H 0 0 0 0 0 0 0 0 0 0 0 0 0.5977 -2.3091 -0.8867 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.2193 -2.6850 0.7456 H 0 0 0 0 0 0 0 0 0 0 0 0 1.5704 0.8815 -2.1654 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.8246 0.8135 -2.3031 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.3410 -0.8624 -2.5289 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.2501 -1.5794 -0.5660 H 0 0 0 0 0 0 0 0 0 0 0 0 0.3567 1.5138 1.8138 H 0 0 0 0 0 0 0 0 0 0 0 0 0.0107 1.9498 0.0546 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.2565 1.9005 1.2716 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.7655 -0.0993 2.8333 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.3005 -1.6274 2.1013 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.7792 1.0185 2.2656 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.2257 -0.5975 2.7474 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.3881 -1.5242 0.7102 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.5444 -0.9179 1.5977 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.0473 -1.9070 1.7039 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.2966 -0.4150 2.7716 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.7870 1.9519 0.3627 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.6909 1.4922 2.0570 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.2141 2.0395 1.2765 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.1592 -1.3356 -0.4523 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.7488 0.4539 -2.4189 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.2557 -1.2268 -2.5138 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.4147 -1.9856 -1.1505 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.1585 2.0679 -0.9360 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.7888 1.1845 -2.3185 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.8760 1.7041 -1.0535 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.8082 -1.9462 -3.1879 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.2471 0.5723 -0.0700 H 0 0 0 0 0 0 0 0 0 0 0 0 2.9368 1.3700 0.5628 H 0 0 0 0 0 0 0 0 0 0 0 0 3.4590 0.3723 -2.2333 H 0 0 0 0 0 0 0 0 0 0 0 0 4.2171 3.0385 -1.2314 H 0 0 0 0 0 0 0 0 0 0 0 0 2.5262 2.6647 -0.9073 H 0 0 0 0 0 0 0 0 0 0 0 0 3.1569 2.6058 -2.6004 H 0 0 0 0 0 0 0 0 0 0 0 0 6.4444 0.2091 2.9522 H 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 1 0 4 5 1 0 5 6 1 0 6 7 1 0 7 8 1 0 8 9 1 6 8 10 1 0 10 11 2 0 11 12 1 0 12 13 1 0 13 14 1 0 14 15 1 1 14 16 1 0 16 17 1 0 17 18 1 0 18 19 1 0 19 20 1 0 19 21 1 0 19 22 1 0 22 23 1 0 23 24 1 0 24 25 1 0 25 26 1 6 24 27 1 0 22 28 1 0 10 29 1 0 29 30 1 0 30 31 1 0 5 32 1 1 32 33 2 0 32 34 1 0 30 2 1 0 29 5 1 0 14 8 1 0 25 18 1 0 25 13 1 0 1 35 1 0 1 36 1 0 1 37 1 0 2 38 1 1 3 39 1 0 3 40 1 0 4 41 1 0 4 42 1 0 6 43 1 0 6 44 1 0 7 45 1 0 7 46 1 0 9 47 1 0 9 48 1 0 9 49 1 0 11 50 1 0 12 51 1 0 12 52 1 0 13 53 1 1 15 54 1 0 15 55 1 0 15 56 1 0 16 57 1 0 16 58 1 0 17 59 1 0 17 60 1 0 18 61 1 1 20 62 1 0 20 63 1 0 20 64 1 0 21 65 1 0 21 66 1 0 21 67 1 0 22 68 1 1 23 69 1 0 23 70 1 0 24 71 1 1 26 72 1 0 26 73 1 0 26 74 1 0 27 75 1 0 28 76 1 0 29 77 1 1 30 78 1 6 31 79 1 0 31 80 1 0 31 81 1 0 34 82 1 0 M END

Standard InCHIKey	IONFWKSMWBHQIK-KQFOHDOJSA-N
Standard InCHI	InChI=1S/C30H48O4/c1-17-10-13-30(25(33)34)15-14-27(5)19(24(30)18(17)2)8-9-21-28(27,6)12-11-20-26(3,4)22(31)16-23(32)29(20,21)7/h8,17-18,20-24,31-32H,9-16H2,1-7H3,(H,33,34)/t17-,18+,20+,21+,22+,23-,24+,27-,28-,29+,30+/m1/s1
SMILES	C[C@@H]1CC[C@@]2(CC[C@]3(C)C(=CC[C@H]4[C@@]3(C)CC[C@H]3C(C)(C)[C@H](C[C@H]([C@]43C)O)O)[C@@H]2[C@H]1C)C(=O)O

Calculated Properties

Physi-Chem Properties

Molecular Weight:	472.36	Volume:	514.542 ? Van der Waals volume.
Dense:	0.918	LogP:	4.001 ? The logarithm of the n-octanol/water distribution coefficients.
logD7.4:	3.398 ? The logarithm of the n-octanol/water distribution coefficient at pH=7.4.	LogS:	-4.761 ? The logarithm of aqueous solubility value.
Rotatable Bonds:	1.0	Rigid Bonds:	27.0
TPSA:	77.76 ? Topological Polar Surface Area.	H-Bond Acceptor:	4.0
H-Bond Donor:	3.0	Rings:	5.0
Heavy Atoms:	4.0

MedChem Properties

QED Drug-Likeness Score:	0.405	GASA:	1.0 ? GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:	4.994	Fsp³:	0.9
MCE-18:	105.368 ? MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.	Lipinski Rule-of-5:	Rejected
Pfizer Rule:	Rejected	GSK Rule:	Accepted
Golden Triangle Rule:	Rejected	BMS Rule:	0
Chelating Alert:	0	PAINS Alert:	0
Colloidal aggregators:	0.658	Fluc inhibitor:	0.0 ? The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:	0.282 ? The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1	Green fluorescence:	0.0 ? The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:	0.314	Promiscuous compounds:	0.1

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:	-5.559	MDCK Permeability:	-5.171
Pgp-inhibitor:	0.015	Pgp-substrate:	0.044
PAMPA:	0.999 ? The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).	Human Intestinal Absorption (HIA):	0.004
20% Bioavailability (F20%):	0.72	30% Bioavailability (F30%):	0.269
50% Bioavailability (F50%):	0.991

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):	0.72	MRP1:	0.972
Plasma Protein Binding (PPB):	94.012%	Volume Distribution (VD):	-0.447
Fu:	6.924% ? The fraction unbound in plasms.	OATP1B1 inhibitor:	1.0
OATP1B3 inhibitor:	0.901	BCRP inhibitor:	0.124
BSEP inhibitor:	0.933

ADMET: Metabolism

CYP1A2-inhibitor:	0.0	CYP1A2-substrate:	0.0
CYP2C19-inhibitor:	0.029	CYP2C19-substrate:	0.0
CYP2C9-inhibitor:	0.001	CYP2C9-substrate:	0.0
CYP2D6-inhibitor:	0.0	CYP2D6-substrate:	0.0
CYP3A4-inhibitor:	0.983	CYP3A4-substrate:	0.013
CYP2B6-substrate:	0.0	CYP2C8-inhibitor:	0.0
HLM stability:	0.002 ? Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):

3.388

Half-life (T1/2):

1.275

ADMET: Toxicity

hERG Blockers:	0.026	hERG Blockers (10um):	0.06
Human Hepatotoxicity (H-HT):	0.677	Drug-induced Liver Injury (DILI):	0.6
AMES Toxicity:	0.406	Rat Oral Acute Toxicity:	0.692
Maximum Recommended Daily Dose:	0.735	Skin Sensitization:	0.984
Carcinogencity:	0.906	Eye Corrosion:	0.008
Eye Irritation:	0.571	Respiratory Toxicity:	0.987
Drug-induced Neurotoxicity:	0.098	Ototoxicity:	0.768
Hematotoxicity:	0.641	Drug-induced Nephrotoxicity:	0.903
Genotoxicity:	0.565	RPMI-8226 Immunitoxicity:	0.042
A549 Cytotoxicity:	0.542	Hek293 Cytotoxicity:	0.209
BCF:	0.777 ? Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].	IGC50:	3.481 ? 48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:	5.071 ? 48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].	LC50FM:	4.402 ? 96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

Species Source

Organism ID	Organism Name	Taxonomy Level	Family	SuperKingdom	Isolation Part	Collection Location	Collection Time	Reference
NPO13325	Plantago lanceolata	Species	Plantaginaceae	Eukaryota	n.a.	n.a.	n.a.	DOI[10.1038/ncomms4886]
NPO26266	Isodon japonicus	Species	Lamiaceae	Eukaryota	n.a.	n.a.	n.a.	DOI[10.1039/C39730000707]
NPO1071	Parerythropodium fulvum	Species	n.a.	n.a.	n.a.	n.a.	n.a.	PMID[11277760]
NPO10021	Nerium oleander	Species	Apocynaceae	Eukaryota	leaves	Niigata City, Niigata Province, Japan	2000-Nov	PMID[15730243]
NPO10021	Nerium oleander	Species	Apocynaceae	Eukaryota	leaves	n.a.	n.a.	PMID[16933868]
NPO10021	Nerium oleander	Species	Apocynaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[17253842]
NPO10021	Nerium oleander	Species	Apocynaceae	Eukaryota	stems and twigs	n.a.	n.a.	PMID[17595134]
NPO10021	Nerium oleander	Species	Apocynaceae	Eukaryota	stems and twigs	Niigata City, Niigata Province, Japan	2001-NOV	PMID[17595134]
NPO26266	Isodon japonicus	Species	Lamiaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[18491868]
NPO3936	Malva sylvestris	Species	Malvaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[19731587]
NPO10021	Nerium oleander	Species	Apocynaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[29693393]
NPO3936	Malva sylvestris	Species	Malvaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[37726667]
NPO3936	Malva sylvestris	Species	Malvaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[39382805]
NPO10021	Nerium oleander	Species	Apocynaceae	Eukaryota	Leaves; Stems	n.a.	n.a.	PMID[9214727]
NPO1607	Croton rhamnifolius	Species	Euphorbiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO2342	Cytisus scoparius	Species	Fabaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO2518	Crinum kirkii	Species	Amaryllidaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO10021	Nerium oleander	Species	Apocynaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO2361	Aconitum brevicalcaratum	Species	Ranunculaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO3146	Ammodendron conollyi	Species	Fabaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO351	Cirsium dipsacolepis	Species	Asteraceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO6377	Cocculus diversifolius	Species	Menispermaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO13325	Plantago lanceolata	Species	Plantaginaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO8585	Verpa digitaliformis	Species	Morchellaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO1308	Veronica pectinata	Species	Plantaginaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO15583	Tripodanthus acutifolius	Species	Loranthaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO6776	Trifolium apertum	Species	Fabaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO715	Teucrium pestalozzae	Species	Lamiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO5197	Streptomyces eurythermus	Species	Streptomycetaceae	Bacteria	n.a.	n.a.	n.a.	Database[COCONUT]
NPO6974	Solanum racemigerum	Species	Solanaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO20132	Scutellaria seleriana	Species	Lamiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO7097	Rhynchosporium orthosporum	Species	n.a.	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO8840	Ptilidium ciliare	Species	Ptilidiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO4253	Viguiera annua	Species	Asteraceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO1071	Parerythropodium fulvum	Species	n.a.	n.a.	n.a.	n.a.	n.a.	Database[COCONUT]
NPO4082	Ophiarthrum elegans	Species	Ophiocomidae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO6520	Myrica multiflora	Species	Myricaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO3664	Mesembryanthemum anatomicum	Species	Aizoaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO3936	Malva sylvestris	Species	Malvaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO8472	Knightia deplanchei	Species	Proteaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO26266	Isodon japonicus	Species	Lamiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO2747	Hypericum triquetrifolium	Species	Hypericaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO5591	Fucus spiralis	Species	Fucaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO5980	Eria subsessilis	Species	Orchidaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO13325	Plantago lanceolata	Species	Plantaginaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO6520	Myrica multiflora	Species	Myricaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO2342	Cytisus scoparius	Species	Fabaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO3936	Malva sylvestris	Species	Malvaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO3664	Mesembryanthemum anatomicum	Species	Aizoaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO10021	Nerium oleander	Species	Apocynaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO2747	Hypericum triquetrifolium	Species	Hypericaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO13325	Plantago lanceolata	Species	Plantaginaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO2747	Hypericum triquetrifolium	Species	Hypericaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO3664	Mesembryanthemum anatomicum	Species	Aizoaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO6520	Myrica multiflora	Species	Myricaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO2518	Crinum kirkii	Species	Amaryllidaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO3936	Malva sylvestris	Species	Malvaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO2342	Cytisus scoparius	Species	Fabaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO10021	Nerium oleander	Species	Apocynaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO2342	Cytisus scoparius	Species	Fabaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCM_Taiwan]
NPO26266	Isodon japonicus	Species	Lamiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO5591	Fucus spiralis	Species	Fucaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO20132	Scutellaria seleriana	Species	Lamiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO2747	Hypericum triquetrifolium	Species	Hypericaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO715	Teucrium pestalozzae	Species	Lamiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO8472	Knightia deplanchei	Species	Proteaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO15583	Tripodanthus acutifolius	Species	Loranthaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO8840	Ptilidium ciliare	Species	Ptilidiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO2342	Cytisus scoparius	Species	Fabaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO4082	Ophiarthrum elegans	Species	Ophiocomidae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO2361	Aconitum brevicalcaratum	Species	Ranunculaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO6776	Trifolium apertum	Species	Fabaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO5197	Streptomyces eurythermus	Species	Streptomycetaceae	Bacteria	n.a.	n.a.	n.a.	Database[UNPD]
NPO351	Cirsium dipsacolepis	Species	Asteraceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO1071	Parerythropodium fulvum	Species	n.a.	n.a.	n.a.	n.a.	n.a.	Database[UNPD]
NPO3936	Malva sylvestris	Species	Malvaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO3664	Mesembryanthemum anatomicum	Species	Aizoaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO8585	Verpa digitaliformis	Species	Morchellaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO6377	Cocculus diversifolius	Species	Menispermaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO7097	Rhynchosporium orthosporum	Species	n.a.	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO6974	Solanum racemigerum	Species	Solanaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO13325	Plantago lanceolata	Species	Plantaginaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO1607	Croton rhamnifolius	Species	Euphorbiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO6520	Myrica multiflora	Species	Myricaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO5980	Eria subsessilis	Species	Orchidaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO3146	Ammodendron conollyi	Species	Fabaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO2518	Crinum kirkii	Species	Amaryllidaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO4253	Viguiera annua	Species	Asteraceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO1308	Veronica pectinata	Species	Plantaginaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO10021	Nerium oleander	Species	Apocynaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

NP Quantity Composition/Concentration

Organism ID	Organism Name	Organism Material Preparation	Organism Part	NP Quantity (Standard)	NP Quantity (Minimum)	NP Quantity (Maximum)	Quantity Unit	Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

Biological Activity

Molecular-level activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

In vitro activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

In vivo activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

Experimental ADME

Experiment Model	Experiment Tissue	ADME Type	ADME Relation	ADME Value	ADME Unit	Reference

Experimental Toxicity

Quantitative toxicity

Experiment Model	Experiment Organism	Toxicity Type	Toxicity Relation	Toxicity Value	Toxicity Unit	Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity	Carcinogenicity	Mutagenicity	Cardiotoxicity	Respiratory Toxicity	Eye Irritation	Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
☉ ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
☉ TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]

Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

● The left chart: Distribution of similarity level between NPC7979 and all remaining natural products in the NPASS database.
● The right table: Most similar natural products (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	22906
0.1-0.2	23127
0.2-0.3	3115
0.3-0.4	479
0.4-0.5	159
0.5-0.6	38
0.6-0.7	17
0.7-0.8	0
0.8-0.85	0
0.85-0.9	0
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Natural Product ID
0.75	Intermediate Similarity	NPC51700
0.75	Intermediate Similarity	NPC88716
0.75	Intermediate Similarity	NPC68160
0.75	Intermediate Similarity	NPC479079
0.6866	Remote Similarity	NPC61543
0.6866	Remote Similarity	NPC293048
0.6866	Remote Similarity	NPC225585
0.6866	Remote Similarity	NPC71074
0.6866	Remote Similarity	NPC605937
0.6522	Remote Similarity	NPC173089
0.6522	Remote Similarity	NPC87095
0.6522	Remote Similarity	NPC32407
0.6522	Remote Similarity	NPC263548
0.6522	Remote Similarity	NPC606320
0.6324	Remote Similarity	NPC274330
0.6216	Remote Similarity	NPC230151
0.6197	Remote Similarity	NPC485589
0.6176	Remote Similarity	NPC274050
0.6176	Remote Similarity	NPC162632
0.6087	Remote Similarity	NPC477289
0.6056	Remote Similarity	NPC477288
0.5833	Remote Similarity	NPC305464
0.5833	Remote Similarity	NPC19376
0.5833	Remote Similarity	NPC25848
0.5753	Remote Similarity	NPC610635
0.5694	Remote Similarity	NPC37221
0.5679	Remote Similarity	NPC57362
0.5658	Remote Similarity	NPC485586
0.5658	Remote Similarity	NPC485588
0.5616	Remote Similarity	NPC256247
0.5616	Remote Similarity	NPC293564
0.5616	Remote Similarity	NPC479077
0.561	Remote Similarity	NPC177246
0.5556	Remote Similarity	NPC195019
0.5467	Remote Similarity	NPC118964
0.5467	Remote Similarity	NPC477290
0.5455	Remote Similarity	NPC601696
0.5417	Remote Similarity	NPC480946
0.5417	Remote Similarity	NPC187722
0.5417	Remote Similarity	NPC130577
0.5417	Remote Similarity	NPC142415
0.5417	Remote Similarity	NPC102683
0.5417	Remote Similarity	NPC159365
0.5405	Remote Similarity	NPC202728
0.5405	Remote Similarity	NPC158059
0.5342	Remote Similarity	NPC182797
0.5342	Remote Similarity	NPC52169
0.5342	Remote Similarity	NPC488562
0.5309	Remote Similarity	NPC485585
0.5263	Remote Similarity	NPC127689
0.5263	Remote Similarity	NPC25299
0.5263	Remote Similarity	NPC481322
0.52	Remote Similarity	NPC40092
0.5135	Remote Similarity	NPC606443
0.5119	Remote Similarity	NPC485882
0.5068	Remote Similarity	NPC242631
0.5067	Remote Similarity	NPC300351
0.5065	Remote Similarity	NPC474529
0.5055	Remote Similarity	NPC479744

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

● The left chart: Distribution of similarity level between NPC7979 and all drugs/candidates.
● The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	6496
0.1-0.2	2592
0.2-0.3	58
0.3-0.4	4
0.4-0.5	0
0.5-0.6	0
0.6-0.7	0
0.7-0.8	0
0.8-0.85	0
0.85-0.9	0
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Drug ID	Developmental Stage
		NPD

Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity

B: biological targets similarity

C: networks similarity

D: cell-based bioactivity similarity

E: similarity based on clinical data