Natural Product: NPC46565

Natural Product IDNPC46565
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
Hinokitiol
IUPAC Name hydron;7-oxo-5-propan-2-ylcyclohepta-1,3,5-trien-1-olate
Synonyms beta-thujaplicin
Synthetic Gene Cluster n.a.
ChEMBL Identifier CHEMBL48310
PubChem CID 71773484
3611
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0004150] Hydrocarbon derivatives
      • [CHEMONTID:0001650] Tropones
        • [CHEMONTID:0001674] Tropolones

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey FUWUEFKEXZQKKA-UHFFFAOYSA-N
Standard InCHI InChI=1S/C10H12O2/c1-7(2)8-4-3-5-9(11)10(12)6-8/h3-7H,1-2H3,(H,11,12)
SMILES CC(c1cccc(c(=O)c1)O)C

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   164.08 Volume:   179.994
?
Van der Waals volume.
Dense:   0.912 LogP:   2.195
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   1.917
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -2.33
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   1.0 Rigid Bonds:   8.0
TPSA:   37.3
?
Topological Polar Surface Area.
H-Bond Acceptor:   2.0
H-Bond Donor:   1.0 Rings:   1.0
Heavy Atoms:   2.0

MedChem Properties

QED Drug-Likeness Score:   0.688 GASA:   0.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   1.935 Fsp3:   0.3
MCE-18:   7.0
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Rejected
Pfizer Rule:   Rejected GSK Rule:   Rejected
Golden Triangle Rule:   Accepted BMS Rule:   0
Chelating Alert:   1 PAINS Alert:   0
Colloidal aggregators:   0.168 Fluc inhibitor:   0.242
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.016
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.002
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.975 Promiscuous compounds:   0.316

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -4.681 MDCK Permeability:   -4.709
Pgp-inhibitor:   0.784 Pgp-substrate:   0.054
PAMPA:   0.073
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.134
20% Bioavailability (F20%):   0.65 30% Bioavailability (F30%):   0.943
50% Bioavailability (F50%):   0.993

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.04 MRP1:   0.872
Plasma Protein Binding (PPB):   95.607% Volume Distribution (VD):   0.146
Fu: 3.47%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   0.932
OATP1B3 inhibitor:   0.987 BCRP inhibitor:   0.523
BSEP inhibitor:   0.899

ADMET: Metabolism

CYP1A2-inhibitor:   0.051 CYP1A2-substrate:   0.152
CYP2C19-inhibitor:   0.022 CYP2C19-substrate:   0.267
CYP2C9-inhibitor:   0.0 CYP2C9-substrate:   0.007
CYP2D6-inhibitor:   0.005 CYP2D6-substrate:   0.019
CYP3A4-inhibitor:   0.607 CYP3A4-substrate:   0.998
CYP2B6-substrate:   0.0 CYP2C8-inhibitor:   0.988
HLM stability:   0.944
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  10.533 Half-life (T1/2):  1.299

ADMET: Toxicity

hERG Blockers:  0.067 hERG Blockers (10um):  0.514
Human Hepatotoxicity (H-HT):  0.453 Drug-induced Liver Injury (DILI):  0.135
AMES Toxicity:  0.427 Rat Oral Acute Toxicity:  0.383
Maximum Recommended Daily Dose:  0.477 Skin Sensitization:  0.474
Carcinogencity:  0.496 Eye Corrosion:  0.767
Eye Irritation:  0.989 Respiratory Toxicity:  0.716
Drug-induced Neurotoxicity:  0.448 Ototoxicity:  0.256
Hematotoxicity:  0.398 Drug-induced Nephrotoxicity:  0.531
Genotoxicity:  0.746 RPMI-8226 Immunitoxicity:  0.111
A549 Cytotoxicity:  0.165 Hek293 Cytotoxicity:  0.334
BCF:   1.279
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   3.626
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   4.497
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   4.308
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO7904 Ganoderma applanatum Species Polyporaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/S0031-9422(00)91122-1]
NPO88 Rheum undulatum Species Polygonaceae Eukaryota rhizome n.a. n.a. PMID[10714491]
NPO18632 Elfvingia applanata Species n.a. n.a. Fruits n.a. n.a. PMID[11975498]
NPO7904 Ganoderma applanatum Species Polyporaceae Eukaryota n.a. Sri Lankan n.a. PMID[16933889]
NPO5105 Lagenaria siceraria Species Cucurbitaceae Eukaryota n.a. stem n.a. PMID[18310955]
NPO1533 Corynespora cassiicola Species Corynesporascaceae Eukaryota n.a. n.a. n.a. PMID[25594263]
NPO1533 Corynespora cassiicola Species Corynesporascaceae Eukaryota n.a. Xisha Islands coral reef in the South China Sea 2009-DEC PMID[25594263]
NPO7904 Ganoderma applanatum Species Polyporaceae Eukaryota n.a. n.a. n.a. PMID[27996259]
NPO18636 Cupressus macrocarpa Species Cupressaceae Eukaryota n.a. n.a. n.a. PMID[32223924]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. PMID[36985451]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. PMID[38794396]
NPO18632 Elfvingia applanata Species n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO88 Rheum undulatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14163.1 Hesperocyparis goveniana var. abramsiana Varieties Cupressaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO18636 Cupressus macrocarpa Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6454 Delphinium tatsienense Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5105 Lagenaria siceraria Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO2553 Adenocarpus commutatus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5314 Sargassum parvivesiculosum Species Sargassaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4947 Tagetes minuta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8197 Scrophularia deserti Species Scrophulariaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO1533 Corynespora cassiicola Species Corynesporascaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO2247 Iphiona scabra Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7904 Ganoderma applanatum Species Polyporaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5105 Lagenaria siceraria Species Cucurbitaceae Eukaryota n.a. n.a. Database[FooDB]
NPO5105 Lagenaria siceraria Species Cucurbitaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO5105 Lagenaria siceraria Species Cucurbitaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO5105 Lagenaria siceraria Species Cucurbitaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO4947 Tagetes minuta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28445 Juniperus taiwaniana Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO6454 Delphinium tatsienense Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13425 Hesperocyparis sargentii Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18636 Cupressus macrocarpa Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14163.1 Hesperocyparis goveniana var. abramsiana Varieties Cupressaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7904 Ganoderma applanatum Species Polyporaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6454 Delphinium tatsienense Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5314 Sargassum parvivesiculosum Species Sargassaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4947 Tagetes minuta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28445 Juniperus taiwaniana Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7904 Ganoderma applanatum Species Polyporaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO5105 Lagenaria siceraria Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO6454 Delphinium tatsienense Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO88 Rheum undulatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO3111 Daphnandra micrantha Species Atherospermataceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8197 Scrophularia deserti Species Scrophulariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5105 Lagenaria siceraria Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7904 Ganoderma applanatum Species Polyporaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23693 Alseodaphne semecarpifolia Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO421 Polygonum maritimum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6454 Delphinium tatsienense Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16088 Streptomyces scabiei Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO88 Rheum undulatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18636 Cupressus macrocarpa Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4947 Tagetes minuta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1533 Corynespora cassiicola Species Corynesporascaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5314 Sargassum parvivesiculosum Species Sargassaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2553 Adenocarpus commutatus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5403 Fagus menziesii Species Fagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14163.1 Hesperocyparis goveniana var. abramsiana Varieties Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2247 Iphiona scabra Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7759 Penicillium nalgiovensis Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13425 Hesperocyparis sargentii Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4112 Ficus fistulosa Species Moraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5260 Osteospermum thodei Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7604 Viguiera lanceolata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18632 Elfvingia applanata Species n.a. n.a. n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT1197 Individual protein Huntingtin Homo sapiens Potency = 8912.5 nM PubChem BioAssay data set
NPT3 Individual protein Thioredoxin glutathione reductase Schistosoma mansoni Potency = 89125.1 nM PubChem BioAssay data set
NPT1119 Individual protein Arachidonate 12-lipoxygenase Homo sapiens Potency = 2511.9 nM PubChem BioAssay data set
NPT151 Individual protein 15-hydroxyprostaglandin dehydrogenase [NAD+] Homo sapiens Potency = 39810.7 nM PubChem BioAssay data set
NPT109 Individual protein Cytochrome P450 3A4 Homo sapiens Potency = 631.0 nM PubChem BioAssay data set
NPT270 Individual protein Nitric oxide synthase, inducible Mus musculus Inhibition = 18.0 % PMID[21189019]
NPT150 Individual protein Anthrax lethal factor Bacillus anthracis Inhibition = 66.0 % PMID[21189019]
NPT280 Individual protein Matrix metalloproteinase 9 Homo sapiens Inhibition = 99.0 % PMID[21189019]
NPT152 Individual protein Nuclear factor erythroid 2-related factor 2 Homo sapiens Potency n.a. 18356.4 nM PubChem BioAssay data set
NPT1139 Individual protein Arachidonate 15-lipoxygenase, type II Homo sapiens Potency n.a. 12589.3 nM PubChem BioAssay data set
NPT198 Individual protein Vitamin D receptor Homo sapiens Potency n.a. 56234.1 nM PubChem BioAssay data set
NPT135 Individual protein Chromobox protein homolog 1 Homo sapiens Potency n.a. 100000.0 nM PubChem BioAssay data set
NPT2971 Individual protein DNA dC->dU-editing enzyme APOBEC-3F Homo sapiens Potency n.a. 31622.8 nM PubChem BioAssay data set
NPT101 Individual protein Glucagon-like peptide 1 receptor Homo sapiens Potency n.a. 2238.7 nM PubChem BioAssay data set
NPT2977 Individual protein Thermolysin Bacillus thermoproteolyticus IC50 = 61000.0 nM PMID[14519960]
NPT2978 Individual protein Collagenase Clostridium histolyticum IC50 = 24000.0 nM PMID[14519960]
NPT2979 Individual protein Carboxypeptidase A1 Bos taurus IC50 = 2760.0 nM PMID[14519960]
NPT160 Individual protein TAR DNA-binding protein 43 Homo sapiens Potency n.a. 19952.6 nM PubChem BioAssay data set
NPT50 Individual protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency = 28183.8 nM PubChem BioAssay data set
NPT531 Individual protein Nuclear receptor ROR-gamma Mus musculus Potency = 2818.4 nM PubChem BioAssay data set
NPT55 Individual protein Putative fructose-1,6-bisphosphate aldolase Giardia intestinalis Potency = 14091.9 nM PubChem BioAssay data set
NPT531 Individual protein Nuclear receptor ROR-gamma Mus musculus Potency = 1995.3 nM PubChem BioAssay data set
NPT531 Individual protein Nuclear receptor ROR-gamma Mus musculus Potency = 11220.2 nM PubChem BioAssay data set
NPT689 Individual protein Histone deacetylase 5 Homo sapiens Ki > 2500.0 nM PMID[24900743]
NPT48 Individual protein Lysine-specific demethylase 4D-like Homo sapiens Potency = 7943.3 nM PubChem BioAssay data set
NPT48 Individual protein Lysine-specific demethylase 4D-like Homo sapiens Potency = 25118.9 nM PubChem BioAssay data set
NPT94 Individual protein Aldehyde dehydrogenase 1A1 Homo sapiens Potency = 14125.4 nM PubChem BioAssay data set
NPT54 Individual protein Nonstructural protein 1 Influenza A virus Potency = 17782.8 nM PubChem BioAssay data set
NPT69 Individual protein Matrix metalloproteinase-1 Homo sapiens Inhibition = 95.0 % PMID[21189019]
NPT567 Individual protein Matrix metalloproteinase 3 Homo sapiens Inhibition = 98.0 % PMID[21189019]
NPT692 Individual protein Histone deacetylase 6 Homo sapiens Ki > 2500.0 nM PMID[24900743]
NPT688 Individual protein Histone deacetylase 4 Homo sapiens Ki > 20000.0 nM PMID[24900743]
NPT684 Individual protein Histone deacetylase 1 Homo sapiens Ki > 2500.0 nM PMID[24900743]
NPT685 Individual protein Histone deacetylase 2 Homo sapiens Ki = 15.44 nM PMID[24900743]
NPT20556 Single protein Replicase polyprotein 1ab Severe acute respiratory syndrome coronavirus 2 Inhibition = 11.67 % DOI[10.6019/CHEMBL4495564]
NPT93 Individual protein Survival motor neuron protein Homo sapiens Potency = 8912.5 nM PubChem BioAssay data set
NPT51 Individual protein Microtubule-associated protein tau Homo sapiens Potency = 15848.9 nM PubChem BioAssay data set
NPT51 Individual protein Microtubule-associated protein tau Homo sapiens Potency = 31622.8 nM PubChem BioAssay data set
NPT792 Individual protein Arachidonate 15-lipoxygenase Homo sapiens Potency = 39810.7 nM PubChem BioAssay data set
NPT63 Individual protein Bromodomain adjacent to zinc finger domain protein 2B Homo sapiens Potency n.a. 56234.1 nM PubChem BioAssay data set
NPT741 Individual protein Tyrosinase Homo sapiens Ratio IC50 = 63.6 n.a. PMID[25288494]
NPT741 Individual protein Tyrosinase Homo sapiens IC50 = 8980.0 nM PMID[25288494]
NPT43 Individual protein Tyrosinase Agaricus bisporus IC50 = 90.0 nM PMID[25288494]
NPT43 Individual protein Tyrosinase Agaricus bisporus Ki = 60.0 nM PMID[20947360]
NPT53 Individual protein 4'-phosphopantetheinyl transferase ffp Bacillus subtilis Potency = 56234.1 nM PubChem BioAssay data set
NPT442 Individual protein Ferritin light chain Equus caballus Potency = 35481.3 nM PubChem BioAssay data set
NPT56 Individual protein Beta-lactamase AmpC Escherichia coli K-12 Potency = 3548.1 nM PubChem BioAssay data set
NPT539 Individual protein Cellular tumor antigen p53 Homo sapiens Potency = 12589.3 nM PubChem BioAssay data set
NPT570 Individual protein Arachidonate 5-lipoxygenase Homo sapiens Inhibition = -67.0 % PMID[21189019]
NPT568 Individual protein Matrix metalloproteinase-2 Homo sapiens Inhibition = 90.0 % PMID[21189019]
NPT43 Individual protein Tyrosinase Agaricus bisporus Inhibition = 54.0 % PMID[21189019]
NPT569 Individual protein Matrix metalloproteinase 8 Homo sapiens Inhibition = 100.0 % PMID[21189019]
NPT5 Individual protein Histone-lysine N-methyltransferase, H3 lysine-9 specific 3 Homo sapiens Potency n.a. 11220.2 nM PubChem BioAssay data set
NPT64 Individual protein ATPase family AAA domain-containing protein 5 Homo sapiens Potency n.a. 16353.5 nM PubChem BioAssay data set
NPT687 Individual protein Histone deacetylase 8 Homo sapiens Ki = 177.95 nM PMID[24900743]
NPT49 Individual protein DNA-(apurinic or apyrimidinic site) lyase Homo sapiens Potency n.a. 50118.7 nM PubChem BioAssay data set
NPT49 Individual protein DNA-(apurinic or apyrimidinic site) lyase Homo sapiens Potency n.a. 14125.4 nM PubChem BioAssay data set

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT1759 Cell line FM3A Mus musculus IC50 = 1100.0 nM PMID[1732542]
NPT1490 Cell line Ehrlich Mus musculus IC50 = 0.6 ug.mL-1 PMID[11975498]
NPT804 Cell line HT-22 Mus musculus EC50 = 4800.0 nM PMID[20045220]
NPT804 Cell line HT-22 Mus musculus Ratio EC50 = 1.0 n.a. PMID[20045220]
NPT804 Cell line HT-22 Mus musculus Efficacy = 62.0 % PMID[20045220]
NPT368 Cell line SN12C Homo sapiens GI50 n.a. 11194.38 nM PubChem BioAssay data set
NPT370 Cell line NCI-H23 Homo sapiens GI50 n.a. 8090.96 nM PubChem BioAssay data set
NPT369 Cell line ACHN Homo sapiens GI50 n.a. 3334.26 nM PubChem BioAssay data set
NPT371 Cell line UO-31 Homo sapiens GI50 n.a. 10519.62 nM PubChem BioAssay data set
NPT372 Cell line HOP-92 Homo sapiens GI50 n.a. 15922.09 nM PubChem BioAssay data set
NPT116 Cell line HL-60 Homo sapiens GI50 n.a. 2494.59 nM PubChem BioAssay data set
NPT373 Cell line SK-MEL-5 Homo sapiens GI50 n.a. 24547.09 nM PubChem BioAssay data set
NPT374 Cell line SF-539 Homo sapiens GI50 n.a. 5308.84 nM PubChem BioAssay data set
NPT375 Cell line Malme-3M Homo sapiens GI50 n.a. 12589.25 nM PubChem BioAssay data set
NPT376 Cell line A498 Homo sapiens GI50 n.a. 44055.49 nM PubChem BioAssay data set
NPT111 Cell line K562 Homo sapiens GI50 n.a. 6382.63 nM PubChem BioAssay data set
NPT377 Cell line OVCAR-3 Homo sapiens GI50 n.a. 4045.76 nM PubChem BioAssay data set
NPT112 Cell line MOLT-4 Homo sapiens GI50 n.a. 3176.87 nM PubChem BioAssay data set
NPT379 Cell line HOP-62 Homo sapiens GI50 n.a. 10864.26 nM PubChem BioAssay data set
NPT380 Cell line U-251 Homo sapiens GI50 n.a. 9120.11 nM PubChem BioAssay data set
NPT381 Cell line OVCAR-8 Homo sapiens GI50 n.a. 4446.31 nM PubChem BioAssay data set
NPT382 Cell line OVCAR-5 Homo sapiens GI50 n.a. 15703.63 nM PubChem BioAssay data set
NPT572 Cell line DMS-273 Homo sapiens GI50 n.a. 3828.25 nM PubChem BioAssay data set
NPT383 Cell line SNB-19 Homo sapiens GI50 n.a. 10864.26 nM PubChem BioAssay data set
NPT384 Cell line TK-10 Homo sapiens GI50 n.a. 58076.44 nM PubChem BioAssay data set
NPT385 Cell line SR Homo sapiens GI50 n.a. 2837.92 nM PubChem BioAssay data set
NPT323 Cell line SW-620 Homo sapiens GI50 n.a. 5902.01 nM PubChem BioAssay data set
NPT573 Cell line M19-MEL Homo sapiens GI50 n.a. 13304.54 nM PubChem BioAssay data set
NPT386 Cell line KM12 Homo sapiens GI50 n.a. 12387.97 nM PubChem BioAssay data set
NPT455 Cell line NCI-H522 Homo sapiens GI50 n.a. 3819.44 nM PubChem BioAssay data set
NPT387 Cell line M14 Homo sapiens GI50 n.a. 8491.8 nM PubChem BioAssay data set
NPT574 Cell line XF498 Homo sapiens GI50 n.a. 4236.43 nM PubChem BioAssay data set
NPT388 Cell line NCI-H322M Homo sapiens GI50 n.a. 11939.88 nM PubChem BioAssay data set
NPT389 Cell line RPMI-8226 Homo sapiens GI50 n.a. 7925.01 nM PubChem BioAssay data set
NPT390 Cell line LOX IMVI Homo sapiens GI50 n.a. 5058.25 nM PubChem BioAssay data set
NPT456 Cell line OVCAR-4 Homo sapiens GI50 n.a. 7227.7 nM PubChem BioAssay data set
NPT575 Cell line KM-20L2 Homo sapiens GI50 n.a. 4265.8 nM PubChem BioAssay data set
NPT147 Cell line SK-MEL-2 Homo sapiens GI50 n.a. 12133.89 nM PubChem BioAssay data set
NPT81 Cell line A549 Homo sapiens GI50 n.a. 9354.06 nM PubChem BioAssay data set
NPT391 Cell line HCC 2998 Homo sapiens GI50 n.a. 9225.71 nM PubChem BioAssay data set
NPT392 Cell line SNB-75 Homo sapiens GI50 n.a. 24378.11 nM PubChem BioAssay data set
NPT148 Cell line HCT-15 Homo sapiens GI50 n.a. 5140.44 nM PubChem BioAssay data set
NPT393 Cell line HCT-116 Homo sapiens GI50 n.a. 3908.41 nM PubChem BioAssay data set
NPT395 Cell line SF-268 Homo sapiens GI50 n.a. 6367.96 nM PubChem BioAssay data set
NPT394 Cell line EKVX Homo sapiens GI50 n.a. 17258.38 nM PubChem BioAssay data set
NPT731 Cell line LXFL 529 Homo sapiens GI50 n.a. 6854.88 nM PubChem BioAssay data set
NPT576 Cell line DMS-114 Homo sapiens GI50 n.a. 3715.35 nM PubChem BioAssay data set
NPT146 Cell line SK-OV-3 Homo sapiens GI50 n.a. 49431.07 nM PubChem BioAssay data set
NPT397 Cell line NCI-H460 Homo sapiens GI50 n.a. 6982.32 nM PubChem BioAssay data set
NPT308 Cell line CAKI-1 Homo sapiens GI50 n.a. 16069.41 nM PubChem BioAssay data set
NPT398 Cell line UACC-62 Homo sapiens GI50 n.a. 5794.29 nM PubChem BioAssay data set
NPT399 Cell line SF-295 Homo sapiens GI50 n.a. 6516.28 nM PubChem BioAssay data set
NPT458 Cell line IGROV-1 Homo sapiens GI50 n.a. 13520.73 nM PubChem BioAssay data set
NPT577 Cell line RXF 631 Homo sapiens GI50 n.a. 30549.21 nM PubChem BioAssay data set
NPT401 Cell line 786-0 Homo sapiens GI50 n.a. 5223.96 nM PubChem BioAssay data set
NPT403 Cell line UACC-257 Homo sapiens GI50 n.a. 4102.04 nM PubChem BioAssay data set
NPT578 Cell line SNB-78 Homo sapiens GI50 n.a. 48305.88 nM PubChem BioAssay data set
NPT404 Cell line CCRF-CEM Homo sapiens GI50 n.a. 2792.54 nM PubChem BioAssay data set
NPT579 Cell line DLD-1 Homo sapiens GI50 n.a. 5308.84 nM PubChem BioAssay data set
NPT405 Cell line NCI-H226 Homo sapiens GI50 n.a. 11015.39 nM PubChem BioAssay data set
NPT139 Cell line HT-29 Homo sapiens GI50 n.a. 4265.8 nM PubChem BioAssay data set
NPT170 Cell line SK-MEL-28 Homo sapiens GI50 n.a. 18879.91 nM PubChem BioAssay data set
NPT406 Cell line RXF 393 Homo sapiens GI50 n.a. 25409.73 nM PubChem BioAssay data set
NPT407 Cell line COLO 205 Homo sapiens GI50 n.a. 4236.43 nM PubChem BioAssay data set
NPT732 Cell line HOP-18 Homo sapiens GI50 n.a. 15310.87 nM PubChem BioAssay data set
NPT111 Cell line K562 Homo sapiens IC50 = 0.3 ug.mL-1 PMID[15187442]
NPT116 Cell line HL-60 Homo sapiens IC50 = 0.3 ug.mL-1 PMID[15187442]
NPT616 Cell line MDCK Canis lupus familiaris MIC = 10.0 ug.mL-1 PMID[15187442]
NPT2980 Cell line Colon 26 Mus musculus MIC = 10.0 ug.mL-1 PMID[15187442]
NPT1081 Cell line BXPC-3 Homo sapiens GI50 = 19000.0 nM PMID[24900743]
NPT393 Cell line HCT-116 Homo sapiens GI50 = 6920.0 nM PMID[24900743]
NPT708 Cell line HuT78 Homo sapiens GI50 = 4990.0 nM PMID[24900743]
NPT15 Cell line Jurkat Homo sapiens GI50 = 1100.0 nM PMID[24900743]
NPT323 Cell line SW-620 Homo sapiens Activity = 252.0 mg PMID[24308647]
NPT393 Cell line HCT-116 Homo sapiens Activity = 245.0 mg PMID[24308647]
NPT323 Cell line SW-620 Homo sapiens Activity = 80.3 % PMID[24308647]
NPT323 Cell line SW-620 Homo sapiens Activity = 53.1 % PMID[24308647]
NPT393 Cell line HCT-116 Homo sapiens Activity = 24.7 % PMID[24308647]
NPT393 Cell line HCT-116 Homo sapiens Activity = 15.6 % PMID[24308647]
NPT323 Cell line SW-620 Homo sapiens Activity = 1.5 % PMID[24308647]
NPT323 Cell line SW-620 Homo sapiens Activity = 87.0 % PMID[24308647]
NPT323 Cell line SW-620 Homo sapiens Activity = 11.5 % PMID[24308647]
NPT323 Cell line SW-620 Homo sapiens Activity = 7.2 % PMID[24308647]
NPT323 Cell line SW-620 Homo sapiens Activity = 51.9 % PMID[24308647]
NPT323 Cell line SW-620 Homo sapiens Activity = 40.8 % PMID[24308647]
NPT323 Cell line SW-620 Homo sapiens Activity = 4.5 % PMID[24308647]
NPT323 Cell line SW-620 Homo sapiens Activity = 52.4 % PMID[24308647]
NPT323 Cell line SW-620 Homo sapiens Activity = 43.1 % PMID[24308647]
NPT323 Cell line SW-620 Homo sapiens Activity = 6.8 % PMID[24308647]
NPT323 Cell line SW-620 Homo sapiens Activity = 47.7 % PMID[24308647]
NPT323 Cell line SW-620 Homo sapiens Activity = 45.6 % PMID[24308647]
NPT323 Cell line SW-620 Homo sapiens Activity = 8.4 % PMID[24308647]
NPT323 Cell line SW-620 Homo sapiens Activity = 43.3 % PMID[24308647]
NPT323 Cell line SW-620 Homo sapiens Activity = 48.3 % PMID[24308647]
NPT393 Cell line HCT-116 Homo sapiens Activity = 7.4 % PMID[24308647]
NPT393 Cell line HCT-116 Homo sapiens Activity = 53.8 % PMID[24308647]
NPT393 Cell line HCT-116 Homo sapiens Activity = 38.8 % PMID[24308647]
NPT393 Cell line HCT-116 Homo sapiens Activity = 11.9 % PMID[24308647]
NPT393 Cell line HCT-116 Homo sapiens Activity = 43.5 % PMID[24308647]
NPT393 Cell line HCT-116 Homo sapiens Activity = 44.6 % PMID[24308647]
NPT393 Cell line HCT-116 Homo sapiens Activity = 7.7 % PMID[24308647]
NPT393 Cell line HCT-116 Homo sapiens Activity = 37.2 % PMID[24308647]
NPT393 Cell line HCT-116 Homo sapiens Activity = 55.1 % PMID[24308647]
NPT393 Cell line HCT-116 Homo sapiens Activity = 8.0 % PMID[24308647]
NPT393 Cell line HCT-116 Homo sapiens Activity = 35.4 % PMID[24308647]
NPT393 Cell line HCT-116 Homo sapiens Activity = 56.5 % PMID[24308647]
NPT393 Cell line HCT-116 Homo sapiens Activity = 7.5 % PMID[24308647]
NPT393 Cell line HCT-116 Homo sapiens Activity = 34.4 % PMID[24308647]
NPT393 Cell line HCT-116 Homo sapiens Activity = 58.1 % PMID[24308647]
NPT393 Cell line HCT-116 Homo sapiens Activity = 27.0 % PMID[24308647]
NPT323 Cell line SW-620 Homo sapiens GI = 63.0 % PMID[24308647]
NPT323 Cell line SW-620 Homo sapiens IC50 = 4400.0 nM PMID[24308647]
NPT393 Cell line HCT-116 Homo sapiens IC50 = 4500.0 nM PMID[24308647]
NPT91 Cell line KB Homo sapiens ID50 = 0.5 ug ml-1 PMID[6502608]
NPT91 Cell line KB Homo sapiens ID50 = 3.6 nM ml-1 PMID[6502608]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum Potency n.a. 3294.4 nM PubChem BioAssay data set
NPT6 Organism Plasmodium falciparum Plasmodium falciparum Potency n.a. 2936.2 nM PubChem BioAssay data set
NPT2974 Organism Daedalea dickinsii Daedalea dickinsii MIC = 0.2 ug.mL-1 PMID[10963310]
NPT2975 Organism Colletotrichum orbiculare Colletotrichum orbiculare MIC = 25.0 ug.mL-1 PMID[15187442]
NPT20555 Organism SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Inhibition = 0.25 % DOI[10.6019/CHEMBL4495565]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 = 0.6 ug.mL-1 PMID[11975498]
NPT2972 Organism Pycnoporus coccineus Pycnoporus coccineus MIC = 12.5 ug.mL-1 PMID[10963310]
NPT2550 Organism Lenzites betulinus Lenzites betulinus MIC = 12.5 ug.mL-1 PMID[10963310]
NPT2973 Organism Schizophyllum commune Schizophyllum commune MIC = 12.5 ug.mL-1 PMID[10963310]
NPT834 Organism Trametes versicolor Trametes versicolor MIC = 12.5 ug.mL-1 PMID[10963310]
NPT635 Organism Botryotinia fuckeliana Botryotinia fuckeliana MIC = 50.0 ug.mL-1 PMID[15187442]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 = 0.3 ug.mL-1 PMID[15187442]
NPT1465 Organism Legionella pneumophila Legionella pneumophila MIC = 25.0 ug.mL-1 PMID[15187442]
NPT1465 Organism Legionella pneumophila Legionella pneumophila MIC = 6.25 ug.mL-1 PMID[15187442]
NPT852 Organism Phomopsis obscurans Phomopsis obscurans MIC = 12.0 ug.mL-1 PMID[15187442]
NPT2600 Organism Fusarium solani Fusarium solani MIC = 50.0 ug.mL-1 PMID[15187442]
NPT961 Organism Pythium aphanidermatum Pythium aphanidermatum MIC = 12.0 ug.mL-1 PMID[15187442]
NPT2254 Organism Schistosoma mansoni Schistosoma mansoni In vitro activity n.a. n.a. n.a. Using ChEMBL to complement schistosome drug discovery
NPT167 Organism Propionibacterium acnes Propionibacterium acnes MIC = 12.5 ug.mL-1 PMID[8158169]
NPT2 Others Unspecified n.a. Potency = 10000.0 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency = 1835.6 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency = 35481.3 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency = 28183.8 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. IC50 = 2267.0 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. IC50 = 3890.0 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 8912.5 nM PubChem BioAssay data set
NPT2637 Organism Colletotrichum lagenarium Colletotrichum lagenarium MIC = 25.0 ug.mL-1 PMID[15187442]
NPT2976 Organism Thanatephorus cucumeris Thanatephorus cucumeris MIC = 12.0 ug.mL-1 PMID[15187442]
NPT2 Others Unspecified n.a. Potency n.a. 39810.7 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 22387.2 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 35481.3 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Ratio IC50 = 99.78 n.a. PMID[25288494]
NPT2 Others Unspecified n.a. Inhibition = 100.0 % PMID[27094954]
NPT2 Others Unspecified n.a. Inhibition = 99.0 % PMID[27094954]
NPT2 Others Unspecified n.a. Inhibition = 79.0 % PMID[27094954]
NPT2 Others Unspecified n.a. Inhibition = 12.0 % PMID[27094954]
NPT2 Others Unspecified n.a. Inhibition = 98.0 % PMID[27094954]

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT32 Organism Mus musculus Mus musculus T/C = 0.0 % PMID[6502608]
NPT32 Organism Mus musculus Mus musculus T/C = 62.0 % PMID[6502608]
NPT32 Organism Mus musculus Mus musculus T/C = 100.0 % PMID[6502608]
NPT32 Organism Mus musculus Mus musculus T/C = 103.0 % PMID[6502608]
NPT2524 Organism Tyrophagus putrescentiae Tyrophagus putrescentiae mortality = 0.0 % PMID[10963310]
NPT2524 Organism Tyrophagus putrescentiae Tyrophagus putrescentiae mortality = 11.9 % PMID[10963310]
NPT2524 Organism Tyrophagus putrescentiae Tyrophagus putrescentiae mortality = 33.6 % PMID[10963310]
NPT2524 Organism Tyrophagus putrescentiae Tyrophagus putrescentiae mortality = 91.3 % PMID[10963310]
NPT2524 Organism Tyrophagus putrescentiae Tyrophagus putrescentiae mortality = 100.0 % PMID[10963310]
NPT2524 Organism Tyrophagus putrescentiae Tyrophagus putrescentiae mortality = 77.5 % PMID[14519960]
NPT2524 Organism Tyrophagus putrescentiae Tyrophagus putrescentiae mortality = 55.5 % PMID[14519960]
NPT489 Organism Coptotermes formosanus Coptotermes formosanus mortality = 0.0 % PMID[10963310]
NPT489 Organism Coptotermes formosanus Coptotermes formosanus mortality = 20.0 % PMID[14519960]
NPT489 Organism Coptotermes formosanus Coptotermes formosanus mortality = 50.0 % PMID[14519960]
NPT489 Organism Coptotermes formosanus Coptotermes formosanus mortality = 100.0 % PMID[10963310]
NPT489 Organism Coptotermes formosanus Coptotermes formosanus mortality = 10.0 % PMID[10963310]
NPT489 Organism Coptotermes formosanus Coptotermes formosanus mortality = 40.0 % PMID[10963310]
NPT2525 Organism Dermatophagoides farinae Dermatophagoides farinae mortality = 18.8 % PMID[14519960]
NPT2525 Organism Dermatophagoides farinae Dermatophagoides farinae mortality = 45.2 % PMID[14519960]
NPT2525 Organism Dermatophagoides farinae Dermatophagoides farinae mortality = 96.3 % PMID[14519960]
NPT2525 Organism Dermatophagoides farinae Dermatophagoides farinae mortality = 100.0 % PMID[14519960]
NPT2525 Organism Dermatophagoides farinae Dermatophagoides farinae mortality = 7.8 % PMID[14519960]
NPT2525 Organism Dermatophagoides farinae Dermatophagoides farinae mortality = 2.6 % PMID[15187442]
NPT2525 Organism Dermatophagoides farinae Dermatophagoides farinae mortality = 11.9 % PMID[15187442]
NPT2525 Organism Dermatophagoides farinae Dermatophagoides farinae mortality = 0.0 % PMID[15187442]
NPT2525 Organism Dermatophagoides farinae Dermatophagoides farinae mortality = 99.0 % PMID[15187442]
NPT847 Organism Reticulitermes speratus Reticulitermes speratus mortality = 0.0 % PMID[15187442]
NPT847 Organism Reticulitermes speratus Reticulitermes speratus mortality = 100.0 % PMID[15187442]
NPT847 Organism Reticulitermes speratus Reticulitermes speratus mortality = 13.3 % PMID[15187442]





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference
Mus musculus Liver T1/2 = 1.0 hr PMID[24900743]





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference
- Tyrophagus putrescentiae LC50 = 0.24 g/m2 PMID[14519960]
- Tyrophagus putrescentiae LC50 = 0.246 g/m2 PMID[10963310]
- Dermatophagoides farinae LC50 = 0.37 g/m2 PMID[14519960]
- Coptotermes formosanus LC50 = 0.08 g/m2 PMID[14519960]
- Coptotermes formosanus LC50 = 0.07 g/m2 PMID[10963310]
- Reticulitermes speratus LC50 = 0.03 g/m2 PMID[15187442]

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC46565 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
0.5588 Remote Similarity NPC229046
0.5143 Remote Similarity NPC281195

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC46565 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
NPD

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data