Natural Product: NPC37947| Natural Product ID | NPC37947 |
|
Common Name
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
| UWKAYLJWKGQEPM-LBPRGKRZSA-N |
| IUPAC Name | n.a. |
| Synonyms | |
| Synthetic Gene Cluster | n.a. |
| ChEMBL Identifier | n.a. |
| PubChem CID |
442474 |
| Chemical Classification |
|
The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.
Chemical Representations
| Standard InCHIKey | UWKAYLJWKGQEPM-LBPRGKRZSA-N |
| Standard InCHI | InChI=1S/C12H20O2/c1-6-12(5,14-11(4)13)9-7-8-10(2)3/h6,8H,1,7,9H2,2-5H3/t12-/m0/s1 |
| SMILES | C=C[C@@](C)(CCC=C(C)C)OC(=O)C |
  Calculated Properties| Molecular Weight:   | 196.15 | Volume:   | 225.779 Van der Waals volume.
|
| Dense:   | 0.869 | LogP:   | 3.271 The logarithm of the n-octanol/water distribution coefficients.
|
| logD7.4:   | 2.835 The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
|
LogS:   | -2.802 The logarithm of aqueous solubility value.
|
| Rotatable Bonds:   | 6.0 | Rigid Bonds:   | 3.0 |
| TPSA:   | 26.3 Topological Polar Surface Area.
|
H-Bond Acceptor:   | 2.0 |
| H-Bond Donor:   | 0.0 | Rings:   | 0.0 |
| Heavy Atoms:   | 2.0 |
| QED Drug-Likeness Score:   | 0.498 | GASA:   | 0.0 GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
|
| Synthetic Accessibility Score:   | 3.408 | Fsp3:   | 0.583 |
| MCE-18:   | 5.0 MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
|
Lipinski Rule-of-5:   | Rejected |
| Pfizer Rule:   | Accepted | GSK Rule:   | Rejected |
| Golden Triangle Rule:   | Accepted | BMS Rule:   | 0 |
| Chelating Alert:   | 0 | PAINS Alert:   | 0 |
| Colloidal aggregators:   | 0.052 | Fluc inhibitor:   | 0.0 The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
|
| Blue fluorescence:   | 0.001 The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
|
Green fluorescence:   | 0.001 The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
|
| Reactive compounds:   | 0.999 | Promiscuous compounds:   | 0.109 |
| Caco-2 Permeability:   | -4.489 | MDCK Permeability:   | -4.786 |
| Pgp-inhibitor:   | 0.989 | Pgp-substrate:   | 0.026 |
| PAMPA:   |
0.092 The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
|
Human Intestinal Absorption (HIA):   | 0.05 |
| 20% Bioavailability (F20%):   | 0.964 | 30% Bioavailability (F30%):   | 0.993 |
| 50% Bioavailability (F50%):   | 0.999 |
| Blood-Brain-Barrier Penetration (BBB):   | 0.025 | MRP1:   | 0.883 |
| Plasma Protein Binding (PPB):   | 70.942% | Volume Distribution (VD):   | 0.068 |
| Fu: |
29.085% The fraction unbound in plasms.
|
OATP1B1 inhibitor:   | 1.0 |
| OATP1B3 inhibitor:   | 0.991 | BCRP inhibitor:   | 0.972 |
| BSEP inhibitor:   | 0.793 |
| CYP1A2-inhibitor:   | 0.007 | CYP1A2-substrate:   | 0.563 |
| CYP2C19-inhibitor:   | 0.192 | CYP2C19-substrate:   | 0.014 |
| CYP2C9-inhibitor:   | 0.087 | CYP2C9-substrate:   | 0.068 |
| CYP2D6-inhibitor:   | 0.016 | CYP2D6-substrate:   | 0.524 |
| CYP3A4-inhibitor:   | 0.25 | CYP3A4-substrate:   | 0.687 |
| CYP2B6-substrate:   | 0.017 | CYP2C8-inhibitor:   | 0.943 |
| HLM stability:   |
0.94 Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.
|
| Clearance (CL):   | 8.077 | Half-life (T1/2):   | 0.562 |
| hERG Blockers:   | 0.028 | hERG Blockers (10um):   | 0.441 |
| Human Hepatotoxicity (H-HT):   | 0.363 | Drug-induced Liver Injury (DILI):   | 0.09 |
| AMES Toxicity:   | 0.151 | Rat Oral Acute Toxicity:   | 0.259 |
| Maximum Recommended Daily Dose:   | 0.202 | Skin Sensitization:   | 0.98 |
| Carcinogencity:   | 0.535 | Eye Corrosion:   | 0.999 |
| Eye Irritation:   | 0.999 | Respiratory Toxicity:   | 0.614 |
| Drug-induced Neurotoxicity:   | 0.265 | Ototoxicity:   | 0.108 |
| Hematotoxicity:   | 0.132 | Drug-induced Nephrotoxicity:   | 0.066 |
| Genotoxicity:   | 0.074 | RPMI-8226 Immunitoxicity:   | 0.038 |
| A549 Cytotoxicity:   | 0.104 | Hek293 Cytotoxicity:   | 0.101 |
| BCF:   |
1.47 Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
|
IGC50:   |
3.77 48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
|
| LC50DM:   |
5.406 48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
|
LC50FM:   |
4.87 96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].
|
  Species Source| Organism ID | Organism Name | Taxonomy Level | Family | SuperKingdom | Isolation Part | Collection Location | Collection Time | Reference |
|---|---|---|---|---|---|---|---|---|
| NPO26992 | Sophora leachiana | Species | Fabaceae | Eukaryota | n.a. | root | n.a. | DOI[10.1016/0031-9422(90)85209-X] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | n.a. | DOI[10.1016/0045-6535(91)90110-Y] | |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | DOI[10.1016/j.abb.2017.09.009] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | DOI[10.1016/j.jfca.2004.07.004] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | DOI[10.1016/j.jfca.2005.08.001] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | retail stores, supermarkets and market stalls in Forssa and in the Helsinki area | 2003–2005 | DOI[10.1016/j.jfca.2006.05.007] |
| NPO27288 | Citrus maxima | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | DOI[10.1016/S0031-9422(99)00119-3] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | DOI[10.1016/S0885-5765(05)80069-4] |
| NPO26409 | Plakortis simplex | Species | Plakinidae | Eukaryota | n.a. | Caribbean | n.a. |
PMID[10021943] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | n.a. | 1996-Sep |
PMID[10352947] |
| NPO7317 | Citrus aurantium | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[10606602] |
| NPO26409 | Plakortis simplex | Species | Plakinidae | Eukaryota | n.a. | Taiwan | n.a. |
PMID[11277748] |
| NPO17534 | Uvaria chamae | Species | Annonaceae | Eukaryota | roots | n.a. | n.a. |
PMID[15217292] |
| NPO9290 | Zanthoxylum piperitum | Species | Rutaceae | Eukaryota | n.a. | leaf | n.a. |
PMID[15388977] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[15877880] |
| NPO26409 | Plakortis simplex | Species | Plakinidae | Eukaryota | n.a. | n.a. | n.a. |
PMID[15921424] |
| NPO9290 | Zanthoxylum piperitum | Species | Rutaceae | Eukaryota | n.a. | stem | n.a. |
PMID[17202689] |
| NPO5241 | Myristica fragrans | Species | Myristicaceae | Eukaryota | seeds | n.a. | n.a. |
PMID[17998162] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[18460139] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | Northeastern Regional Plant Introduction Station at Geneva | 1966, 1967, and 1968 crop seasons |
PMID[18460139] |
| NPO17043 | Lycopodium casuarinoides | Species | Lycopodiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[18485717] |
| NPO26203 | Dysidea villosa | Species | Dysideidae | Eukaryota | n.a. | Hainan, China | n.a. |
PMID[19091557] |
| NPO5241 | Myristica fragrans | Species | Myristicaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[1955885] |
| NPO9290 | Zanthoxylum piperitum | Species | Rutaceae | Eukaryota | n.a. | pericarp | n.a. |
PMID[20628994] |
| NPO5241 | Myristica fragrans | Species | Myristicaceae | Eukaryota | n.a. | fruit | n.a. |
PMID[20879744] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[21800857] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | root | n.a. |
PMID[21800857] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | exocarp | n.a. |
PMID[21800857] |
| NPO26409 | Plakortis simplex | Species | Plakinidae | Eukaryota | n.a. | n.a. | n.a. |
PMID[23806071] |
| NPO5315 | Zanthoxylum bungeanum | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[24175626] |
| NPO26409 | Plakortis simplex | Species | Plakinidae | Eukaryota | n.a. | China | n.a. |
PMID[25115700] |
| NPO18951 | Ligusticum sinense | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[26521454] |
| NPO26298 | Zanthoxylum simulans | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[26666037] |
| NPO5241 | Myristica fragrans | Species | Myristicaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[27419473] |
| NPO25406 | Celastrus monospermus | Species | Celastraceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[28006915] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[2831703] |
| NPO5241 | Myristica fragrans | Species | Myristicaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[32515616] |
| NPO5241 | Myristica fragrans | Species | Myristicaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[33444950] |
| NPO7317 | Citrus aurantium | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[35268681] |
| NPO8698 | Zanthoxylum schinifolium | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[35537359] |
| NPO18952 | Sambucus nigra | Species | Adoxaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[36675004] |
| NPO5315 | Zanthoxylum bungeanum | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[36786362] |
| NPO8698 | Zanthoxylum schinifolium | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[37029634] |
| NPO5315 | Zanthoxylum bungeanum | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[37029634] |
| NPO5315 | Zanthoxylum bungeanum | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[37049761] |
| NPO27288 | Citrus maxima | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[37049761] |
| NPO18952 | Sambucus nigra | Species | Adoxaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[37570937] |
| NPO18952 | Sambucus nigra | Species | Adoxaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[37759401] |
| NPO7317 | Citrus aurantium | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[38308284] |
| NPO7698 | Elettaria cardamomum | Species | Zingiberaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[38868673] |
| NPO7698 | Elettaria cardamomum | Species | Zingiberaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[38999684] |
| NPO7317 | Citrus aurantium | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[39410132] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[6821187] |
| NPO19935 | Evodia rutaecarpa | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[7463094] |
| NPO26298 | Zanthoxylum simulans | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[7798955] |
| NPO17043 | Lycopodium casuarinoides | Species | Lycopodiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[7931368] |
| NPO19935 | Evodia rutaecarpa | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[8201313] |
| NPO17534 | Uvaria chamae | Species | Annonaceae | Eukaryota | n.a. | root | n.a. |
PMID[845713] |
| NPO19935 | Evodia rutaecarpa | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[8699182] |
| NPO7317 | Citrus aurantium | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO5241 | Myristica fragrans | Species | Myristicaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO18952 | Sambucus nigra | Species | Adoxaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO25406 | Celastrus monospermus | Species | Celastraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO26160 | Thielavia terricola | Species | Chaetomiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO12942 | Amphimedon terpenensis | Species | Niphatidae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO12304 | Ascocoryne sarcoides | Species | Helotiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO16185 | Astilbe odontophylla | Species | Saxifragaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO21316.1 | Barbarea vulgaris subsp. arcuata | Subspecies | Brassicaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO27288 | Citrus maxima | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO18465 | Cryptocarya triplinervis | Species | Lauraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO7698 | Elettaria cardamomum | Species | Zingiberaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO5453.1 | Euphorbia officinarum subsp. echinus | Subspecies | Euphorbiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO19654 | Hydnocarpus venenata | Species | Achariaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO17043 | Lycopodium casuarinoides | Species | Lycopodiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO19264 | Macleaya cordata | Species | Papaveraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO18691 | Mycale cecilia | Species | Mycalidae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO15102 | Senegalia tenuifolia | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO18199 | Thermotoga maritima | Species | Thermotogaceae | Bacteria | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO17534 | Uvaria chamae | Species | Annonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO5315 | Zanthoxylum bungeanum | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO8698 | Zanthoxylum schinifolium | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO11474 | Ligusticum jeholense | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO26298 | Zanthoxylum simulans | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO1267 | Acronychia laurifolia | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO25802 | Agave deserti | Species | Asparagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO25201 | Aglaia pyramidata | Species | Meliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO25833 | Asclepias subulata | Species | Apocynaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO25122 | Conium maculatum | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO26203 | Dysidea villosa | Species | Dysideidae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO22890 | Eutrochium purpureum | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO3963 | Hortonia floribunda | Species | Monimiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO19672 | Hosta sieboldiana | Species | Asparagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO22264 | Inula salsoloides | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO24918 | Jacobaea cannabifolia | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO26690 | Lactarius subpiperatus | Species | Lactariidae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO24478 | Morinda coreia | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO9324 | Notechis scutatus | Species | Elapidae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO26849 | Parmelia zollingeri | Species | Parmeliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO3005 | Passiflora morifolia | Species | Passifloraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO26409 | Plakortis simplex | Species | Plakinidae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO25259 | Schrebera swietenoides | Species | Oleaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO25358 | Senecio gilliesi | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO25714 | Solanum spirale | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO26992 | Sophora leachiana | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO13313 | Talipariti tiliaceum | Species | Malvaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO26789 | Tephrosia bidwilli | Species | Geometridae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO28636 | Vernonia lilacina | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO24547 | Xanthoria parietina | Species | Teloschistaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO18951 | Ligusticum sinense | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO2154 | Ligusticum tenuissimum | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO16845 | Euodia bodinieri | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO4877 | Euodia officinalis | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO8314 | Euodia ruticarpa | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO5241 | Myristica fragrans | Species | Myristicaceae | Eukaryota | n.a. | n.a. | Database[FooDB] | |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | n.a. | Database[FooDB] | |
| NPO5241 | Myristica fragrans | Species | Myristicaceae | Eukaryota | Aril | n.a. | n.a. | Database[FooDB] |
| NPO5241 | Myristica fragrans | Species | Myristicaceae | Eukaryota | Bark | n.a. | n.a. | Database[FooDB] |
| NPO18952 | Sambucus nigra | Species | Adoxaceae | Eukaryota | Flower | n.a. | n.a. | Database[FooDB] |
| NPO7698 | Elettaria cardamomum | Species | Zingiberaceae | Eukaryota | Fruit | n.a. | n.a. | Database[FooDB] |
| NPO18952 | Sambucus nigra | Species | Adoxaceae | Eukaryota | Fruit | n.a. | n.a. | Database[FooDB] |
| NPO5241 | Myristica fragrans | Species | Myristicaceae | Eukaryota | Leaf | n.a. | n.a. | Database[FooDB] |
| NPO18952 | Sambucus nigra | Species | Adoxaceae | Eukaryota | Leaf | n.a. | n.a. | Database[FooDB] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | Leaf | n.a. | n.a. | Database[FooDB] |
| NPO5241 | Myristica fragrans | Species | Myristicaceae | Eukaryota | Leaf Essent. Oil | n.a. | n.a. | Database[FooDB] |
| NPO7698 | Elettaria cardamomum | Species | Zingiberaceae | Eukaryota | Plant | n.a. | n.a. | Database[FooDB] |
| NPO18952 | Sambucus nigra | Species | Adoxaceae | Eukaryota | Plant | n.a. | n.a. | Database[FooDB] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | Plant | n.a. | n.a. | Database[FooDB] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | Root | n.a. | n.a. | Database[FooDB] |
| NPO7698 | Elettaria cardamomum | Species | Zingiberaceae | Eukaryota | Seed | n.a. | n.a. | Database[FooDB] |
| NPO5241 | Myristica fragrans | Species | Myristicaceae | Eukaryota | Seed | n.a. | n.a. | Database[FooDB] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | Seed | n.a. | n.a. | Database[FooDB] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | Shoot | n.a. | n.a. | Database[FooDB] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | Tissue Culture | n.a. | n.a. | Database[FooDB] |
| NPO27288 | Citrus maxima | Species | Rutaceae | Eukaryota | n.a. | n.a. | Database[FooDB] | |
| NPO7698 | Elettaria cardamomum | Species | Zingiberaceae | Eukaryota | n.a. | n.a. | Database[FooDB] | |
| NPO18952 | Sambucus nigra | Species | Adoxaceae | Eukaryota | n.a. | n.a. | Database[FooDB] | |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | Fruit | n.a. | n.a. | Database[FooDB] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | Roots | n.a. | Database[FooDB] | |
| NPO5241 | Myristica fragrans | Species | Myristicaceae | Eukaryota | n.a. | n.a. | Database[FooDB] | |
| NPO7698 | Elettaria cardamomum | Species | Zingiberaceae | Eukaryota | n.a. | n.a. | Database[FooDB] | |
| NPO5315 | Zanthoxylum bungeanum | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO5241 | Myristica fragrans | Species | Myristicaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO7317 | Citrus aurantium | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO11474 | Ligusticum jeholense | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO8698 | Zanthoxylum schinifolium | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO25122 | Conium maculatum | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO18951 | Ligusticum sinense | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO19264 | Macleaya cordata | Species | Papaveraceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO9290 | Zanthoxylum piperitum | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO17534 | Uvaria chamae | Species | Annonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO19672 | Hosta sieboldiana | Species | Asparagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO26298 | Zanthoxylum simulans | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO26992 | Sophora leachiana | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO18952 | Sambucus nigra | Species | Adoxaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO24478 | Morinda coreia | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | n.a. | Database[Phenol-Explorer] | |
| NPO27288 | Citrus maxima | Species | Rutaceae | Eukaryota | n.a. | n.a. | Database[Phenol-Explorer] | |
| NPO5241 | Myristica fragrans | Species | Myristicaceae | Eukaryota | n.a. | n.a. | Database[Phenol-Explorer] | |
| NPO7698 | Elettaria cardamomum | Species | Zingiberaceae | Eukaryota | n.a. | n.a. | Database[Phenol-Explorer] | |
| NPO19935 | Evodia rutaecarpa | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO24478 | Morinda coreia | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO5241 | Myristica fragrans | Species | Myristicaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO5315 | Zanthoxylum bungeanum | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO18951 | Ligusticum sinense | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO19264 | Macleaya cordata | Species | Papaveraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO26298 | Zanthoxylum simulans | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO8698 | Zanthoxylum schinifolium | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO7317 | Citrus aurantium | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO17534 | Uvaria chamae | Species | Annonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO27288 | Citrus maxima | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO13313 | Talipariti tiliaceum | Species | Malvaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO26992 | Sophora leachiana | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO25122 | Conium maculatum | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO18952 | Sambucus nigra | Species | Adoxaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO11474 | Ligusticum jeholense | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO19672 | Hosta sieboldiana | Species | Asparagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO9290 | Zanthoxylum piperitum | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO17043 | Lycopodium casuarinoides | Species | Lycopodiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO5241 | Myristica fragrans | Species | Myristicaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO25122 | Conium maculatum | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO8698 | Zanthoxylum schinifolium | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO7317 | Citrus aurantium | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO26298 | Zanthoxylum simulans | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO18951 | Ligusticum sinense | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO19672 | Hosta sieboldiana | Species | Asparagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO9290 | Zanthoxylum piperitum | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO5315 | Zanthoxylum bungeanum | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO11474 | Ligusticum jeholense | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO5241 | Myristica fragrans | Species | Myristicaceae | Eukaryota | n.a. | n.a. | n.a. | Database[Title] |
| NPO2154 | Ligusticum tenuissimum | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO7317 | Citrus aurantium | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO18951 | Ligusticum sinense | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO4877 | Euodia officinalis | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO7698 | Elettaria cardamomum | Species | Zingiberaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO9290 | Zanthoxylum piperitum | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO8314 | Euodia ruticarpa | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO27288 | Citrus maxima | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO5315 | Zanthoxylum bungeanum | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO8698 | Zanthoxylum schinifolium | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO16845 | Euodia bodinieri | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO19935 | Evodia rutaecarpa | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO11474 | Ligusticum jeholense | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO5241 | Myristica fragrans | Species | Myristicaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO22890 | Eutrochium purpureum | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO5241 | Myristica fragrans | Species | Myristicaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO7698 | Elettaria cardamomum | Species | Zingiberaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO25201 | Aglaia pyramidata | Species | Meliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO24478 | Morinda coreia | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO3963 | Hortonia floribunda | Species | Monimiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO11474 | Ligusticum jeholense | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO26298 | Zanthoxylum simulans | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO19672 | Hosta sieboldiana | Species | Asparagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO12942 | Amphimedon terpenensis | Species | Niphatidae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO9324 | Notechis scutatus | Species | Elapidae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO26160 | Thielavia terricola | Species | Chaetomiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO26849 | Parmelia zollingeri | Species | Parmeliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO5315 | Zanthoxylum bungeanum | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO25833 | Asclepias subulata | Species | Apocynaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO15102 | Senegalia tenuifolia | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO25406 | Celastrus monospermus | Species | Celastraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO26409 | Plakortis simplex | Species | Plakinidae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO24918 | Jacobaea cannabifolia | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO26690 | Lactarius subpiperatus | Species | Lactariidae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO26203 | Dysidea villosa | Species | Dysideidae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO17043 | Lycopodium casuarinoides | Species | Lycopodiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO25802 | Agave deserti | Species | Asparagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO25122 | Conium maculatum | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO16185 | Astilbe odontophylla | Species | Saxifragaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO27288 | Citrus maxima | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO7317 | Citrus aurantium | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO3005 | Passiflora morifolia | Species | Passifloraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO26992 | Sophora leachiana | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28636 | Vernonia lilacina | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO25358 | Senecio gilliesi | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO22264 | Inula salsoloides | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO12304 | Ascocoryne sarcoides | Species | Helotiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO25259 | Schrebera swietenoides | Species | Oleaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO18199 | Thermotoga maritima | Species | Thermotogaceae | Bacteria | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO24547 | Xanthoria parietina | Species | Teloschistaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO5453.1 | Euphorbia officinarum subsp. echinus | Subspecies | Euphorbiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO19264 | Macleaya cordata | Species | Papaveraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO18952 | Sambucus nigra | Species | Adoxaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO17534 | Uvaria chamae | Species | Annonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO19935 | Evodia rutaecarpa | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO26789 | Tephrosia bidwilli | Species | Geometridae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO1267 | Acronychia laurifolia | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO13313 | Talipariti tiliaceum | Species | Malvaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO18691 | Mycale cecilia | Species | Mycalidae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO18465 | Cryptocarya triplinervis | Species | Lauraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO9290 | Zanthoxylum piperitum | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO25714 | Solanum spirale | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO21316.1 | Barbarea vulgaris subsp. arcuata | Subspecies | Brassicaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO19654 | Hydnocarpus venenata | Species | Achariaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO163 | Daucus carota | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO8698 | Zanthoxylum schinifolium | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO18951 | Ligusticum sinense | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].
  NP Quantity Composition/Concentration| Organism ID | Organism Name | Organism Material Preparation | Organism Part | NP Quantity (Standard) | NP Quantity (Minimum) | NP Quantity (Maximum) | Quantity Unit | Reference |
|---|
Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].
Biological Activity
| Target ID | Target Type | Target Name | Target Organism | Activity Type | Activity Relation | Value | Unit | Reference |
|---|
| Target ID | Target Type | Target Name | Target Organism | Activity Type | Activity Relation | Value | Unit | Reference |
|---|
| Target ID | Target Type | Target Name | Target Organism | Activity Type | Activity Relation | Value | Unit | Reference |
|---|
Experimental ADME
| Experiment Model | Experiment Tissue | ADME Type | ADME Relation | ADME Value | ADME Unit | Reference |
|---|
Experimental Toxicity
| Experiment Model | Experiment Organism | Toxicity Type | Toxicity Relation | Toxicity Value | Toxicity Unit | Reference |
|---|
Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria
| Hepatotoxicity | Carcinogenicity | Mutagenicity | Cardiotoxicity | Respiratory Toxicity | Eye Irritation | Endocrine Disruption |
|---|---|---|---|---|---|---|
|
|
|
|
|
|
|
Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
☉ ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
☉ TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]
  Chemically structural similarityTop-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)
Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.
●  The left chart: Distribution of similarity level between NPC37947 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).
Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.
●  The left chart: Distribution of similarity level between NPC37947 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).
| Similarity Score | Similarity Level | Drug ID | Developmental Stage |
|---|---|---|---|
| NPD |
  Bioactivity similaritySimilarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.
