Natural Product: NPC17839
Natural Product ID:   | NPC17839 |
Common Name*:   | JSGVRMXIAILPPO-CONUGEHTSA-N |
IUPAC Name:   | n.a. |
Synonyms:   | |
Standard InCHIKey:   | JSGVRMXIAILPPO-CONUGEHTSA-N |
Standard InCHI:   | InChI=1S/C24H38O5/c1-9-23(7,27)13-14-24(8)15(2)20(28-16(3)25)21(29-17(4)26)19-18(24)11-10-12-22(19,5)6/h9,15,20-21,27H,1,10-14H2,2-8H3/t15-,20-,21+,23-,24-/m1/s1 |
SMILES:   | C=C[C@](C)(CC[C@]1(C)[C@H](C)[C@H]([C@H](C2=C1CCCC2(C)C)OC(=O)C)OC(=O)C)O
|
Synthetic Gene Cluster:   |
n.a. |
ChEMBL Identifier:   |
n.a. |
PubChem CID:   |
n.a. |
Chemical Classification**:   |
-
CHEMONTID:0000000 [Organic compounds]
-
[CHEMONTID:0000264] Organic acids and derivatives
-
[CHEMONTID:0000265] Carboxylic acids and derivatives
[CHEMONTID:0000346] Dicarboxylic acids and derivatives
|
*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.
  Species Source
Organism ID |
Organism Name |
Taxonomy Level |
Family |
SuperKingdom |
Isolation Part |
Collection Location |
Collection Time |
Reference |
NPO21373 |
Vitex trifolia |
Species |
Lamiaceae |
Eukaryota |
n.a. |
fruit |
n.a. |
PMID[15577254] |
NPO21373 |
Vitex trifolia |
Species |
Lamiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[15621610] |
NPO17785 |
Avrainvillea nigricans |
Species |
Udoteaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[16180830] |
NPO22123 |
Disepalum plagioneurum |
Species |
Annonaceae |
Eukaryota |
leaves |
Tam Kim, Cao Bang Province, in North Vietnam |
2000-JUN |
PMID[16989521] |
NPO20954 |
Haloxylon salicornicum |
Species |
Chenopodiaceae |
Eukaryota |
whole plant |
Cholistan desert near district Bahawalpur (Punjab), Pakistan |
2003-Oct |
PMID[20542692] |
NPO23218 |
Viscum coloratum |
Species |
Viscaceae |
Eukaryota |
n.a. |
aerial part |
n.a. |
PMID[2082684] |
NPO18212 |
Rhododendron ferrugineum |
Species |
Ericaceae |
Eukaryota |
n.a. |
leaf |
n.a. |
PMID[21443171] |
NPO23218 |
Viscum coloratum |
Species |
Viscaceae |
Eukaryota |
n.a. |
aerial part |
n.a. |
PMID[21922656] |
NPO21373 |
Vitex trifolia |
Species |
Lamiaceae |
Eukaryota |
fruits |
n.a. |
n.a. |
PMID[23327905] |
NPO18530 |
Shigella flexneri |
Species |
Enterobacteriaceae |
Bacteria |
n.a. |
n.a. |
n.a. |
PMID[26918643] |
NPO21373 |
Vitex trifolia |
Species |
Lamiaceae |
Eukaryota |
Leaves |
n.a. |
n.a. |
PMID[28453270] |
NPO23218 |
Viscum coloratum |
Species |
Viscaceae |
Eukaryota |
n.a. |
aerial part |
n.a. |
PMID[3254039] |
NPO23218 |
Viscum coloratum |
Species |
Viscaceae |
Eukaryota |
n.a. |
aerial part |
n.a. |
PMID[3256207] |
NPO17785 |
Avrainvillea nigricans |
Species |
Udoteaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[3668556] |
NPO23178 |
Jasminum grandiflorum |
Species |
Oleaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO22188 |
Piper aequale |
Species |
Piperaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO23218 |
Viscum coloratum |
Species |
Viscaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO23135 |
Formica fusca |
Species |
Formicidae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO21373 |
Vitex trifolia |
Species |
Lamiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO22819 |
Rodgersia podophylla |
Species |
Saxifragaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO19694 |
Senecio scandens |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO23178 |
Jasminum grandiflorum |
Species |
Oleaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO23135 |
Formica fusca |
Species |
Formicidae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO20954 |
Haloxylon salicornicum |
Species |
Chenopodiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO19694 |
Senecio scandens |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO21875 |
Persea indica |
Species |
Lauraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO22188 |
Piper aequale |
Species |
Piperaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO23218 |
Viscum coloratum |
Species |
Viscaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO22819 |
Rodgersia podophylla |
Species |
Saxifragaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO21373 |
Vitex trifolia |
Species |
Lamiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO21373 |
Vitex trifolia |
Species |
Lamiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCM_Taiwan] |
NPO23135 |
Formica fusca |
Species |
Formicidae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCM_Taiwan] |
NPO19694 |
Senecio scandens |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TM-MC] |
NPO21373 |
Vitex trifolia |
Species |
Lamiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TM-MC] |
NPO23218 |
Viscum coloratum |
Species |
Viscaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TM-MC] |
NPO21373 |
Vitex trifolia |
Species |
Lamiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO23135 |
Formica fusca |
Species |
Formicidae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO18571 |
Drypetes roxburghii |
Species |
Putranjivaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO20678 |
Grindelia nana |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO21298 |
Leucanthemum maximum |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO19074 |
Buddleja variabilis |
Species |
Scrophulariaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO20184 |
Streptomyces misawanensis |
Species |
Streptomycetaceae |
Bacteria |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO20808 |
Halopitys incurvus |
n.a. |
n.a. |
n.a. |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO16146 |
Osmundaria colensoi |
Species |
Rhodomelaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO21636 |
Didemnum inarmatum |
Species |
Didemnidae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO20536 |
Salvia nubicola |
Species |
Lamiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO21798 |
Dacrydium biforme |
Species |
Mytilidae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO21505 |
Calea megacephala |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO17108 |
Lecanora lividocinerea |
Species |
Lecanoraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO7865 |
Scapania nemorea |
Species |
Scapaniaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO21875 |
Persea indica |
Species |
Lauraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO22062 |
Leptothorax acervorum |
Species |
Formicidae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO22762 |
Eremophila serrulata |
Species |
Scrophulariaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO21736 |
Abies nobilis |
Species |
Pinaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO22582 |
Smenospongia echina |
Species |
Thorectidae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO22123 |
Disepalum plagioneurum |
Species |
Annonaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO14394 |
Hakea saligna |
Species |
Proteaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO22994 |
Cordyline indivisa |
Species |
Asparagaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO5952 |
Phegopteris bukoensis |
Species |
Thelypteridaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO22323 |
Pinus picea |
Species |
Pinaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO22710 |
Acrocomia sclerocarpa |
Species |
Arecaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO12225 |
Amsinckia menziesii |
Species |
Boraginaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO22248 |
Alkanna hirsutissima |
Species |
Boraginaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO23218 |
Viscum coloratum |
Species |
Viscaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO23057 |
Primula hirsuta |
Species |
Primulaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO19921 |
Polyphaga sinensis |
Species |
n.a. |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO21113 |
Coronophora gregaria |
Species |
Nitschkiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO14247 |
Melaleuca uncinata |
Species |
Myrtaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO17785 |
Avrainvillea nigricans |
Species |
Udoteaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO19694 |
Senecio scandens |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO22188 |
Piper aequale |
Species |
Piperaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO20954 |
Haloxylon salicornicum |
Species |
Chenopodiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO18212 |
Rhododendron ferrugineum |
Species |
Ericaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO7080 |
Monascus purpureus |
Species |
Aspergillaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO22819 |
Rodgersia podophylla |
Species |
Saxifragaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO21998 |
Corydalis cornuta |
Species |
Papaveraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO23178 |
Jasminum grandiflorum |
Species |
Oleaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO20360 |
Mentha pulegiformis |
Species |
Lamiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO20043 |
Vallaris solanacea |
Species |
Apocynaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO22940 |
Delphinium campylocentrum |
Species |
Ranunculaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO22454 |
Picris radicata |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO18530 |
Shigella flexneri |
Species |
Enterobacteriaceae |
Bacteria |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO21247 |
Nephroma australe |
Species |
Nephromataceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].
  NP Quantity Composition/Concentration
Organism ID |
NP ID |
Organism Material Preparation |
Organism Part |
NP Quantity (Standard) |
NP Quantity (Minimum) |
NP Quantity (Maximum) |
Quantity Unit |
Reference |
☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].
  Biological Activity
Target ID |
Target Type |
Target Name |
Target Organism |
Activity Type |
Activity Relation |
Value |
Unit |
Reference |
☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.
  Chemically structural similarity: I. Similar Active Natural Products in NPASS
Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)
Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient ![](images/questionmark.png)
●  The left chart: Distribution of similarity level between NPC17839 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).
range |
Tanimoto Coefficient |
0-0.1 | 183 |
0.1-0.2 | 1227 |
0.2-0.3 | 4563 |
0.3-0.4 | 13272 |
0.4-0.5 | 11696 |
0.5-0.6 | 7292 |
0.6-0.7 | 4014 |
0.7-0.8 | 428 |
0.8-0.85 | 17 |
0.85-0.9 | 2 |
0.9-0.95 | 1 |
0.95-1 | 2 |
Similarity Score |
Similarity Level |
Natural Product ID |
  Chemically structural similarity: II. Similar Clinical/Approved Drugs
Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.
●  The left chart: Distribution of similarity level between NPC17839 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).
range |
Tanimoto Coefficient |
0-0.1 | 154 |
0.1-0.2 | 1678 |
0.2-0.3 | 3721 |
0.3-0.4 | 2406 |
0.4-0.5 | 812 |
0.5-0.6 | 310 |
0.6-0.7 | 64 |
0.7-0.8 | 5 |
0.8-0.85 | 0 |
0.85-0.9 | 0 |
0.9-0.95 | 0 |
0.95-1 | 0 |
Similarity Score |
Similarity Level |
Drug ID |
Developmental Stage |