Structure

Physi-Chem Properties

Molecular Weight:  428.15
Volume:  415.448
LogP:  2.758
LogD:  2.948
LogS:  -4.283
# Rotatable Bonds:  5
TPSA:  81.68
# H-Bond Aceptor:  8
# H-Bond Donor:  0
# Rings:  5
# Heavy Atoms:  8

MedChem Properties

QED Drug-Likeness Score:  0.673
Synthetic Accessibility Score:  3.736
Fsp3:  0.435
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.825
MDCK Permeability:  3.280385863035917e-05
Pgp-inhibitor:  0.995
Pgp-substrate:  0.0
Human Intestinal Absorption (HIA):  0.002
20% Bioavailability (F20%):  0.002
30% Bioavailability (F30%):  0.051

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.044
Plasma Protein Binding (PPB):  94.76837158203125%
Volume Distribution (VD):  0.879
Pgp-substrate:  5.242123126983643%

ADMET: Metabolism

CYP1A2-inhibitor:  0.059
CYP1A2-substrate:  0.984
CYP2C19-inhibitor:  0.868
CYP2C19-substrate:  0.912
CYP2C9-inhibitor:  0.772
CYP2C9-substrate:  0.841
CYP2D6-inhibitor:  0.091
CYP2D6-substrate:  0.638
CYP3A4-inhibitor:  0.941
CYP3A4-substrate:  0.928

ADMET: Excretion

Clearance (CL):  8.362
Half-life (T1/2):  0.204

ADMET: Toxicity

hERG Blockers:  0.173
Human Hepatotoxicity (H-HT):  0.136
Drug-inuced Liver Injury (DILI):  0.692
AMES Toxicity:  0.057
Rat Oral Acute Toxicity:  0.091
Maximum Recommended Daily Dose:  0.907
Skin Sensitization:  0.206
Carcinogencity:  0.08
Eye Corrosion:  0.003
Eye Irritation:  0.071
Respiratory Toxicity:  0.776

Download Data

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General Info & Identifiers & Properties  
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Similar NPs/Drugs  

  Natural Product: NPC149505

Natural Product ID:  NPC149505
Common Name*:   Beta-Peltatin-A Methylether
IUPAC Name:   (5aR,8aR,9R)-4-methoxy-9-(3,4,5-trimethoxyphenyl)-5a,6,8a,9-tetrahydro-5H-[2]benzofuro[6,5-f][1,3]benzodioxol-8-one
Synonyms:   Beta-Peltatin A Methyl Ether; Beta-Peltatin-A Methylether
Standard InCHIKey:  BFKORKXLSJUYSS-RQUSPXKASA-N
Standard InCHI:  InChI=1S/C23H24O8/c1-25-15-6-11(7-16(26-2)21(15)28-4)18-13-8-17-22(31-10-30-17)20(27-3)14(13)5-12-9-29-23(24)19(12)18/h6-8,12,18-19H,5,9-10H2,1-4H3/t12-,18+,19-/m0/s1
SMILES:  COc1cc(cc(c1OC)OC)[C@@H]1c2cc3c(c(c2C[C@H]2COC(=O)[C@H]12)OC)OCO3
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL483004
PubChem CID:   159962
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0001392] Lignans, neolignans and related compounds
      • [CHEMONTID:0001510] Lignan lactones

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO17839 Machaerium mucronulatum Species Dolichopodidae Eukaryota n.a. n.a. n.a. DOI[10.1016/S0031-9422(00)94598-9]
NPO25454 Plumbago europaea Species Plumbaginaceae Eukaryota n.a. root n.a. DOI[10.2225/vol5-issue3-fulltext-4]
NPO21302 Cladosporium herbarum Species Cladosporiaceae Eukaryota n.a. n.a. n.a. PMID[11325242]
NPO7174 Callyspongia truncata Species Callyspongiidae Eukaryota n.a. n.a. n.a. PMID[12088440]
NPO7174 Callyspongia truncata Species Callyspongiidae Eukaryota n.a. n.a. n.a. PMID[12713420]
NPO7090 Ammi majus Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[15009205]
NPO21302 Cladosporium herbarum Species Cladosporiaceae Eukaryota n.a. n.a. n.a. PMID[16038560]
NPO23848 Podophyllum peltatum Species Berberidaceae Eukaryota n.a. n.a. n.a. PMID[16933860]
NPO1338 Arcangelisia gusanlung Species Menispermaceae Eukaryota n.a. stem n.a. PMID[21500777]
NPO9604 Amycolatopsis lurida Species Pseudonocardiaceae Bacteria n.a. n.a. n.a. PMID[25323720]
NPO16653 Matteuccia struthiopteris Species Onocleaceae Eukaryota rhizomes Liaoning province, China 2011-SEP PMID[25927664]
NPO16966 Leptospermum scoparium Species Myrtaceae Eukaryota n.a. n.a. n.a. PMID[26731565]
NPO8247 Austrobaileya scandens Species Austrobaileyaceae Eukaryota n.a. n.a. n.a. PMID[27214307]
NPO18983 Cleidion brevipetiolatum Species Euphorbiaceae Eukaryota n.a. n.a. n.a. PMID[31419126]
NPO23682 Juniperus phoenicea Species Cupressaceae Eukaryota n.a. n.a. n.a. PMID[6253598]
NPO23848 Podophyllum peltatum Species Berberidaceae Eukaryota n.a. root n.a. Database[Article]
NPO16653 Matteuccia struthiopteris Species Onocleaceae Eukaryota n.a. n.a. Database[FooDB]
NPO25454 Plumbago europaea Species Plumbaginaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18306 Juniperus thurifera Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13963 Laurencia elata Species Rhodomelaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23848 Podophyllum peltatum Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19127 Citrus tankan Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16653 Matteuccia struthiopteris Species Onocleaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7090 Ammi majus Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO3158 Linum album Species Linaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16293 Babylonia japonica Species Buccinidae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO17385 Magnolia acuminata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15358 Entandrophragma cylindricum Species Meliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17831 Millettia racemosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18306 Juniperus thurifera Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19127 Citrus tankan Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13963 Laurencia elata Species Rhodomelaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5764 Ophioglossum vulgatum Species Ophioglossaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16293 Babylonia japonica Species Buccinidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3158 Linum album Species Linaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17385 Magnolia acuminata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23848 Podophyllum peltatum Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23682 Juniperus phoenicea Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7090 Ammi majus Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16653 Matteuccia struthiopteris Species Onocleaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25454 Plumbago europaea Species Plumbaginaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23848 Podophyllum peltatum Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO19127 Citrus tankan Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO16653 Matteuccia struthiopteris Species Onocleaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO17385 Magnolia acuminata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO7090 Ammi majus Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO3158 Linum album Species Linaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO17068 Talaromyces wortmanni Species Trichocomaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13594 Hippocratea indica Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17596 Ficus maxima Species Moraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11603 Lathyrus macrorrhizus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5764 Ophioglossum vulgatum Species Ophioglossaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18377 Chaetomium retardatum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10712 Tabebuia rosea Species Bignoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7090 Ammi majus Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15358 Entandrophragma cylindricum Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21938 Coleus carnosus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16829 Dunaliella acidophila Species Dunaliellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12785 Bursera fagaroides Species Burseraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11677 Lactobacillus acidophilus Species Lactobacillaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO16293 Babylonia japonica Species Buccinidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17718 Artemisia schmidtiana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19057 Lentinellus omphalodes Species Auriscalpiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17839 Machaerium mucronulatum Species Dolichopodidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19189 Brickellia pendula Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12801 Aglaia meridionalis Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18575 Ochtodes crockeri Species Rhizophyllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18173 Pyrocystis lunula Species Pyrocystaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17831 Millettia racemosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18792 Crotalaria lechnaultii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3158 Linum album Species Linaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1338 Arcangelisia gusanlung Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3050 Cladonia pseudodidyma Species Cladoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25454 Plumbago europaea Species Plumbaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18983 Cleidion brevipetiolatum Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9535 Cortinarius basirubescens Species Cortinariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15608 Tanacetum santolina Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23848 Podophyllum peltatum Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18306 Juniperus thurifera Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21302 Cladosporium herbarum Species Cladosporiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18520 Helipterum strictum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17385 Magnolia acuminata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7807 Polyporus sulphureus Species Polyporaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17275 Chamaemelum scariosum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13963 Laurencia elata Species Rhodomelaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17709 Timonius kaniensis Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7174 Callyspongia truncata Species Callyspongiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16966 Leptospermum scoparium Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17802 Simmondsia chinensis Species Simmondsiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18061 Anacystis cyanea n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO8247 Austrobaileya scandens Species Austrobaileyaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16653 Matteuccia struthiopteris Species Onocleaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3746 Hesperocyparis nevadensis Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9604 Amycolatopsis lurida Species Pseudonocardiaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO12282 Parmelia conspersa Species Parmeliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18847 Copaifera paupera Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17190 Senecio erraticus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23682 Juniperus phoenicea Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18707 Allium ursinum Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19127 Citrus tankan Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18242 Gleichenia glauca Species Gleicheniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12072 Escallonia philippiana Species Escalloniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT91 Cell Line KB Homo sapiens ED50 = 0.026 ug ml-1 PMID[547016]
NPT190 Organism Human herpesvirus 1 Human herpesvirus 1 IC50 = 23.0 nM PMID[547015]
NPT195 Organism Vesicular stomatitis virus Vesicular stomatitis virus IC50 = 23.0 nM PMID[547015]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 16.0 nM PMID[547017]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC149505 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9792 High Similarity NPC13985
0.9792 High Similarity NPC210642
0.9789 High Similarity NPC104024
0.9789 High Similarity NPC65574
0.9789 High Similarity NPC304687
0.9789 High Similarity NPC80230
0.9789 High Similarity NPC101755
0.9726 High Similarity NPC273578
0.9653 High Similarity NPC262455
0.9653 High Similarity NPC177476
0.953 High Similarity NPC181168
0.953 High Similarity NPC115281
0.953 High Similarity NPC163527
0.953 High Similarity NPC19947
0.953 High Similarity NPC207584
0.9463 High Similarity NPC237946
0.9463 High Similarity NPC32373
0.9437 High Similarity NPC151423
0.9437 High Similarity NPC40237
0.9404 High Similarity NPC96593
0.9388 High Similarity NPC303519
0.9342 High Similarity NPC288149
0.9338 High Similarity NPC474043
0.9329 High Similarity NPC30009
0.9329 High Similarity NPC103197
0.9315 High Similarity NPC262804
0.9315 High Similarity NPC40654
0.9306 High Similarity NPC92693
0.9306 High Similarity NPC475000
0.9306 High Similarity NPC218841
0.9301 High Similarity NPC176586
0.9301 High Similarity NPC210354
0.9276 High Similarity NPC150943
0.9276 High Similarity NPC470637
0.9276 High Similarity NPC119910
0.9276 High Similarity NPC91634
0.9276 High Similarity NPC268718
0.9262 High Similarity NPC245948
0.9216 High Similarity NPC152424
0.9216 High Similarity NPC100465
0.92 High Similarity NPC178195
0.92 High Similarity NPC348849
0.9178 High Similarity NPC193779
0.9172 High Similarity NPC177644
0.9172 High Similarity NPC191158
0.9161 High Similarity NPC222531
0.9139 High Similarity NPC234730
0.9103 High Similarity NPC474288
0.9097 High Similarity NPC14294
0.9097 High Similarity NPC116759
0.9091 High Similarity NPC209411
0.9091 High Similarity NPC239890
0.9091 High Similarity NPC115624
0.9014 High Similarity NPC44245
0.9014 High Similarity NPC72796
0.8993 High Similarity NPC477695
0.8993 High Similarity NPC174512
0.8993 High Similarity NPC477698
0.8993 High Similarity NPC293757
0.8993 High Similarity NPC474965
0.8993 High Similarity NPC668
0.8981 High Similarity NPC474042
0.8981 High Similarity NPC174734
0.8981 High Similarity NPC306475
0.8968 High Similarity NPC191352
0.8968 High Similarity NPC258322
0.8966 High Similarity NPC218092
0.8966 High Similarity NPC246474
0.8966 High Similarity NPC162851
0.8954 High Similarity NPC239113
0.8954 High Similarity NPC115123
0.8954 High Similarity NPC473900
0.8951 High Similarity NPC11453
0.8933 High Similarity NPC24425
0.8924 High Similarity NPC185498
0.8919 High Similarity NPC321958
0.8919 High Similarity NPC321696
0.8919 High Similarity NPC87295
0.8912 High Similarity NPC18211
0.8912 High Similarity NPC143092
0.8889 High Similarity NPC196420
0.8882 High Similarity NPC178574
0.8882 High Similarity NPC65591
0.8881 High Similarity NPC211386
0.8874 High Similarity NPC477700
0.8874 High Similarity NPC164082
0.8868 High Similarity NPC117911
0.8867 High Similarity NPC145569
0.8867 High Similarity NPC85141
0.8867 High Similarity NPC216223
0.8851 High Similarity NPC474158
0.8851 High Similarity NPC327651
0.8851 High Similarity NPC318286
0.8844 High Similarity NPC218510
0.8844 High Similarity NPC76415
0.8816 High Similarity NPC56184
0.8816 High Similarity NPC477699
0.8816 High Similarity NPC104353
0.8812 High Similarity NPC179240
0.88 High Similarity NPC304821
0.879 High Similarity NPC61141
0.8784 High Similarity NPC326144
0.8782 High Similarity NPC78944
0.8774 High Similarity NPC19600
0.8766 High Similarity NPC188962
0.8766 High Similarity NPC42871
0.8766 High Similarity NPC202249
0.8758 High Similarity NPC474514
0.875 High Similarity NPC474975
0.875 High Similarity NPC32079
0.8741 High Similarity NPC205915
0.8726 High Similarity NPC319749
0.8718 High Similarity NPC125713
0.8718 High Similarity NPC325122
0.871 High Similarity NPC477380
0.8701 High Similarity NPC136757
0.869 High Similarity NPC143895
0.8688 High Similarity NPC79322
0.8684 High Similarity NPC473989
0.8684 High Similarity NPC316989
0.8675 High Similarity NPC198129
0.8675 High Similarity NPC327352
0.8675 High Similarity NPC477375
0.8675 High Similarity NPC252281
0.8671 High Similarity NPC280778
0.8671 High Similarity NPC22130
0.8671 High Similarity NPC116838
0.8662 High Similarity NPC474770
0.8658 High Similarity NPC474036
0.8654 High Similarity NPC477885
0.8649 High Similarity NPC287124
0.8645 High Similarity NPC238834
0.8639 High Similarity NPC216434
0.8639 High Similarity NPC103448
0.8636 High Similarity NPC477377
0.8625 High Similarity NPC471923
0.8618 High Similarity NPC322426
0.8618 High Similarity NPC477376
0.8618 High Similarity NPC477374
0.8608 High Similarity NPC15212
0.8601 High Similarity NPC192255
0.8598 High Similarity NPC196771
0.8591 High Similarity NPC470811
0.8591 High Similarity NPC477696
0.8591 High Similarity NPC477697
0.859 High Similarity NPC301897
0.8581 High Similarity NPC312763
0.8581 High Similarity NPC54179
0.8581 High Similarity NPC198461
0.8571 High Similarity NPC473531
0.8571 High Similarity NPC477378
0.8571 High Similarity NPC475453
0.8571 High Similarity NPC475229
0.8562 High Similarity NPC209229
0.8562 High Similarity NPC32189
0.8562 High Similarity NPC477884
0.8553 High Similarity NPC316676
0.8553 High Similarity NPC325720
0.8552 High Similarity NPC110958
0.8552 High Similarity NPC19890
0.8543 High Similarity NPC33832
0.8542 High Similarity NPC65183
0.8542 High Similarity NPC261812
0.8542 High Similarity NPC72046
0.8533 High Similarity NPC166884
0.8533 High Similarity NPC141569
0.8533 High Similarity NPC477701
0.8523 High Similarity NPC474295
0.8523 High Similarity NPC191231
0.8516 High Similarity NPC474606
0.8509 High Similarity NPC320471
0.8509 High Similarity NPC83049
0.8509 High Similarity NPC118162
0.8506 High Similarity NPC475756
0.8497 Intermediate Similarity NPC127827
0.8497 Intermediate Similarity NPC125570
0.8493 Intermediate Similarity NPC25333
0.8493 Intermediate Similarity NPC148893
0.8493 Intermediate Similarity NPC49235
0.8487 Intermediate Similarity NPC116019
0.8483 Intermediate Similarity NPC266848
0.8483 Intermediate Similarity NPC136750
0.8477 Intermediate Similarity NPC477702
0.8476 Intermediate Similarity NPC474568
0.8471 Intermediate Similarity NPC29727
0.8467 Intermediate Similarity NPC106920
0.8467 Intermediate Similarity NPC273657
0.8462 Intermediate Similarity NPC473425
0.8457 Intermediate Similarity NPC311912
0.8456 Intermediate Similarity NPC312199
0.8452 Intermediate Similarity NPC471154
0.8452 Intermediate Similarity NPC220577
0.8442 Intermediate Similarity NPC475722
0.8438 Intermediate Similarity NPC198796
0.8435 Intermediate Similarity NPC121651
0.8425 Intermediate Similarity NPC31530
0.8425 Intermediate Similarity NPC145722
0.8425 Intermediate Similarity NPC256776
0.8425 Intermediate Similarity NPC185680
0.8421 Intermediate Similarity NPC212890

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC149505 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9463 High Similarity NPD4967 Phase 2
0.9463 High Similarity NPD4965 Approved
0.9463 High Similarity NPD4966 Approved
0.9338 High Similarity NPD6234 Discontinued
0.9262 High Similarity NPD37 Approved
0.8924 High Similarity NPD7228 Approved
0.8846 High Similarity NPD7199 Phase 2
0.8734 High Similarity NPD7184 Clinical (unspecified phase)
0.8704 High Similarity NPD7240 Approved
0.8431 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.8323 Intermediate Similarity NPD7090 Clinical (unspecified phase)
0.8117 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7988 Intermediate Similarity NPD6232 Discontinued
0.7966 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7952 Intermediate Similarity NPD7473 Discontinued
0.7902 Intermediate Similarity NPD3705 Approved
0.7849 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.779 Intermediate Similarity NPD7680 Approved
0.7758 Intermediate Similarity NPD5494 Approved
0.7751 Intermediate Similarity NPD5844 Phase 1
0.7692 Intermediate Similarity NPD3818 Discontinued
0.7683 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7665 Intermediate Similarity NPD7229 Phase 3
0.7662 Intermediate Similarity NPD2438 Suspended
0.7622 Intermediate Similarity NPD3817 Phase 2
0.7561 Intermediate Similarity NPD7819 Suspended
0.755 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7516 Intermediate Similarity NPD6674 Discontinued
0.75 Intermediate Similarity NPD2532 Approved
0.75 Intermediate Similarity NPD2534 Approved
0.75 Intermediate Similarity NPD2533 Approved
0.7485 Intermediate Similarity NPD7028 Phase 2
0.7484 Intermediate Similarity NPD3748 Approved
0.7455 Intermediate Similarity NPD1465 Phase 2
0.7451 Intermediate Similarity NPD2979 Phase 3
0.7446 Intermediate Similarity NPD5005 Approved
0.7446 Intermediate Similarity NPD5006 Approved
0.7421 Intermediate Similarity NPD5084 Clinical (unspecified phase)
0.7415 Intermediate Similarity NPD1281 Approved
0.7414 Intermediate Similarity NPD6559 Discontinued
0.7399 Intermediate Similarity NPD7074 Phase 3
0.7396 Intermediate Similarity NPD8127 Discontinued
0.7386 Intermediate Similarity NPD8032 Phase 2
0.7381 Intermediate Similarity NPD919 Approved
0.7371 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7368 Intermediate Similarity NPD7827 Phase 1
0.7365 Intermediate Similarity NPD3882 Suspended
0.7358 Intermediate Similarity NPD4109 Clinical (unspecified phase)
0.7358 Intermediate Similarity NPD4110 Phase 3
0.7358 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7351 Intermediate Similarity NPD3018 Phase 2
0.7349 Intermediate Similarity NPD8455 Phase 2
0.7342 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.7341 Intermediate Similarity NPD7054 Approved
0.7322 Intermediate Similarity NPD4420 Approved
0.7318 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.731 Intermediate Similarity NPD3926 Phase 2
0.7299 Intermediate Similarity NPD7472 Approved
0.729 Intermediate Similarity NPD6355 Discontinued
0.729 Intermediate Similarity NPD1933 Approved
0.7289 Intermediate Similarity NPD1934 Approved
0.7284 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD5283 Phase 1
0.7267 Intermediate Similarity NPD1283 Approved
0.7256 Intermediate Similarity NPD1653 Approved
0.7255 Intermediate Similarity NPD3027 Phase 3
0.7251 Intermediate Similarity NPD3787 Discontinued
0.725 Intermediate Similarity NPD3750 Approved
0.7248 Intermediate Similarity NPD2981 Phase 2
0.7246 Intermediate Similarity NPD2801 Approved
0.7246 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.7239 Intermediate Similarity NPD1940 Clinical (unspecified phase)
0.7226 Intermediate Similarity NPD4060 Phase 1
0.7215 Intermediate Similarity NPD2531 Phase 2
0.7215 Intermediate Similarity NPD6099 Approved
0.7215 Intermediate Similarity NPD6100 Approved
0.7212 Intermediate Similarity NPD7458 Discontinued
0.7211 Intermediate Similarity NPD1651 Approved
0.7211 Intermediate Similarity NPD5691 Approved
0.7209 Intermediate Similarity NPD5242 Approved
0.7208 Intermediate Similarity NPD6798 Discontinued
0.7208 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.72 Intermediate Similarity NPD2983 Phase 2
0.72 Intermediate Similarity NPD2982 Phase 2
0.719 Intermediate Similarity NPD4908 Phase 1
0.7175 Intermediate Similarity NPD7808 Phase 3
0.7169 Intermediate Similarity NPD6599 Discontinued
0.7168 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7168 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7168 Intermediate Similarity NPD6166 Phase 2
0.7162 Intermediate Similarity NPD17 Approved
0.7159 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7159 Intermediate Similarity NPD6797 Phase 2
0.7143 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7135 Intermediate Similarity NPD8312 Approved
0.7135 Intermediate Similarity NPD8313 Approved
0.7126 Intermediate Similarity NPD7411 Suspended
0.7126 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7124 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7119 Intermediate Similarity NPD7685 Pre-registration
0.7119 Intermediate Similarity NPD7251 Discontinued
0.7118 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.7118 Intermediate Similarity NPD7075 Discontinued
0.7117 Intermediate Similarity NPD6799 Approved
0.7115 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7115 Intermediate Similarity NPD1613 Approved
0.7107 Intermediate Similarity NPD2796 Approved
0.7101 Intermediate Similarity NPD5353 Approved
0.7093 Intermediate Similarity NPD1247 Approved
0.7093 Intermediate Similarity NPD6959 Discontinued
0.7089 Intermediate Similarity NPD7097 Phase 1
0.7083 Intermediate Similarity NPD6801 Discontinued
0.7078 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.707 Intermediate Similarity NPD3657 Discovery
0.7063 Intermediate Similarity NPD5762 Approved
0.7063 Intermediate Similarity NPD5763 Approved
0.7059 Intermediate Similarity NPD7768 Phase 2
0.7049 Intermediate Similarity NPD7296 Approved
0.7032 Intermediate Similarity NPD4625 Phase 3
0.703 Intermediate Similarity NPD6273 Approved
0.702 Intermediate Similarity NPD1608 Approved
0.7018 Intermediate Similarity NPD3749 Approved
0.7006 Intermediate Similarity NPD4140 Approved
0.7006 Intermediate Similarity NPD3226 Approved
0.7006 Intermediate Similarity NPD3619 Clinical (unspecified phase)
0.7006 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7006 Intermediate Similarity NPD3620 Phase 2
0.7 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD5402 Approved
0.6994 Remote Similarity NPD6190 Approved
0.6993 Remote Similarity NPD3267 Approved
0.6993 Remote Similarity NPD3266 Approved
0.6993 Remote Similarity NPD2797 Approved
0.6989 Remote Similarity NPD3751 Discontinued
0.6988 Remote Similarity NPD920 Approved
0.6987 Remote Similarity NPD3764 Approved
0.6987 Remote Similarity NPD1699 Clinical (unspecified phase)
0.6975 Remote Similarity NPD1243 Approved
0.6975 Remote Similarity NPD7421 Clinical (unspecified phase)
0.6971 Remote Similarity NPD4481 Phase 3
0.6964 Remote Similarity NPD4380 Phase 2
0.6962 Remote Similarity NPD230 Phase 1
0.6959 Remote Similarity NPD5536 Phase 2
0.6957 Remote Similarity NPD6003 Clinical (unspecified phase)
0.6957 Remote Similarity NPD6006 Clinical (unspecified phase)
0.6957 Remote Similarity NPD7266 Discontinued
0.6957 Remote Similarity NPD6005 Phase 3
0.6957 Remote Similarity NPD6004 Phase 3
0.6957 Remote Similarity NPD6002 Phase 3
0.6954 Remote Similarity NPD1610 Phase 2
0.6954 Remote Similarity NPD5711 Approved
0.6954 Remote Similarity NPD5710 Approved
0.6949 Remote Similarity NPD7804 Clinical (unspecified phase)
0.6948 Remote Similarity NPD6917 Clinical (unspecified phase)
0.6943 Remote Similarity NPD6663 Approved
0.6943 Remote Similarity NPD8151 Discontinued
0.6943 Remote Similarity NPD6233 Phase 2
0.6936 Remote Similarity NPD6746 Phase 2
0.6933 Remote Similarity NPD1878 Clinical (unspecified phase)
0.6933 Remote Similarity NPD8166 Discontinued
0.6933 Remote Similarity NPD4626 Approved
0.6933 Remote Similarity NPD4628 Phase 3
0.6933 Remote Similarity NPD7003 Approved
0.6923 Remote Similarity NPD6386 Approved
0.6923 Remote Similarity NPD7095 Approved
0.6923 Remote Similarity NPD6385 Approved
0.6909 Remote Similarity NPD1511 Approved
0.6894 Remote Similarity NPD4476 Approved
0.6894 Remote Similarity NPD4477 Approved
0.6894 Remote Similarity NPD3539 Phase 1
0.6894 Remote Similarity NPD2935 Discontinued
0.689 Remote Similarity NPD5307 Clinical (unspecified phase)
0.6886 Remote Similarity NPD5403 Approved
0.6879 Remote Similarity NPD1296 Phase 2
0.6879 Remote Similarity NPD3268 Approved
0.6879 Remote Similarity NPD6410 Clinical (unspecified phase)
0.6875 Remote Similarity NPD7852 Clinical (unspecified phase)
0.6867 Remote Similarity NPD5401 Approved
0.6867 Remote Similarity NPD642 Clinical (unspecified phase)
0.6867 Remote Similarity NPD5585 Approved
0.6867 Remote Similarity NPD4378 Clinical (unspecified phase)
0.6863 Remote Similarity NPD5327 Phase 3
0.6863 Remote Similarity NPD4749 Approved
0.6859 Remote Similarity NPD6832 Phase 2
0.6852 Remote Similarity NPD2346 Discontinued
0.6852 Remote Similarity NPD3540 Phase 1
0.6851 Remote Similarity NPD2971 Approved
0.6851 Remote Similarity NPD2968 Approved
0.6849 Remote Similarity NPD5535 Approved
0.6848 Remote Similarity NPD7235 Clinical (unspecified phase)
0.6848 Remote Similarity NPD643 Clinical (unspecified phase)
0.6842 Remote Similarity NPD1611 Approved
0.6842 Remote Similarity NPD5563 Clinical (unspecified phase)
0.6832 Remote Similarity NPD1510 Phase 2
0.6832 Remote Similarity NPD7033 Discontinued
0.6832 Remote Similarity NPD2799 Discontinued
0.6832 Remote Similarity NPD4108 Discontinued
0.6826 Remote Similarity NPD1512 Approved
0.6821 Remote Similarity NPD7975 Clinical (unspecified phase)

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data