NPASS Compound

Natural Product: NPC130591

Natural Product ID	NPC130591
Common Name ? The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.	6-Epi-Clusianone
IUPAC Name	n.a.
Synonyms	(+)-Clusianone; (-)-Clusianone; 6-Epi-Clusianone
Synthetic Gene Cluster	n.a.
ChEMBL Identifier	CHEMBL1629877
PubChem CID	NA
Chemical Classification	CHEMONTID:0000000 [Organic compounds] [CHEMONTID:0000012] Lipids and lipid-like molecules [CHEMONTID:0000259] Prenol lipids [CHEMONTID:0001549] Monoterpenoids [CHEMONTID:0001564] Bicyclic monoterpenoids

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

Chemical Representations

RDKit 3D 79 81 0 0 0 0 0 0 0 0999 V2000 -2.4228 4.1968 2.1402 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.1350 4.3944 1.4121 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.2473 3.4579 1.1920 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.3618 2.0534 1.6205 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.3213 1.0487 0.5066 C 0 0 1 0 0 0 0 0 0 0 0 0 0.9871 1.1135 -0.2908 C 0 0 0 0 0 0 0 0 0 0 0 0 1.8946 -0.0424 0.0696 C 0 0 2 0 0 0 0 0 0 0 0 0 3.2144 0.2550 -0.5521 C 0 0 0 0 0 0 0 0 0 0 0 0 4.3047 -0.6853 -0.3380 C 0 0 0 0 0 0 0 0 0 0 0 0 5.4249 -0.3415 0.2796 C 0 0 0 0 0 0 0 0 0 0 0 0 6.5238 -1.3064 0.4902 C 0 0 0 0 0 0 0 0 0 0 0 0 5.5673 1.0499 0.7672 C 0 0 0 0 0 0 0 0 0 0 0 0 1.2958 -1.3993 -0.2555 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.1840 -1.3883 -0.0987 C 0 0 1 0 0 0 0 0 0 0 0 0 -0.4289 -0.3375 0.9679 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.6835 -0.6627 2.0710 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.9808 -0.9519 -1.2940 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.9830 -1.4994 -2.3975 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.8685 0.2577 -1.1545 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.3644 1.2900 -0.5276 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.7418 2.5997 -0.7834 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.2229 0.2055 -1.6343 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.5628 -0.8033 -2.3949 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.2502 1.1719 -1.3489 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.3549 1.2296 -2.2284 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.4394 2.0303 -2.0058 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.5126 2.8373 -0.8916 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.4630 2.8057 -0.0185 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.3626 1.9849 -0.2535 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.8205 -2.6918 0.3439 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.5967 -3.8306 -0.5460 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.1126 -5.0174 -0.2360 C 0 0 0 0 0 0 0 0 0 0 0 0 0.3050 -5.4236 1.1271 C 0 0 0 0 0 0 0 0 0 0 0 0 0.0567 -6.0851 -1.2938 C 0 0 0 0 0 0 0 0 0 0 0 0 1.7934 -1.9920 -1.5254 C 0 0 0 0 0 0 0 0 0 0 0 0 1.8649 -2.3111 0.8622 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.8960 5.7932 0.9189 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.6414 5.1268 2.7427 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.2622 4.1360 1.4194 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.4156 3.3824 2.8606 H 0 0 0 0 0 0 0 0 0 0 0 0 0.6551 3.7366 0.6476 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.2847 1.8374 2.1970 H 0 0 0 0 0 0 0 0 0 0 0 0 0.4741 1.7647 2.3188 H 0 0 0 0 0 0 0 0 0 0 0 0 1.5128 2.0239 0.0522 H 0 0 0 0 0 0 0 0 0 0 0 0 0.8332 1.2018 -1.3741 H 0 0 0 0 0 0 0 0 0 0 0 0 2.0383 0.0598 1.1875 H 0 0 0 0 0 0 0 0 0 0 0 0 3.1085 0.5520 -1.6403 H 0 0 0 0 0 0 0 0 0 0 0 0 3.5392 1.2432 -0.0895 H 0 0 0 0 0 0 0 0 0 0 0 0 4.2462 -1.6994 -0.6822 H 0 0 0 0 0 0 0 0 0 0 0 0 6.1792 -2.3489 0.6013 H 0 0 0 0 0 0 0 0 0 0 0 0 7.2806 -1.2704 -0.3317 H 0 0 0 0 0 0 0 0 0 0 0 0 7.1035 -1.0635 1.4256 H 0 0 0 0 0 0 0 0 0 0 0 0 6.5399 1.2318 1.2638 H 0 0 0 0 0 0 0 0 0 0 0 0 4.7890 1.3263 1.5199 H 0 0 0 0 0 0 0 0 0 0 0 0 5.4979 1.8061 -0.0481 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.7335 2.9442 -1.7432 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.3434 0.6128 -3.1181 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.2839 2.0716 -2.6822 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.3902 3.4718 -0.7337 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.4658 3.4096 0.8640 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.5784 1.9376 0.5172 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.9526 -2.5070 0.4217 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.5291 -2.8901 1.3788 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.8785 -3.6689 -1.6094 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.1339 -6.4577 1.2759 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.0376 -4.7386 1.9201 H 0 0 0 0 0 0 0 0 0 0 0 0 1.4248 -5.5158 1.1156 H 0 0 0 0 0 0 0 0 0 0 0 0 1.0629 -6.5477 -1.1633 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.7382 -6.8569 -1.2024 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.0214 -5.6018 -2.2915 H 0 0 0 0 0 0 0 0 0 0 0 0 2.4187 -2.9283 -1.3657 H 0 0 0 0 0 0 0 0 0 0 0 0 2.4273 -1.3192 -2.1359 H 0 0 0 0 0 0 0 0 0 0 0 0 1.0036 -2.3522 -2.2111 H 0 0 0 0 0 0 0 0 0 0 0 0 2.0885 -3.3085 0.4934 H 0 0 0 0 0 0 0 0 0 0 0 0 1.2556 -2.3469 1.7492 H 0 0 0 0 0 0 0 0 0 0 0 0 2.8594 -1.8872 1.2248 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.2452 6.4932 1.7316 H 0 0 0 0 0 0 0 0 0 0 0 0 0.1883 5.9022 0.7647 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.5064 6.0314 0.0287 H 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 2 3 3 4 1 0 5 4 1 1 5 6 1 0 6 7 1 0 7 8 1 0 8 9 1 0 9 10 2 3 10 11 1 0 10 12 1 0 7 13 1 0 13 14 1 0 14 15 1 0 15 16 2 0 14 17 1 0 17 18 2 0 17 19 1 0 19 20 2 0 20 21 1 0 19 22 1 0 22 23 2 0 22 24 1 0 24 25 2 0 25 26 1 0 26 27 2 0 27 28 1 0 28 29 2 0 14 30 1 1 30 31 1 0 31 32 2 3 32 33 1 0 32 34 1 0 13 35 1 0 13 36 1 0 2 37 1 0 20 5 1 0 29 24 1 0 15 5 1 0 1 38 1 0 1 39 1 0 1 40 1 0 3 41 1 0 4 42 1 0 4 43 1 0 6 44 1 0 6 45 1 0 7 46 1 1 8 47 1 0 8 48 1 0 9 49 1 0 11 50 1 0 11 51 1 0 11 52 1 0 12 53 1 0 12 54 1 0 12 55 1 0 21 56 1 0 25 57 1 0 26 58 1 0 27 59 1 0 28 60 1 0 29 61 1 0 30 62 1 0 30 63 1 0 31 64 1 0 33 65 1 0 33 66 1 0 33 67 1 0 34 68 1 0 34 69 1 0 34 70 1 0 35 71 1 0 35 72 1 0 35 73 1 0 36 74 1 0 36 75 1 0 36 76 1 0 37 77 1 0 37 78 1 0 37 79 1 0 M END

Standard InCHIKey	JXKKYQPCNJMAHZ-DZMJNENTSA-N
Standard InCHI	InChI=1S/C33H42O4/c1-21(2)14-15-25-20-32(18-16-22(3)4)28(35)26(27(34)24-12-10-9-11-13-24)29(36)33(30(32)37,31(25,7)8)19-17-23(5)6/h9-14,16-17,25,35H,15,18-20H2,1-8H3/t25-,32-,33+/m0/s1
SMILES	CC(=CC[C@]12C[C@H](CC=C(C)C)C([C@@](C2=O)(C(=O)C(=C1O)C(=O)c1ccccc1)CC=C(C)C)(C)C)C

Calculated Properties

Physi-Chem Properties

Molecular Weight:	502.31	Volume:	562.451 ? Van der Waals volume.
Dense:	0.893	LogP:	6.842 ? The logarithm of the n-octanol/water distribution coefficients.
logD7.4:	5.038 ? The logarithm of the n-octanol/water distribution coefficient at pH=7.4.	LogS:	-6.277 ? The logarithm of aqueous solubility value.
Rotatable Bonds:	8.0	Rigid Bonds:	22.0
TPSA:	71.44 ? Topological Polar Surface Area.	H-Bond Acceptor:	4.0
H-Bond Donor:	1.0	Rings:	3.0
Heavy Atoms:	4.0

MedChem Properties

QED Drug-Likeness Score:	0.17	GASA:	1.0 ? GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:	5.052	Fsp³:	0.485
MCE-18:	89.714 ? MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.	Lipinski Rule-of-5:	Accepted
Pfizer Rule:	Accepted	GSK Rule:	Accepted
Golden Triangle Rule:	Accepted	BMS Rule:	0
Chelating Alert:	1	PAINS Alert:	0
Colloidal aggregators:	0.938	Fluc inhibitor:	0.079 ? The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:	0.181 ? The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1	Green fluorescence:	0.49 ? The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:	0.608	Promiscuous compounds:	0.051

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:	-4.667	MDCK Permeability:	-4.676
Pgp-inhibitor:	0.05	Pgp-substrate:	0.028
PAMPA:	0.968 ? The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).	Human Intestinal Absorption (HIA):	0.0
20% Bioavailability (F20%):	0.0	30% Bioavailability (F30%):	0.0
50% Bioavailability (F50%):	0.137

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):	0.609	MRP1:	0.677
Plasma Protein Binding (PPB):	88.619%	Volume Distribution (VD):	0.135
Fu:	12.851% ? The fraction unbound in plasms.	OATP1B1 inhibitor:	0.983
OATP1B3 inhibitor:	0.172	BCRP inhibitor:	0.001
BSEP inhibitor:	0.037

ADMET: Metabolism

CYP1A2-inhibitor:	0.0	CYP1A2-substrate:	0.998
CYP2C19-inhibitor:	1.0	CYP2C19-substrate:	0.899
CYP2C9-inhibitor:	0.002	CYP2C9-substrate:	0.49
CYP2D6-inhibitor:	0.0	CYP2D6-substrate:	0.97
CYP3A4-inhibitor:	0.996	CYP3A4-substrate:	0.999
CYP2B6-substrate:	0.0	CYP2C8-inhibitor:	0.997
HLM stability:	1.0 ? Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):

3.373

Half-life (T1/2):

1.239

ADMET: Toxicity

hERG Blockers:	0.027	hERG Blockers (10um):	0.154
Human Hepatotoxicity (H-HT):	0.756	Drug-induced Liver Injury (DILI):	0.62
AMES Toxicity:	0.418	Rat Oral Acute Toxicity:	0.837
Maximum Recommended Daily Dose:	0.205	Skin Sensitization:	0.955
Carcinogencity:	0.613	Eye Corrosion:	0.0
Eye Irritation:	0.044	Respiratory Toxicity:	0.824
Drug-induced Neurotoxicity:	0.218	Ototoxicity:	0.669
Hematotoxicity:	0.67	Drug-induced Nephrotoxicity:	0.989
Genotoxicity:	0.98	RPMI-8226 Immunitoxicity:	0.055
A549 Cytotoxicity:	0.188	Hek293 Cytotoxicity:	0.149
BCF:	1.933 ? Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].	IGC50:	5.388 ? 48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:	7.793 ? 48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].	LC50FM:	7.728 ? 96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

Species Source

Organism ID	Organism Name	Taxonomy Level	Family	SuperKingdom	Isolation Part	Collection Location	Collection Time	Reference
NPO30436	Rheedia edulis	Species	Clusiaceae	Eukaryota	n.a.	seed	n.a.	PMID[21028890]
NPO30436	Rheedia edulis	Species	Clusiaceae	Eukaryota	n.a.	exocarp	n.a.	PMID[21028890]
NPO30436	Rheedia edulis	Species	Clusiaceae	Eukaryota	seeds and rinds	n.a.	n.a.	PMID[21028890]
NPO4768	Lunaria annua	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[39202882]
NPO6556	Garcinia intermedia	Species	Clusiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO4768	Lunaria annua	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO3858	Pimpinella magna	Species	Apiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO6556	Garcinia intermedia	Species	Clusiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO104	Hymenodictyon floribundum	Species	Rubiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO4768	Lunaria annua	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO3858	Pimpinella magna	Species	Apiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO10493	Casearia thwaitesii	Species	Salicaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO1970	Rubus palmatus	Species	Rosaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

NP Quantity Composition/Concentration

Organism ID	Organism Name	Organism Material Preparation	Organism Part	NP Quantity (Standard)	NP Quantity (Minimum)	NP Quantity (Maximum)	Quantity Unit	Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

Biological Activity

Activity Type	# Activity
IC50	10
EC50	1
GI50	56

Activity Type	# Activity
Cell line	62
Others	1
Organism	3
Non-molecular	1

Molecular-level activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

In vitro activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference
NPT368	Cell line	SN12C	Homo sapiens	GI50	n.a.	3491.4	nM	PubChem BioAssay data set
NPT367	Cell line	MDA-N	Homo sapiens	GI50	n.a.	5211.95	nM	PubChem BioAssay data set
NPT370	Cell line	NCI-H23	Homo sapiens	GI50	n.a.	7673.61	nM	PubChem BioAssay data set
NPT369	Cell line	ACHN	Homo sapiens	GI50	n.a.	4875.28	nM	PubChem BioAssay data set
NPT371	Cell line	UO-31	Homo sapiens	GI50	n.a.	3443.5	nM	PubChem BioAssay data set
NPT372	Cell line	HOP-92	Homo sapiens	GI50	n.a.	4305.27	nM	PubChem BioAssay data set
NPT373	Cell line	SK-MEL-5	Homo sapiens	GI50	n.a.	4528.98	nM	PubChem BioAssay data set
NPT374	Cell line	SF-539	Homo sapiens	GI50	n.a.	11561.12	nM	PubChem BioAssay data set
NPT375	Cell line	Malme-3M	Homo sapiens	GI50	n.a.	6486.34	nM	PubChem BioAssay data set
NPT376	Cell line	A498	Homo sapiens	GI50	n.a.	9462.37	nM	PubChem BioAssay data set
NPT111	Cell line	K562	Homo sapiens	GI50	n.a.	3872.58	nM	PubChem BioAssay data set
NPT112	Cell line	MOLT-4	Homo sapiens	GI50	n.a.	4560.37	nM	PubChem BioAssay data set
NPT378	Cell line	NCI/ADR-RES	Homo sapiens	GI50	n.a.	5333.35	nM	PubChem BioAssay data set
NPT379	Cell line	HOP-62	Homo sapiens	GI50	n.a.	6870.68	nM	PubChem BioAssay data set
NPT380	Cell line	U-251	Homo sapiens	GI50	n.a.	4305.27	nM	PubChem BioAssay data set
NPT381	Cell line	OVCAR-8	Homo sapiens	GI50	n.a.	5780.96	nM	PubChem BioAssay data set
NPT382	Cell line	OVCAR-5	Homo sapiens	GI50	n.a.	4977.37	nM	PubChem BioAssay data set
NPT82	Cell line	MDA-MB-231	Homo sapiens	GI50	n.a.	6011.74	nM	PubChem BioAssay data set
NPT383	Cell line	SNB-19	Homo sapiens	GI50	n.a.	5211.95	nM	PubChem BioAssay data set
NPT384	Cell line	TK-10	Homo sapiens	GI50	n.a.	5152.29	nM	PubChem BioAssay data set
NPT385	Cell line	SR	Homo sapiens	GI50	n.a.	8649.68	nM	PubChem BioAssay data set
NPT323	Cell line	SW-620	Homo sapiens	GI50	n.a.	6280.58	nM	PubChem BioAssay data set
NPT386	Cell line	KM12	Homo sapiens	GI50	n.a.	3881.5	nM	PubChem BioAssay data set
NPT455	Cell line	NCI-H522	Homo sapiens	GI50	n.a.	5382.7	nM	PubChem BioAssay data set
NPT387	Cell line	M14	Homo sapiens	GI50	n.a.	6652.73	nM	PubChem BioAssay data set
NPT388	Cell line	NCI-H322M	Homo sapiens	GI50	n.a.	5984.12	nM	PubChem BioAssay data set
NPT389	Cell line	RPMI-8226	Homo sapiens	GI50	n.a.	3365.12	nM	PubChem BioAssay data set
NPT390	Cell line	LOX IMVI	Homo sapiens	GI50	n.a.	3459.39	nM	PubChem BioAssay data set
NPT456	Cell line	OVCAR-4	Homo sapiens	GI50	n.a.	5152.29	nM	PubChem BioAssay data set
NPT457	Cell line	BT-549	Homo sapiens	GI50	n.a.	8933.05	nM	PubChem BioAssay data set
NPT147	Cell line	SK-MEL-2	Homo sapiens	GI50	n.a.	2666.86	nM	PubChem BioAssay data set
NPT391	Cell line	HCC 2998	Homo sapiens	GI50	n.a.	3845.92	nM	PubChem BioAssay data set
NPT81	Cell line	A549	Homo sapiens	GI50	n.a.	4943.11	nM	PubChem BioAssay data set
NPT392	Cell line	SNB-75	Homo sapiens	GI50	n.a.	7277.8	nM	PubChem BioAssay data set
NPT148	Cell line	HCT-15	Homo sapiens	GI50	n.a.	5035.01	nM	PubChem BioAssay data set
NPT393	Cell line	HCT-116	Homo sapiens	GI50	n.a.	3630.78	nM	PubChem BioAssay data set
NPT394	Cell line	EKVX	Homo sapiens	GI50	n.a.	5046.61	nM	PubChem BioAssay data set
NPT395	Cell line	SF-268	Homo sapiens	GI50	n.a.	10185.91	nM	PubChem BioAssay data set
NPT306	Cell line	PC-3	Homo sapiens	GI50	n.a.	4775.29	nM	PubChem BioAssay data set
NPT83	Cell line	MCF7	Homo sapiens	GI50	n.a.	4591.98	nM	PubChem BioAssay data set
NPT146	Cell line	SK-OV-3	Homo sapiens	GI50	n.a.	5321.08	nM	PubChem BioAssay data set
NPT396	Cell line	T47D	Homo sapiens	GI50	n.a.	5199.96	nM	PubChem BioAssay data set
NPT397	Cell line	NCI-H460	Homo sapiens	GI50	n.a.	3296.1	nM	PubChem BioAssay data set
NPT308	Cell line	CAKI-1	Homo sapiens	GI50	n.a.	4436.09	nM	PubChem BioAssay data set
NPT398	Cell line	UACC-62	Homo sapiens	GI50	n.a.	3443.5	nM	PubChem BioAssay data set
NPT400	Cell line	MDA-MB-435	Homo sapiens	GI50	n.a.	5395.11	nM	PubChem BioAssay data set
NPT399	Cell line	SF-295	Homo sapiens	GI50	n.a.	4265.8	nM	PubChem BioAssay data set
NPT458	Cell line	IGROV-1	Homo sapiens	GI50	n.a.	3819.44	nM	PubChem BioAssay data set
NPT401	Cell line	786-0	Homo sapiens	GI50	n.a.	5508.08	nM	PubChem BioAssay data set
NPT402	Cell line	Hs-578T	Homo sapiens	GI50	n.a.	14256.08	nM	PubChem BioAssay data set
NPT403	Cell line	UACC-257	Homo sapiens	GI50	n.a.	4709.77	nM	PubChem BioAssay data set
NPT139	Cell line	HT-29	Homo sapiens	GI50	n.a.	4666.59	nM	PubChem BioAssay data set
NPT405	Cell line	NCI-H226	Homo sapiens	GI50	n.a.	14125.38	nM	PubChem BioAssay data set
NPT170	Cell line	SK-MEL-28	Homo sapiens	GI50	n.a.	10209.39	nM	PubChem BioAssay data set
NPT406	Cell line	RXF 393	Homo sapiens	GI50	n.a.	6745.28	nM	PubChem BioAssay data set
NPT407	Cell line	COLO 205	Homo sapiens	GI50	n.a.	3935.5	nM	PubChem BioAssay data set
NPT165	Cell line	HeLa	Homo sapiens	IC50	=	5800.0	nM	PMID[22944119]
NPT165	Cell line	HeLa	Homo sapiens	IC50	=	3000.0	nM	PMID[22944119]
NPT83	Cell line	MCF7	Homo sapiens	IC50	=	8300.0	nM	PMID[22944119]
NPT83	Cell line	MCF7	Homo sapiens	IC50	=	5700.0	nM	PMID[22944119]
NPT783	Cell line	MIA PaCa-2	Homo sapiens	IC50	=	5200.0	nM	PMID[22944119]
NPT783	Cell line	MIA PaCa-2	Homo sapiens	IC50	=	3800.0	nM	PMID[22944119]
NPT20529	Non-molecular	NON-PROTEIN TARGET	n.a.	IC50	=	286970.0	nM	PMID[21028890]
NPT1	Others	Radical scavenging activity	n.a.	IC50	=	765600.0	nM	PMID[21028890]
NPT24	Organism	Human immunodeficiency virus 1	Human immunodeficiency virus 1	IC50	=	1530.0	nM	PMID[21414776]
NPT24	Organism	Human immunodeficiency virus 1	Human immunodeficiency virus 1	IC50	=	1130.0	nM	PMID[21414776]
NPT24	Organism	Human immunodeficiency virus 1	Human immunodeficiency virus 1	EC50	=	20.0	nM	PMID[21414776]

In vivo activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

Experimental ADME

Experiment Model	Experiment Tissue	ADME Type	ADME Relation	ADME Value	ADME Unit	Reference

Experimental Toxicity

Quantitative toxicity

Experiment Model	Experiment Organism	Toxicity Type	Toxicity Relation	Toxicity Value	Toxicity Unit	Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity	Carcinogenicity	Mutagenicity	Cardiotoxicity	Respiratory Toxicity	Eye Irritation	Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
☉ ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
☉ TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]

Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

● The left chart: Distribution of similarity level between NPC130591 and all remaining natural products in the NPASS database.
● The right table: Most similar natural products (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	7624
0.1-0.2	40138
0.2-0.3	1923
0.3-0.4	76
0.4-0.5	43
0.5-0.6	20
0.6-0.7	30
0.7-0.8	0
0.8-0.85	0
0.85-0.9	1
0.9-0.95	0
0.95-1	2

Similarity Score	Similarity Level	Natural Product ID
1.0	High Similarity	NPC259400
1.0	High Similarity	NPC234637
0.8929	High Similarity	NPC611064
0.7705	Intermediate Similarity	NPC149773
0.6818	Remote Similarity	NPC600618
0.6812	Remote Similarity	NPC165191
0.6812	Remote Similarity	NPC30846
0.6812	Remote Similarity	NPC177501
0.6774	Remote Similarity	NPC471481
0.6774	Remote Similarity	NPC610194
0.6667	Remote Similarity	NPC114333
0.6667	Remote Similarity	NPC28592
0.6667	Remote Similarity	NPC51531
0.662	Remote Similarity	NPC603871
0.6618	Remote Similarity	NPC46242
0.6618	Remote Similarity	NPC479147
0.6618	Remote Similarity	NPC91887
0.6618	Remote Similarity	NPC93556
0.6571	Remote Similarity	NPC473479
0.6571	Remote Similarity	NPC50615
0.6571	Remote Similarity	NPC141650
0.6522	Remote Similarity	NPC297797
0.6522	Remote Similarity	NPC198803
0.6338	Remote Similarity	NPC469857
0.6338	Remote Similarity	NPC245760
0.6301	Remote Similarity	NPC237441
0.6232	Remote Similarity	NPC289358
0.6232	Remote Similarity	NPC4289
0.6232	Remote Similarity	NPC42384
0.6212	Remote Similarity	NPC218855
0.6164	Remote Similarity	NPC471971
0.6164	Remote Similarity	NPC471972
0.6164	Remote Similarity	NPC469855
0.614	Remote Similarity	NPC602123
0.5932	Remote Similarity	NPC600619
0.5867	Remote Similarity	NPC25736
0.5733	Remote Similarity	NPC5014
0.5658	Remote Similarity	NPC469856
0.56	Remote Similarity	NPC23667
0.56	Remote Similarity	NPC157284
0.56	Remote Similarity	NPC294330
0.5584	Remote Similarity	NPC471970
0.5526	Remote Similarity	NPC469854
0.541	Remote Similarity	NPC605738
0.5405	Remote Similarity	NPC48949
0.5263	Remote Similarity	NPC479148
0.525	Remote Similarity	NPC482618
0.5205	Remote Similarity	NPC483069
0.5205	Remote Similarity	NPC268930
0.5195	Remote Similarity	NPC482621
0.5195	Remote Similarity	NPC479151
0.5185	Remote Similarity	NPC482617
0.5185	Remote Similarity	NPC482616
0.5139	Remote Similarity	NPC608846

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

● The left chart: Distribution of similarity level between NPC130591 and all drugs/candidates.
● The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	2580
0.1-0.2	6405
0.2-0.3	164
0.3-0.4	1
0.4-0.5	0
0.5-0.6	0
0.6-0.7	0
0.7-0.8	0
0.8-0.85	0
0.85-0.9	0
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Drug ID	Developmental Stage
		NPD

Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity

B: biological targets similarity

C: networks similarity

D: cell-based bioactivity similarity

E: similarity based on clinical data