Structure

Physi-Chem Properties

Molecular Weight:  344.13
Volume:  351.717
LogP:  3.319
LogD:  3.267
LogS:  -5.232
# Rotatable Bonds:  7
TPSA:  74.22
# H-Bond Aceptor:  6
# H-Bond Donor:  1
# Rings:  2
# Heavy Atoms:  6

MedChem Properties

QED Drug-Likeness Score:  0.613
Synthetic Accessibility Score:  2.234
Fsp3:  0.211
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Accepted
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.812
MDCK Permeability:  1.8748247384792194e-05
Pgp-inhibitor:  0.068
Pgp-substrate:  0.957
Human Intestinal Absorption (HIA):  0.009
20% Bioavailability (F20%):  0.003
30% Bioavailability (F30%):  0.021

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.096
Plasma Protein Binding (PPB):  89.73713684082031%
Volume Distribution (VD):  0.463
Pgp-substrate:  7.626786708831787%

ADMET: Metabolism

CYP1A2-inhibitor:  0.955
CYP1A2-substrate:  0.938
CYP2C19-inhibitor:  0.902
CYP2C19-substrate:  0.8
CYP2C9-inhibitor:  0.672
CYP2C9-substrate:  0.952
CYP2D6-inhibitor:  0.657
CYP2D6-substrate:  0.931
CYP3A4-inhibitor:  0.9
CYP3A4-substrate:  0.517

ADMET: Excretion

Clearance (CL):  10.357
Half-life (T1/2):  0.5

ADMET: Toxicity

hERG Blockers:  0.196
Human Hepatotoxicity (H-HT):  0.114
Drug-inuced Liver Injury (DILI):  0.738
AMES Toxicity:  0.391
Rat Oral Acute Toxicity:  0.381
Maximum Recommended Daily Dose:  0.2
Skin Sensitization:  0.781
Carcinogencity:  0.389
Eye Corrosion:  0.008
Eye Irritation:  0.929
Respiratory Toxicity:  0.867

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  Natural Product: NPC119663

Natural Product ID:  NPC119663
Common Name*:   2'-Hydroxy-2,3,4',6',Tetramethoxychalcone
IUPAC Name:   (E)-3-(2,3-dimethoxyphenyl)-1-(2-hydroxy-4,6-dimethoxyphenyl)prop-2-en-1-one
Synonyms:   2'-Hydroxy-2,3,4',6',Tetramethoxychalcone
Standard InCHIKey:  LYUYMCWIWGASRX-CMDGGOBGSA-N
Standard InCHI:  InChI=1S/C19H20O6/c1-22-13-10-15(21)18(17(11-13)24-3)14(20)9-8-12-6-5-7-16(23-2)19(12)25-4/h5-11,21H,1-4H3/b9-8+
SMILES:  COc1cc(O)c(c(c1)OC)C(=O)/C=C/c1cccc(c1OC)OC
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL1254091
PubChem CID:   10337542
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0003467] Linear 1,3-diarylpropanoids
        • [CHEMONTID:0001630] Chalcones and dihydrochalcones
          • [CHEMONTID:0003472] 2'-Hydroxychalcones

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. DOI[10.1016/0031-9422(90)85349-K]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. root n.a. DOI[10.1186/1471-2202-6-1]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[10579865]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. leaf n.a. PMID[10716597]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[10757718]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[11374948]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[11561442]
NPO17333 Valeriana officinalis Species Caprifoliaceae Eukaryota roots n.a. n.a. PMID[12398547]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[12579877]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. root n.a. PMID[1375626]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[1375626]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. root n.a. PMID[1602302]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[1602302]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. root n.a. PMID[16864458]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota roots n.a. n.a. PMID[16989518]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. root n.a. PMID[17250858]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[17265278]
NPO17333 Valeriana officinalis Species Caprifoliaceae Eukaryota n.a. root n.a. PMID[18164718]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. root n.a. PMID[1823717]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. leaf n.a. PMID[1823717]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[18554602]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. bark n.a. PMID[18996177]
NPO17186 Sibiraea angustata Species Rosaceae Eukaryota n.a. aerial part n.a. PMID[19252323]
NPO17333 Valeriana officinalis Species Caprifoliaceae Eukaryota n.a. n.a. n.a. PMID[20853876]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota root n.a. n.a. PMID[21486005]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. root n.a. PMID[21486005]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[21514608]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota dried roots purchased from Sichuan Neautus Traditional Chinese Medicine Co. Ltd. (Chengdu, P.R. China) n.a. PMID[22148431]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota leaves n.a. n.a. PMID[23268606]
NPO19747 Maytenus emarginata Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[2380715]
NPO19747 Maytenus emarginata Species Celastraceae Eukaryota n.a. stem n.a. PMID[2380715]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[23852638]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[24549173]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[24963543]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[25237706]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. bark n.a. PMID[2534610]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. root n.a. PMID[2816380]
NPO17333 Valeriana officinalis Species Caprifoliaceae Eukaryota n.a. n.a. n.a. PMID[28485933]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota Leaves n.a. n.a. PMID[29355322]
NPO1534 Jatropha gossypiifolia Species Euphorbiaceae Eukaryota n.a. n.a. n.a. PMID[30106289]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota Leaves n.a. n.a. PMID[31556299]
NPO17333 Valeriana officinalis Species Caprifoliaceae Eukaryota n.a. root n.a. PMID[547813]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[7102323]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[7304185]
NPO19747 Maytenus emarginata Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[8176403]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[8699928]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[8722541]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. Database[Article]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. root n.a. Database[Article]
NPO18131 Micromelum falcatum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16481 Xanthium canadense Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18492 Prunus pseudocerasus Species Rosaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO17333 Valeriana officinalis Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14941 Delphinium tricorne Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19614 Erica cinerea Species Ericaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19614 Erica cinerea Species Ericaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17333 Valeriana officinalis Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14595 Lactarius torminosus Species Russulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18131 Micromelum falcatum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18492 Prunus pseudocerasus Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14941 Delphinium tricorne Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1534 Jatropha gossypiifolia Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16481 Xanthium canadense Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17333 Valeriana officinalis Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO18492 Prunus pseudocerasus Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO25549 Rhizophagus intraradices Species Glomeraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18576 Vernonia aurea Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6642 Mocis latipes Species 0ctuidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16727 Iris sibirica Species Iridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18326 Eria siamensis Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1457 Phoma asparagi Species Didymellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12464 Litsea nitida Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18653 Cyathus intermedius Species Nidulariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19747 Maytenus emarginata Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14595 Lactarius torminosus Species Russulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9142 Aeschynanthus parvifolius Species Gesneriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19222 Mycale tenuis Species Mycalidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6570 Cinnamomum philippinense Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18492 Prunus pseudocerasus Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19614 Erica cinerea Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14941 Delphinium tricorne Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18986 Betula papyrifera Species Betulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15370 Tamarix dioica Species Tamaricaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19069 Thelepus setosus Species Terebellidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17333 Valeriana officinalis Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7328 Salvia miniata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17987 Mycosphaerella nawae Species Mycosphaerellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18747 Bufo bankorensis Species Bufonidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2351 Echinocardium cordatum Species Loveniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11763 Cyperus capitatus Species Cyperaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18131 Micromelum falcatum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19416 Streptomyces sakaiensis Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO16481 Xanthium canadense Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1560 Boronia alata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15709 Lobelia langeana Species Campanulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17050 Haemanthus albiflos Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17876 Magnolia henryi Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19683 Pycnothymus rigidus n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO20618 Penicilliopsis clavariiformis Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1534 Jatropha gossypiifolia Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16034 Lecanora sulphurata Species Lecanoraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19350 Ephedra altissima Species Ephedraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18899 Keyserlingia koreensis n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO17433 Peltophorum dubium Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17186 Sibiraea angustata Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10957 Cladosiphon okamuranus Species Chordariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16256 Helleborus viridis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18824 Alpinia pulcherrima Species Staphylinidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19495 Bignonia unguiscati Species Bignoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4171 Isolona pilosa Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19285 Chromodoris cavae Species Chromodorididae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17565 Hordeum bulbosum Species Poaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19554 Coronilla hyrcana Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13245 Agelas longissima Species Agelasidae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT81 Cell Line A549 Homo sapiens Activity = 59.0 % PMID[515235]
NPT81 Cell Line A549 Homo sapiens Activity = 92.0 % PMID[515235]
NPT81 Cell Line A549 Homo sapiens Activity = 23.0 % PMID[515235]
NPT81 Cell Line A549 Homo sapiens Activity = 96.0 % PMID[515235]
NPT81 Cell Line A549 Homo sapiens Activity = 70.0 % PMID[515235]
NPT393 Cell Line HCT-116 Homo sapiens IC50 = 3500.0 nM PMID[515236]
NPT610 Others Molecular identity unknown Activity = 25.0 % PMID[515235]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC119663 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9714 High Similarity NPC119660
0.9714 High Similarity NPC93034
0.971 High Similarity NPC254659
0.971 High Similarity NPC471417
0.9643 High Similarity NPC12377
0.964 High Similarity NPC142165
0.9638 High Similarity NPC284556
0.9638 High Similarity NPC301178
0.9632 High Similarity NPC44573
0.9577 High Similarity NPC102003
0.9577 High Similarity NPC92722
0.9565 High Similarity NPC110419
0.9559 High Similarity NPC473391
0.9559 High Similarity NPC472364
0.951 High Similarity NPC472279
0.9507 High Similarity NPC80710
0.9507 High Similarity NPC203747
0.9507 High Similarity NPC139364
0.9507 High Similarity NPC254702
0.9507 High Similarity NPC15329
0.9507 High Similarity NPC194653
0.9507 High Similarity NPC195202
0.9507 High Similarity NPC131451
0.95 High Similarity NPC207732
0.9496 High Similarity NPC312256
0.9444 High Similarity NPC308451
0.9444 High Similarity NPC262623
0.9444 High Similarity NPC256406
0.9441 High Similarity NPC142876
0.9441 High Similarity NPC264550
0.9441 High Similarity NPC40290
0.9441 High Similarity NPC69430
0.9441 High Similarity NPC264289
0.9441 High Similarity NPC195763
0.9441 High Similarity NPC200060
0.9441 High Similarity NPC333691
0.9441 High Similarity NPC139293
0.9437 High Similarity NPC33265
0.9437 High Similarity NPC12200
0.9437 High Similarity NPC62536
0.9433 High Similarity NPC157133
0.9429 High Similarity NPC287722
0.9379 High Similarity NPC60972
0.9379 High Similarity NPC474993
0.9379 High Similarity NPC477231
0.9379 High Similarity NPC39732
0.9379 High Similarity NPC257648
0.9375 High Similarity NPC239363
0.9375 High Similarity NPC50728
0.9375 High Similarity NPC234152
0.9375 High Similarity NPC156953
0.9375 High Similarity NPC166753
0.9371 High Similarity NPC287395
0.9371 High Similarity NPC183655
0.9366 High Similarity NPC165389
0.9357 High Similarity NPC185607
0.9353 High Similarity NPC50823
0.9338 High Similarity NPC56031
0.9338 High Similarity NPC192304
0.9338 High Similarity NPC139813
0.9338 High Similarity NPC337373
0.9338 High Similarity NPC188646
0.9338 High Similarity NPC175098
0.9338 High Similarity NPC263670
0.9338 High Similarity NPC472365
0.9338 High Similarity NPC242294
0.9338 High Similarity NPC312318
0.9315 High Similarity NPC472915
0.9315 High Similarity NPC124714
0.931 High Similarity NPC236769
0.931 High Similarity NPC208043
0.931 High Similarity NPC226973
0.931 High Similarity NPC31363
0.9306 High Similarity NPC52005
0.9306 High Similarity NPC38545
0.9306 High Similarity NPC171916
0.9306 High Similarity NPC223579
0.9306 High Similarity NPC328119
0.9306 High Similarity NPC183950
0.9306 High Similarity NPC48479
0.9306 High Similarity NPC159103
0.9306 High Similarity NPC137062
0.9306 High Similarity NPC287101
0.9306 High Similarity NPC177298
0.9301 High Similarity NPC188074
0.9301 High Similarity NPC125449
0.9286 High Similarity NPC58229
0.927 High Similarity NPC286336
0.9265 High Similarity NPC257756
0.9265 High Similarity NPC205468
0.9265 High Similarity NPC212631
0.9265 High Similarity NPC129132
0.9265 High Similarity NPC87231
0.9252 High Similarity NPC57674
0.9252 High Similarity NPC168247
0.9252 High Similarity NPC234255
0.9252 High Similarity NPC20830
0.9252 High Similarity NPC31018
0.9252 High Similarity NPC117992
0.9252 High Similarity NPC255807
0.9252 High Similarity NPC256612
0.9252 High Similarity NPC152951
0.9252 High Similarity NPC230149
0.9247 High Similarity NPC100263
0.9247 High Similarity NPC35763
0.9247 High Similarity NPC269451
0.9247 High Similarity NPC181209
0.9247 High Similarity NPC245382
0.9247 High Similarity NPC121522
0.9247 High Similarity NPC304954
0.9247 High Similarity NPC131266
0.9247 High Similarity NPC216769
0.9247 High Similarity NPC55205
0.9247 High Similarity NPC472912
0.9247 High Similarity NPC100971
0.9247 High Similarity NPC291802
0.9247 High Similarity NPC209487
0.9241 High Similarity NPC29231
0.9241 High Similarity NPC306821
0.9241 High Similarity NPC219330
0.9241 High Similarity NPC85131
0.9241 High Similarity NPC338131
0.9236 High Similarity NPC203077
0.9236 High Similarity NPC120464
0.9236 High Similarity NPC474903
0.9236 High Similarity NPC261548
0.9236 High Similarity NPC238279
0.9236 High Similarity NPC166036
0.9225 High Similarity NPC105213
0.9225 High Similarity NPC113089
0.9225 High Similarity NPC293201
0.9225 High Similarity NPC38065
0.9225 High Similarity NPC242893
0.922 High Similarity NPC49108
0.9214 High Similarity NPC109232
0.9197 High Similarity NPC159623
0.9197 High Similarity NPC82225
0.9197 High Similarity NPC204960
0.9197 High Similarity NPC294593
0.9197 High Similarity NPC18877
0.9197 High Similarity NPC20560
0.9197 High Similarity NPC144051
0.9197 High Similarity NPC28753
0.9191 High Similarity NPC308037
0.9191 High Similarity NPC64359
0.9191 High Similarity NPC262359
0.9189 High Similarity NPC265511
0.9189 High Similarity NPC472455
0.9189 High Similarity NPC472916
0.9184 High Similarity NPC227337
0.9184 High Similarity NPC69394
0.9184 High Similarity NPC70433
0.9184 High Similarity NPC273462
0.9184 High Similarity NPC270620
0.9184 High Similarity NPC280937
0.9184 High Similarity NPC231018
0.9184 High Similarity NPC236223
0.9184 High Similarity NPC78326
0.9184 High Similarity NPC47781
0.9184 High Similarity NPC86485
0.9184 High Similarity NPC49402
0.9184 High Similarity NPC255350
0.9184 High Similarity NPC179126
0.9184 High Similarity NPC22519
0.9184 High Similarity NPC18727
0.9184 High Similarity NPC176775
0.9184 High Similarity NPC33051
0.9184 High Similarity NPC469550
0.9184 High Similarity NPC250557
0.9184 High Similarity NPC274327
0.9184 High Similarity NPC475895
0.9184 High Similarity NPC183878
0.9184 High Similarity NPC160951
0.9184 High Similarity NPC145379
0.9178 High Similarity NPC252933
0.9178 High Similarity NPC45291
0.9178 High Similarity NPC149614
0.9178 High Similarity NPC76376
0.9178 High Similarity NPC54394
0.9178 High Similarity NPC19980
0.9178 High Similarity NPC200740
0.9178 High Similarity NPC117579
0.9178 High Similarity NPC125062
0.9167 High Similarity NPC95864
0.9167 High Similarity NPC108406
0.9167 High Similarity NPC168803
0.9161 High Similarity NPC471590
0.9161 High Similarity NPC136278
0.9161 High Similarity NPC296575
0.9155 High Similarity NPC9966
0.9155 High Similarity NPC70853
0.9155 High Similarity NPC476054
0.9143 High Similarity NPC21350
0.9137 High Similarity NPC66349
0.9137 High Similarity NPC477242
0.9137 High Similarity NPC98115
0.9137 High Similarity NPC150399
0.9137 High Similarity NPC477244
0.9137 High Similarity NPC477243
0.9137 High Similarity NPC1486

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC119663 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9189 High Similarity NPD3882 Suspended
0.9184 High Similarity NPD2801 Approved
0.9116 High Similarity NPD1934 Approved
0.9051 High Similarity NPD1240 Approved
0.8958 High Similarity NPD1511 Approved
0.8929 High Similarity NPD1510 Phase 2
0.8926 High Similarity NPD2393 Clinical (unspecified phase)
0.8921 High Similarity NPD1607 Approved
0.8836 High Similarity NPD1512 Approved
0.8742 High Similarity NPD3817 Phase 2
0.8654 High Similarity NPD6168 Clinical (unspecified phase)
0.8654 High Similarity NPD6167 Clinical (unspecified phase)
0.8654 High Similarity NPD6166 Phase 2
0.8645 High Similarity NPD6232 Discontinued
0.8643 High Similarity NPD943 Approved
0.8639 High Similarity NPD4378 Clinical (unspecified phase)
0.8611 High Similarity NPD1549 Phase 2
0.86 High Similarity NPD4380 Phase 2
0.8599 High Similarity NPD7473 Discontinued
0.8571 High Similarity NPD6799 Approved
0.8544 High Similarity NPD3818 Discontinued
0.8542 High Similarity NPD1550 Clinical (unspecified phase)
0.8542 High Similarity NPD1552 Clinical (unspecified phase)
0.8491 Intermediate Similarity NPD7054 Approved
0.8483 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.8472 Intermediate Similarity NPD2796 Approved
0.8438 Intermediate Similarity NPD7074 Phase 3
0.8438 Intermediate Similarity NPD7472 Approved
0.84 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.8397 Intermediate Similarity NPD5494 Approved
0.8389 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.8387 Intermediate Similarity NPD7075 Discontinued
0.8345 Intermediate Similarity NPD2935 Discontinued
0.8323 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.8312 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.8312 Intermediate Similarity NPD7819 Suspended
0.8282 Intermediate Similarity NPD7808 Phase 3
0.8272 Intermediate Similarity NPD6797 Phase 2
0.8269 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.8239 Intermediate Similarity NPD3926 Phase 2
0.8235 Intermediate Similarity NPD6599 Discontinued
0.8221 Intermediate Similarity NPD7251 Discontinued
0.8182 Intermediate Similarity NPD7411 Suspended
0.8171 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.8141 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.8129 Intermediate Similarity NPD6801 Discontinued
0.8129 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.8121 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.8101 Intermediate Similarity NPD919 Approved
0.8095 Intermediate Similarity NPD1551 Phase 2
0.8069 Intermediate Similarity NPD447 Suspended
0.8069 Intermediate Similarity NPD230 Phase 1
0.8042 Intermediate Similarity NPD3027 Phase 3
0.8037 Intermediate Similarity NPD5844 Phase 1
0.8028 Intermediate Similarity NPD9494 Approved
0.8027 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.8014 Intermediate Similarity NPD6651 Approved
0.8 Intermediate Similarity NPD3750 Approved
0.8 Intermediate Similarity NPD1247 Approved
0.7986 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7962 Intermediate Similarity NPD1465 Phase 2
0.7961 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7922 Intermediate Similarity NPD5403 Approved
0.7911 Intermediate Similarity NPD5402 Approved
0.7908 Intermediate Similarity NPD2532 Approved
0.7908 Intermediate Similarity NPD2534 Approved
0.7908 Intermediate Similarity NPD2533 Approved
0.7905 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.7888 Intermediate Similarity NPD6959 Discontinued
0.7883 Intermediate Similarity NPD5536 Phase 2
0.7862 Intermediate Similarity NPD7768 Phase 2
0.7853 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7831 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7823 Intermediate Similarity NPD1933 Approved
0.7818 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.7815 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7815 Intermediate Similarity NPD2800 Approved
0.7812 Intermediate Similarity NPD3749 Approved
0.78 Intermediate Similarity NPD2344 Approved
0.7792 Intermediate Similarity NPD5401 Approved
0.7784 Intermediate Similarity NPD6559 Discontinued
0.7778 Intermediate Similarity NPD3018 Phase 2
0.7763 Intermediate Similarity NPD4628 Phase 3
0.7762 Intermediate Similarity NPD1203 Approved
0.7727 Intermediate Similarity NPD4357 Discontinued
0.7724 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7708 Intermediate Similarity NPD2798 Approved
0.7697 Intermediate Similarity NPD1243 Approved
0.7697 Intermediate Similarity NPD2654 Approved
0.7667 Intermediate Similarity NPD3748 Approved
0.7667 Intermediate Similarity NPD2799 Discontinued
0.7655 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7635 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7635 Intermediate Similarity NPD1613 Approved
0.7622 Intermediate Similarity NPD2982 Phase 2
0.7622 Intermediate Similarity NPD2983 Phase 2
0.7619 Intermediate Similarity NPD5953 Discontinued
0.7616 Intermediate Similarity NPD6100 Approved
0.7616 Intermediate Similarity NPD6099 Approved
0.7613 Intermediate Similarity NPD7390 Discontinued
0.7603 Intermediate Similarity NPD6832 Phase 2
0.7597 Intermediate Similarity NPD2309 Approved
0.7584 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.758 Intermediate Similarity NPD920 Approved
0.7576 Intermediate Similarity NPD5242 Approved
0.7562 Intermediate Similarity NPD37 Approved
0.7561 Intermediate Similarity NPD7199 Phase 2
0.7554 Intermediate Similarity NPD9493 Approved
0.7552 Intermediate Similarity NPD3972 Approved
0.7552 Intermediate Similarity NPD2981 Phase 2
0.7552 Intermediate Similarity NPD9717 Approved
0.7552 Intermediate Similarity NPD9269 Phase 2
0.7548 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.7518 Intermediate Similarity NPD9268 Approved
0.75 Intermediate Similarity NPD7286 Phase 2
0.75 Intermediate Similarity NPD6385 Approved
0.75 Intermediate Similarity NPD6386 Approved
0.7484 Intermediate Similarity NPD3226 Approved
0.7484 Intermediate Similarity NPD6190 Approved
0.7471 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.747 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7469 Intermediate Similarity NPD5353 Approved
0.7467 Intermediate Similarity NPD1899 Clinical (unspecified phase)
0.7452 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7447 Intermediate Similarity NPD9545 Approved
0.7439 Intermediate Similarity NPD6234 Discontinued
0.7427 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.7423 Intermediate Similarity NPD4965 Approved
0.7423 Intermediate Similarity NPD4967 Phase 2
0.7423 Intermediate Similarity NPD4966 Approved
0.7419 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7397 Intermediate Similarity NPD1470 Approved
0.7383 Intermediate Similarity NPD2313 Discontinued
0.7383 Intermediate Similarity NPD411 Approved
0.7375 Intermediate Similarity NPD7458 Discontinued
0.7365 Intermediate Similarity NPD4908 Phase 1
0.7361 Intermediate Similarity NPD422 Phase 1
0.7361 Intermediate Similarity NPD1547 Clinical (unspecified phase)
0.7361 Intermediate Similarity NPD1201 Approved
0.7338 Intermediate Similarity NPD5283 Phase 1
0.7338 Intermediate Similarity NPD2346 Discontinued
0.7337 Intermediate Similarity NPD3751 Discontinued
0.7324 Intermediate Similarity NPD1548 Phase 1
0.7319 Intermediate Similarity NPD228 Approved
0.7312 Intermediate Similarity NPD1653 Approved
0.731 Intermediate Similarity NPD1608 Approved
0.7305 Intermediate Similarity NPD5710 Approved
0.7305 Intermediate Similarity NPD5711 Approved
0.7299 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7288 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD5406 Approved
0.7273 Intermediate Similarity NPD5404 Approved
0.7273 Intermediate Similarity NPD5405 Approved
0.7273 Intermediate Similarity NPD5408 Approved
0.7267 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7267 Intermediate Similarity NPD7685 Pre-registration
0.7267 Intermediate Similarity NPD3268 Approved
0.7241 Intermediate Similarity NPD1610 Phase 2
0.7226 Intermediate Similarity NPD3540 Phase 1
0.7211 Intermediate Similarity NPD1876 Approved
0.7208 Intermediate Similarity NPD7033 Discontinued
0.7208 Intermediate Similarity NPD4308 Phase 3
0.7202 Intermediate Similarity NPD3787 Discontinued
0.7183 Intermediate Similarity NPD405 Clinical (unspecified phase)
0.7162 Intermediate Similarity NPD1164 Approved
0.7162 Intermediate Similarity NPD2797 Approved
0.7161 Intermediate Similarity NPD3539 Phase 1
0.7152 Intermediate Similarity NPD3764 Approved
0.7135 Intermediate Similarity NPD7228 Approved
0.7127 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7125 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7125 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.7118 Intermediate Similarity NPD2403 Approved
0.7103 Intermediate Similarity NPD17 Approved
0.7095 Intermediate Similarity NPD3225 Approved
0.7092 Intermediate Similarity NPD1241 Discontinued
0.7089 Intermediate Similarity NPD7003 Approved
0.7086 Intermediate Similarity NPD4625 Phase 3
0.7073 Intermediate Similarity NPD5089 Approved
0.7073 Intermediate Similarity NPD5090 Approved
0.7066 Intermediate Similarity NPD6971 Discontinued
0.7055 Intermediate Similarity NPD3455 Phase 2
0.7055 Intermediate Similarity NPD824 Approved
0.7052 Intermediate Similarity NPD1729 Discontinued
0.7048 Intermediate Similarity NPD2296 Approved
0.7048 Intermediate Similarity NPD5978 Approved
0.7048 Intermediate Similarity NPD4288 Approved
0.7048 Intermediate Similarity NPD5977 Approved
0.7044 Intermediate Similarity NPD2354 Approved
0.7039 Intermediate Similarity NPD6798 Discontinued
0.7035 Intermediate Similarity NPD2163 Approved
0.7034 Intermediate Similarity NPD1651 Approved
0.703 Intermediate Similarity NPD6844 Discontinued
0.7027 Intermediate Similarity NPD4749 Approved
0.7019 Intermediate Similarity NPD4662 Approved
0.7019 Intermediate Similarity NPD4661 Approved
0.7018 Intermediate Similarity NPD7784 Clinical (unspecified phase)
0.7017 Intermediate Similarity NPD4360 Phase 2
0.7017 Intermediate Similarity NPD4363 Phase 3
0.7013 Intermediate Similarity NPD6355 Discontinued

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data