Natural Product: NPC471680

Natural Product ID:  NPC471680
Common Name:   (3R)-Thiomethyl-3,11-Dihydrophomazine A
IUPAC Name:   (3R,5aS,6S,10aR)-3-benzyl-6-hydroxy-3,10a-bis(methylsulfanyl)-2,5a,6,10-tetrahydropyrazino[1,2-a]indole-1,4-dione
Synonyms:  
Molecular Formula:   C20H22N2O3S2
Standard InCHIKey:  RLFWHXFCMHLBFD-XAMWDVODSA-N
Standard InCHI:  InChI=1S/C20H22N2O3S2/c1-26-19(11-13-7-4-3-5-8-13)18(25)22-16-14(9-6-10-15(16)23)12-20(22,27-2)17(24)21-19/h3-10,15-16,23H,11-12H2,1-2H3,(H,21,24)/t15-,16-,19+,20+/m0/s1
Canonical SMILES:  CS[C@@]1(Cc2ccccc2)N=C(O)[C@]2(N(C1=O)[C@@H]1[C@@H](O)C=CC=C1C2)SC
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO33508 Phoma sp. OUCMDZ-1847 Species Didymellaceae Eukaryota PMID[24370114]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT116 Cell Line HL-60 Homo sapiens IC50 > 10000 nM 8158155
NPT393 Cell Line HCT-116 Homo sapiens IC50 > 10000 nM 8158155
NPT3140 Cell Line MGC-803 Homo sapiens IC50 = 8500 nM 21417417
NPT111 Cell Line K562 Homo sapiens IC50 > 10000 nM 21417417
NPT81 Cell Line A549 Homo sapiens IC50 > 10000 nM 8277313

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC471680 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.8235 Intermediate Similarity NPC175726
0.8235 Intermediate Similarity NPC474082
0.7985 Intermediate Similarity NPC315276
0.7985 Intermediate Similarity NPC14672
0.7985 Intermediate Similarity NPC285926
0.7887 Intermediate Similarity NPC300315
0.7842 Intermediate Similarity NPC6975
0.777 Intermediate Similarity NPC252878
0.7763 Intermediate Similarity NPC283783
0.7755 Intermediate Similarity NPC242159
0.7755 Intermediate Similarity NPC313694
0.7714 Intermediate Similarity NPC46427
0.7704 Intermediate Similarity NPC33742
0.7698 Intermediate Similarity NPC202521
0.7671 Intermediate Similarity NPC248283
0.7626 Intermediate Similarity NPC200964
0.7626 Intermediate Similarity NPC302169
0.7626 Intermediate Similarity NPC476990
0.7586 Intermediate Similarity NPC255447
0.7569 Intermediate Similarity NPC469666
0.75 Intermediate Similarity NPC322878
0.7483 Intermediate Similarity NPC468984
0.7483 Intermediate Similarity NPC287401
0.7482 Intermediate Similarity NPC220698
0.7468 Intermediate Similarity NPC105717
0.7466 Intermediate Similarity NPC130309
0.7448 Intermediate Similarity NPC473322
0.7434 Intermediate Similarity NPC476978
0.7419 Intermediate Similarity NPC13470
0.7403 Intermediate Similarity NPC16188
0.74 Intermediate Similarity NPC89489
0.7386 Intermediate Similarity NPC209509
0.7383 Intermediate Similarity NPC9687
0.7383 Intermediate Similarity NPC293377
0.7383 Intermediate Similarity NPC151706
0.7383 Intermediate Similarity NPC118099
0.7383 Intermediate Similarity NPC474811
0.7383 Intermediate Similarity NPC76785
0.7383 Intermediate Similarity NPC79465
0.7383 Intermediate Similarity NPC474855
0.7383 Intermediate Similarity NPC260045
0.7383 Intermediate Similarity NPC474787
0.7383 Intermediate Similarity NPC475598
0.7383 Intermediate Similarity NPC273907
0.7383 Intermediate Similarity NPC49577
0.7383 Intermediate Similarity NPC90194
0.7383 Intermediate Similarity NPC475318
0.7383 Intermediate Similarity NPC476102
0.7333 Intermediate Similarity NPC471264
0.7333 Intermediate Similarity NPC471265
0.7329 Intermediate Similarity NPC111428
0.7296 Intermediate Similarity NPC476268
0.7286 Intermediate Similarity NPC470545
0.7285 Intermediate Similarity NPC92784
0.7285 Intermediate Similarity NPC476133
0.7285 Intermediate Similarity NPC470884
0.7285 Intermediate Similarity NPC178662
0.7285 Intermediate Similarity NPC98424
0.7279 Intermediate Similarity NPC200589
0.7278 Intermediate Similarity NPC286551
0.7273 Intermediate Similarity NPC5620
0.7255 Intermediate Similarity NPC161069
0.7246 Intermediate Similarity NPC276949
0.7246 Intermediate Similarity NPC35850
0.7234 Intermediate Similarity NPC470546
0.7226 Intermediate Similarity NPC314358
0.7214 Intermediate Similarity NPC470544
0.7208 Intermediate Similarity NPC315283
0.7208 Intermediate Similarity NPC52748
0.7208 Intermediate Similarity NPC314388
0.7202 Intermediate Similarity NPC317362
0.7202 Intermediate Similarity NPC318930
0.7202 Intermediate Similarity NPC317725
0.7202 Intermediate Similarity NPC326407
0.7197 Intermediate Similarity NPC2501
0.719 Intermediate Similarity NPC269398
0.719 Intermediate Similarity NPC263493
0.7186 Intermediate Similarity NPC89831
0.717 Intermediate Similarity NPC122590
0.717 Intermediate Similarity NPC202198
0.717 Intermediate Similarity NPC473341
0.717 Intermediate Similarity NPC262166
0.7161 Intermediate Similarity NPC316008
0.7161 Intermediate Similarity NPC315266
0.7161 Intermediate Similarity NPC313867
0.7152 Intermediate Similarity NPC473491
0.7152 Intermediate Similarity NPC7817
0.7152 Intermediate Similarity NPC475168
0.7143 Intermediate Similarity NPC319766
0.7124 Intermediate Similarity NPC163392
0.7124 Intermediate Similarity NPC239762
0.7115 Intermediate Similarity NPC262077
0.7107 Intermediate Similarity NPC233702
0.7089 Intermediate Similarity NPC129666
0.7086 Intermediate Similarity NPC329731
0.7083 Intermediate Similarity NPC71684
0.7078 Intermediate Similarity NPC476989
0.707 Intermediate Similarity NPC138775
0.7066 Intermediate Similarity NPC315388
0.7041 Intermediate Similarity NPC137627
0.7025 Intermediate Similarity NPC471821
0.7025 Intermediate Similarity NPC471820
0.7019 Intermediate Similarity NPC470902
0.7007 Intermediate Similarity NPC101719
0.7 Intermediate Similarity NPC136797
0.7 Intermediate Similarity NPC162104
0.6994 Remote Similarity NPC477637
0.6994 Remote Similarity NPC326349
0.6994 Remote Similarity NPC323336
0.6972 Remote Similarity NPC17581
0.6972 Remote Similarity NPC476155
0.6964 Remote Similarity NPC280022
0.6962 Remote Similarity NPC311658
0.6962 Remote Similarity NPC145113
0.6962 Remote Similarity NPC135121
0.6962 Remote Similarity NPC329761
0.6962 Remote Similarity NPC225648
0.6954 Remote Similarity NPC325479
0.6954 Remote Similarity NPC246079
0.6944 Remote Similarity NPC59827
0.6944 Remote Similarity NPC184933
0.6943 Remote Similarity NPC477217
0.6943 Remote Similarity NPC201244
0.6939 Remote Similarity NPC222466
0.6928 Remote Similarity NPC471053
0.6928 Remote Similarity NPC471052
0.6928 Remote Similarity NPC471051
0.6918 Remote Similarity NPC9373
0.6914 Remote Similarity NPC302235
0.6905 Remote Similarity NPC302597
0.6901 Remote Similarity NPC477462
0.6901 Remote Similarity NPC26108
0.6897 Remote Similarity NPC190663
0.6893 Remote Similarity NPC4910
0.6892 Remote Similarity NPC474479
0.689 Remote Similarity NPC197743
0.689 Remote Similarity NPC297145
0.6886 Remote Similarity NPC63931
0.6883 Remote Similarity NPC127741
0.6879 Remote Similarity NPC97526
0.6879 Remote Similarity NPC119652
0.6871 Remote Similarity NPC244509
0.6867 Remote Similarity NPC241794
0.6863 Remote Similarity NPC141050
0.6855 Remote Similarity NPC128237
0.6855 Remote Similarity NPC83790
0.6853 Remote Similarity NPC470300
0.6853 Remote Similarity NPC239357
0.6852 Remote Similarity NPC5194
0.6852 Remote Similarity NPC261934
0.6852 Remote Similarity NPC56685
0.6848 Remote Similarity NPC244336
0.6842 Remote Similarity NPC257390
0.6831 Remote Similarity NPC477527
0.6824 Remote Similarity NPC475123
0.6824 Remote Similarity NPC475204
0.6815 Remote Similarity NPC139326
0.6813 Remote Similarity NPC240848
0.6813 Remote Similarity NPC189908
0.6805 Remote Similarity NPC141957
0.6805 Remote Similarity NPC328649
0.6803 Remote Similarity NPC160493
0.6803 Remote Similarity NPC97580
0.6795 Remote Similarity NPC307357
0.6795 Remote Similarity NPC46098
0.6795 Remote Similarity NPC268841
0.6795 Remote Similarity NPC476259
0.6792 Remote Similarity NPC81026
0.6778 Remote Similarity NPC477526
0.6774 Remote Similarity NPC68865
0.6747 Remote Similarity NPC469898
0.6744 Remote Similarity NPC306804
0.6743 Remote Similarity NPC39822
0.6743 Remote Similarity NPC153554
0.6739 Remote Similarity NPC45033
0.6733 Remote Similarity NPC65310
0.6731 Remote Similarity NPC77992
0.673 Remote Similarity NPC266741
0.6711 Remote Similarity NPC22746
0.6709 Remote Similarity NPC197682
0.6709 Remote Similarity NPC251439
0.6709 Remote Similarity NPC77905
0.6707 Remote Similarity NPC469901
0.6706 Remote Similarity NPC294516
0.6706 Remote Similarity NPC107938
0.6705 Remote Similarity NPC279871
0.6705 Remote Similarity NPC159767
0.6705 Remote Similarity NPC471165
0.6705 Remote Similarity NPC155506
0.6705 Remote Similarity NPC476227
0.6704 Remote Similarity NPC94862
0.669 Remote Similarity NPC470788
0.6684 Remote Similarity NPC478005
0.6667 Remote Similarity NPC254798
0.6667 Remote Similarity NPC472414
0.6667 Remote Similarity NPC474847
0.6667 Remote Similarity NPC473418
0.6667 Remote Similarity NPC4974
0.6667 Remote Similarity NPC469903
0.6647 Remote Similarity NPC254700

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC471680 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8014 Intermediate Similarity NPD4125 Approved
0.7676 Intermediate Similarity NPD2585 Clinical (unspecified phase)
0.7619 Intermediate Similarity NPD7113 Clinical (unspecified phase)
0.7568 Intermediate Similarity NPD8172 Phase 2
0.7568 Intermediate Similarity NPD8173 Phase 2
0.75 Intermediate Similarity NPD6860 Clinical (unspecified phase)
0.7483 Intermediate Similarity NPD2087 Approved
0.7483 Intermediate Similarity NPD2088 Approved
0.7483 Intermediate Similarity NPD2022 Approved
0.7483 Intermediate Similarity NPD3561 Clinical (unspecified phase)
0.7466 Intermediate Similarity NPD21 Approved
0.7466 Intermediate Similarity NPD2049 Clinical (unspecified phase)
0.7466 Intermediate Similarity NPD2051 Approved
0.7466 Intermediate Similarity NPD2046 Approved
0.7466 Intermediate Similarity NPD2048 Approved
0.7466 Intermediate Similarity NPD2050 Clinical (unspecified phase)
0.7466 Intermediate Similarity NPD2047 Approved
0.7466 Intermediate Similarity NPD2044 Approved
0.7466 Intermediate Similarity NPD2043 Approved
0.7466 Intermediate Similarity NPD2045 Approved
0.7465 Intermediate Similarity NPD2584 Suspended
0.7419 Intermediate Similarity NPD2016 Approved
0.7419 Intermediate Similarity NPD2013 Approved
0.7419 Intermediate Similarity NPD2014 Approved
0.74 Intermediate Similarity NPD4126 Approved
0.7386 Intermediate Similarity NPD5264 Approved
0.7386 Intermediate Similarity NPD5265 Approved
0.7379 Intermediate Similarity NPD5339 Clinical (unspecified phase)
0.7358 Intermediate Similarity NPD2891 Approved
0.732 Intermediate Similarity NPD2436 Approved
0.732 Intermediate Similarity NPD2437 Approved
0.7312 Intermediate Similarity NPD7118 Clinical (unspecified phase)
0.7308 Intermediate Similarity NPD5614 Approved
0.7308 Intermediate Similarity NPD5613 Approved
0.7301 Intermediate Similarity NPD2098 Approved
0.7297 Intermediate Similarity NPD5299 Approved
0.729 Intermediate Similarity NPD6552 Clinical (unspecified phase)
0.7284 Intermediate Similarity NPD2097 Approved
0.7278 Intermediate Similarity NPD7695 Clinical (unspecified phase)
0.7267 Intermediate Similarity NPD7011 Discontinued
0.726 Intermediate Similarity NPD3608 Clinical (unspecified phase)
0.7241 Intermediate Similarity NPD6792 Phase 3
0.7237 Intermediate Similarity NPD3480 Approved
0.7233 Intermediate Similarity NPD4647 Approved
0.7233 Intermediate Similarity NPD4648 Approved
0.7233 Intermediate Similarity NPD4646 Approved
0.7222 Intermediate Similarity NPD4557 Approved
0.7215 Intermediate Similarity NPD7613 Discontinued
0.7215 Intermediate Similarity NPD5229 Approved
0.7215 Intermediate Similarity NPD5230 Approved
0.72 Intermediate Similarity NPD5323 Approved
0.7197 Intermediate Similarity NPD3987 Approved
0.7197 Intermediate Similarity NPD7892 Clinical (unspecified phase)
0.7197 Intermediate Similarity NPD3988 Approved
0.7179 Intermediate Similarity NPD8323 Discontinued
0.7126 Intermediate Similarity NPD4652 Approved
0.7105 Intermediate Similarity NPD4782 Clinical (unspecified phase)
0.7103 Intermediate Similarity NPD3073 Approved
0.7103 Intermediate Similarity NPD3071 Approved
0.7103 Intermediate Similarity NPD3072 Approved
0.7097 Intermediate Similarity NPD5341 Clinical (unspecified phase)
0.7095 Intermediate Similarity NPD3626 Phase 3
0.7095 Intermediate Similarity NPD4177 Approved
0.7095 Intermediate Similarity NPD4175 Approved
0.7092 Intermediate Similarity NPD3123 Discovery
0.7089 Intermediate Similarity NPD1581 Approved
0.7089 Intermediate Similarity NPD1582 Approved
0.7067 Intermediate Similarity NPD1330 Phase 2
0.7067 Intermediate Similarity NPD1329 Clinical (unspecified phase)
0.7066 Intermediate Similarity NPD2889 Approved
0.7066 Intermediate Similarity NPD2890 Approved
0.7066 Intermediate Similarity NPD2888 Approved
0.7066 Intermediate Similarity NPD2017 Approved
0.7047 Intermediate Similarity NPD5263 Approved
0.7034 Intermediate Similarity NPD4762 Approved
0.7034 Intermediate Similarity NPD4761 Approved
0.7013 Intermediate Similarity NPD7728 Clinical (unspecified phase)
0.7007 Intermediate Similarity NPD3125 Approved
0.7007 Intermediate Similarity NPD5367 Discontinued
0.7006 Intermediate Similarity NPD5298 Clinical (unspecified phase)
0.6993 Remote Similarity NPD6073 Approved
0.6974 Remote Similarity NPD4791 Clinical (unspecified phase)
0.6954 Remote Similarity NPD3632 Clinical (unspecified phase)
0.6933 Remote Similarity NPD4676 Approved
0.6918 Remote Similarity NPD4706 Clinical (unspecified phase)
0.6913 Remote Similarity NPD3604 Clinical (unspecified phase)
0.6909 Remote Similarity NPD4567 Approved
0.6909 Remote Similarity NPD4566 Approved
0.6899 Remote Similarity NPD1967 Approved
0.6899 Remote Similarity NPD1968 Approved
0.6899 Remote Similarity NPD6676 Phase 2
0.6897 Remote Similarity NPD2852 Approved
0.6894 Remote Similarity NPD7303 Discontinued
0.6887 Remote Similarity NPD6919 Clinical (unspecified phase)
0.6883 Remote Similarity NPD5725 Approved
0.6883 Remote Similarity NPD6817 Clinical (unspecified phase)
0.6883 Remote Similarity NPD5004 Approved
0.6863 Remote Similarity NPD8416 Discontinued
0.6852 Remote Similarity NPD7131 Phase 3
0.68 Remote Similarity NPD3588 Discontinued
0.6797 Remote Similarity NPD941 Approved
0.679 Remote Similarity NPD5638 Approved
0.6788 Remote Similarity NPD999 Phase 2
0.6776 Remote Similarity NPD4497 Clinical (unspecified phase)
0.6765 Remote Similarity NPD6304 Approved
0.6765 Remote Similarity NPD6303 Approved
0.676 Remote Similarity NPD5852 Approved
0.676 Remote Similarity NPD5851 Approved
0.6752 Remote Similarity NPD6897 Clinical (unspecified phase)
0.6735 Remote Similarity NPD5187 Clinical (unspecified phase)
0.6733 Remote Similarity NPD2160 Approved
0.6733 Remote Similarity NPD2627 Approved
0.6733 Remote Similarity NPD2159 Approved
0.6733 Remote Similarity NPD2626 Approved
0.6733 Remote Similarity NPD2625 Approved
0.6733 Remote Similarity NPD2628 Approved
0.6732 Remote Similarity NPD4619 Approved
0.6732 Remote Similarity NPD4621 Approved
0.6711 Remote Similarity NPD4677 Discontinued
0.6709 Remote Similarity NPD4152 Approved
0.6709 Remote Similarity NPD7720 Phase 2
0.6708 Remote Similarity NPD3510 Approved
0.6708 Remote Similarity NPD3509 Approved
0.6706 Remote Similarity NPD7133 Discontinued
0.6691 Remote Similarity NPD855 Approved
0.6691 Remote Similarity NPD854 Approved
0.6688 Remote Similarity NPD7086 Phase 2
0.6688 Remote Similarity NPD7634 Clinical (unspecified phase)
0.6685 Remote Similarity NPD5077 Approved
0.6685 Remote Similarity NPD5076 Approved
0.6685 Remote Similarity NPD6557 Phase 2
0.6667 Remote Similarity NPD2031 Discontinued
0.6667 Remote Similarity NPD6325 Discontinued
0.6667 Remote Similarity NPD3282 Phase 1
0.6667 Remote Similarity NPD3283 Phase 3
0.6667 Remote Similarity NPD6119 Clinical (unspecified phase)
0.6647 Remote Similarity NPD7965 Phase 2
0.6647 Remote Similarity NPD7964 Clinical (unspecified phase)
0.6646 Remote Similarity NPD7740 Clinical (unspecified phase)
0.6646 Remote Similarity NPD7602 Clinical (unspecified phase)
0.6645 Remote Similarity NPD4153 Approved
0.6645 Remote Similarity NPD3040 Approved
0.6644 Remote Similarity NPD6408 Phase 1
0.6627 Remote Similarity NPD7267 Clinical (unspecified phase)
0.6626 Remote Similarity NPD4432 Discontinued
0.6624 Remote Similarity NPD6294 Approved
0.6624 Remote Similarity NPD6295 Approved
0.6623 Remote Similarity NPD5581 Approved
0.6619 Remote Similarity NPD7130 Phase 3
0.6611 Remote Similarity NPD3919 Approved
0.6606 Remote Similarity NPD8315 Phase 1
0.6603 Remote Similarity NPD8643 Discontinued
0.6603 Remote Similarity NPD3577 Discontinued
0.6601 Remote Similarity NPD7979 Clinical (unspecified phase)
0.66 Remote Similarity NPD5158 Clinical (unspecified phase)
0.66 Remote Similarity NPD5159 Phase 2
0.66 Remote Similarity NPD5157 Phase 1
0.6591 Remote Similarity NPD5484 Approved
0.6591 Remote Similarity NPD5485 Approved
0.659 Remote Similarity NPD5137 Approved
0.6587 Remote Similarity NPD6396 Clinical (unspecified phase)
0.6587 Remote Similarity NPD6395 Phase 2
0.6582 Remote Similarity NPD6865 Phase 2
0.6582 Remote Similarity NPD6864 Phase 2
0.6581 Remote Similarity NPD5747 Discontinued
0.6578 Remote Similarity NPD6253 Approved
0.6577 Remote Similarity NPD4215 Approved
0.6577 Remote Similarity NPD3132 Approved
0.6577 Remote Similarity NPD2610 Approved
0.6577 Remote Similarity NPD4216 Approved
0.6577 Remote Similarity NPD2611 Approved
0.6577 Remote Similarity NPD3131 Approved
0.6577 Remote Similarity NPD4218 Approved
0.6577 Remote Similarity NPD2609 Approved
0.6577 Remote Similarity NPD2612 Approved
0.6577 Remote Similarity NPD4217 Approved
0.6577 Remote Similarity NPD2608 Approved
0.6575 Remote Similarity NPD2855 Approved
0.6575 Remote Similarity NPD3335 Approved
0.6575 Remote Similarity NPD1713 Approved
0.6575 Remote Similarity NPD2854 Approved
0.6575 Remote Similarity NPD2856 Approved
0.6573 Remote Similarity NPD480 Approved
0.6564 Remote Similarity NPD8165 Discontinued
0.6564 Remote Similarity NPD6631 Clinical (unspecified phase)
0.6558 Remote Similarity NPD4794 Discontinued
0.6556 Remote Similarity NPD5577 Clinical (unspecified phase)
0.6556 Remote Similarity NPD5578 Approved
0.6556 Remote Similarity NPD3334 Approved
0.6552 Remote Similarity NPD8124 Phase 3
0.6552 Remote Similarity NPD8126 Clinical (unspecified phase)
0.6549 Remote Similarity NPD2583 Phase 2
0.6543 Remote Similarity NPD6254 Approved
0.6543 Remote Similarity NPD6256 Approved
0.6543 Remote Similarity NPD6255 Approved
0.6538 Remote Similarity NPD5296 Approved
0.6538 Remote Similarity NPD6623 Phase 3
0.6536 Remote Similarity NPD5759 Approved
0.6536 Remote Similarity NPD7828 Discontinued
0.6533 Remote Similarity NPD5108 Clinical (unspecified phase)

Structure

External Identifiers

PubChem CID   73891065
ChEMBL   CHEMBL3104417
ZINC  

Physicochemical Properties

Molecular Weight:  402.11
ALogP:  1.0131
MLogP:  2.89
XLogP:  3.324
# Rotatable Bonds:  8
Polar Surface Area:  123.73
# H-Bond Aceptor:  5
# H-Bond Donor:  2
# Rings:  4
# Heavy Atoms:  27

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
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