Natural Product: NPC470399

Natural Product ID:  NPC470399
Common Name:   Olympicin E
IUPAC Name:   1-[2-[(E)-5-(3,3-dimethyloxiran-2-yl)-3-methylpent-2-enoxy]-4,6-dihydroxyphenyl]-2-methylbutan-1-one
Synonyms:   Olympicin E
Molecular Formula:   C21H30O5
Standard InCHIKey:  WTBGLDKRTSLNSU-UKTHLTGXSA-N
Standard InCHI:  InChI=1S/C21H30O5/c1-6-14(3)20(24)19-16(23)11-15(22)12-17(19)25-10-9-13(2)7-8-18-21(4,5)26-18/h9,11-12,14,18,22-23H,6-8,10H2,1-5H3/b13-9+
Canonical SMILES:  CCC(C(=O)c1c(OC/C=C(/CCC2OC2(C)C)C)cc(cc1O)O)C
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO22037 Hypericum olympicum Species Hypericaceae Eukaryota PMID[21899267]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 64 ug/ml 24261937
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 64 ug/ml 10.1016/S0960-894X(01)80927-6
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 64 ug/ml 10.6019/CHEMBL1201861

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC470399 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9699 High Similarity NPC470398
0.9699 High Similarity NPC187826
0.9699 High Similarity NPC470397
0.9697 High Similarity NPC144027
0.9697 High Similarity NPC236974
0.9552 High Similarity NPC156910
0.9545 High Similarity NPC203817
0.9343 High Similarity NPC140890
0.9343 High Similarity NPC23257
0.9343 High Similarity NPC139554
0.9286 High Similarity NPC131568
0.9286 High Similarity NPC131579
0.9275 High Similarity NPC129853
0.9275 High Similarity NPC188243
0.9275 High Similarity NPC6407
0.9275 High Similarity NPC471587
0.9275 High Similarity NPC284550
0.9275 High Similarity NPC76445
0.9275 High Similarity NPC110228
0.927 High Similarity NPC470668
0.927 High Similarity NPC470671
0.927 High Similarity NPC131130
0.927 High Similarity NPC474487
0.927 High Similarity NPC470669
0.927 High Similarity NPC124269
0.927 High Similarity NPC470672
0.927 High Similarity NPC474504
0.9265 High Similarity NPC240147
0.9265 High Similarity NPC174999
0.9265 High Similarity NPC121243
0.9254 High Similarity NPC10971
0.9254 High Similarity NPC25937
0.9242 High Similarity NPC212379
0.9242 High Similarity NPC69235
0.922 High Similarity NPC285630
0.922 High Similarity NPC127059
0.9214 High Similarity NPC278249
0.9214 High Similarity NPC125894
0.9214 High Similarity NPC316816
0.9214 High Similarity NPC478086
0.9214 High Similarity NPC107177
0.9214 High Similarity NPC223812
0.9214 High Similarity NPC81697
0.9214 High Similarity NPC77794
0.9214 High Similarity NPC214166
0.9214 High Similarity NPC85162
0.9209 High Similarity NPC279650
0.9209 High Similarity NPC258630
0.9209 High Similarity NPC156190
0.9209 High Similarity NPC17170
0.9209 High Similarity NPC96408
0.9209 High Similarity NPC166689
0.9203 High Similarity NPC150648
0.9203 High Similarity NPC310135
0.9203 High Similarity NPC329203
0.9203 High Similarity NPC225153
0.9203 High Similarity NPC274784
0.9203 High Similarity NPC265871
0.9203 High Similarity NPC222342
0.9203 High Similarity NPC20709
0.9197 High Similarity NPC188879
0.9191 High Similarity NPC60667
0.9185 High Similarity NPC223457
0.9179 High Similarity NPC475589
0.9179 High Similarity NPC31872
0.9179 High Similarity NPC473584
0.9155 High Similarity NPC470670
0.9155 High Similarity NPC473133
0.9155 High Similarity NPC47388
0.9149 High Similarity NPC235217
0.9149 High Similarity NPC473015
0.9149 High Similarity NPC473014
0.9149 High Similarity NPC209040
0.9149 High Similarity NPC473013
0.9143 High Similarity NPC220998
0.9143 High Similarity NPC10937
0.9143 High Similarity NPC228504
0.9143 High Similarity NPC32739
0.9143 High Similarity NPC324436
0.9143 High Similarity NPC223500
0.9143 High Similarity NPC296917
0.9143 High Similarity NPC64915
0.9143 High Similarity NPC66515
0.9143 High Similarity NPC182852
0.9143 High Similarity NPC161506
0.9143 High Similarity NPC324134
0.9143 High Similarity NPC107572
0.9143 High Similarity NPC37496
0.9143 High Similarity NPC78
0.9143 High Similarity NPC166482
0.9143 High Similarity NPC76372
0.9143 High Similarity NPC306829
0.9143 High Similarity NPC76338
0.9143 High Similarity NPC177354
0.9143 High Similarity NPC328164
0.9143 High Similarity NPC40833
0.9143 High Similarity NPC166934
0.9143 High Similarity NPC148757
0.9143 High Similarity NPC125855
0.9143 High Similarity NPC167624
0.9143 High Similarity NPC194432
0.9143 High Similarity NPC265040
0.9143 High Similarity NPC1089
0.9143 High Similarity NPC227579
0.9137 High Similarity NPC477272
0.9137 High Similarity NPC16455
0.9137 High Similarity NPC307990
0.913 High Similarity NPC118813
0.9124 High Similarity NPC240593
0.9118 High Similarity NPC125920
0.9104 High Similarity NPC5515
0.9104 High Similarity NPC324482
0.9104 High Similarity NPC270369
0.9091 High Similarity NPC128428
0.9091 High Similarity NPC305518
0.9085 High Similarity NPC88964
0.9085 High Similarity NPC267375
0.9085 High Similarity NPC214774
0.9085 High Similarity NPC54577
0.9085 High Similarity NPC111786
0.9085 High Similarity NPC20488
0.9085 High Similarity NPC83357
0.9085 High Similarity NPC195621
0.9085 High Similarity NPC312973
0.9085 High Similarity NPC67805
0.9085 High Similarity NPC474161
0.9085 High Similarity NPC470647
0.9085 High Similarity NPC246948
0.9085 High Similarity NPC475052
0.9085 High Similarity NPC142405
0.9085 High Similarity NPC476088
0.9085 High Similarity NPC301276
0.9085 High Similarity NPC176229
0.9078 High Similarity NPC149026
0.9078 High Similarity NPC39329
0.9078 High Similarity NPC143896
0.9078 High Similarity NPC257097
0.9078 High Similarity NPC91560
0.9078 High Similarity NPC150408
0.9078 High Similarity NPC75049
0.9078 High Similarity NPC164980
0.9078 High Similarity NPC185276
0.9078 High Similarity NPC169591
0.9078 High Similarity NPC175504
0.9078 High Similarity NPC221432
0.9078 High Similarity NPC68104
0.9078 High Similarity NPC310130
0.9071 High Similarity NPC213322
0.9071 High Similarity NPC4743
0.9071 High Similarity NPC110038
0.9071 High Similarity NPC324386
0.9071 High Similarity NPC282300
0.9071 High Similarity NPC312391
0.9071 High Similarity NPC171870
0.9071 High Similarity NPC248372
0.9065 High Similarity NPC261234
0.9065 High Similarity NPC37206
0.9058 High Similarity NPC107586
0.9058 High Similarity NPC287246
0.9058 High Similarity NPC296490
0.9058 High Similarity NPC295261
0.9058 High Similarity NPC32441
0.9058 High Similarity NPC79943
0.9058 High Similarity NPC243083
0.9058 High Similarity NPC12296
0.9058 High Similarity NPC13768
0.9051 High Similarity NPC84699
0.9051 High Similarity NPC101752
0.9044 High Similarity NPC82225
0.9044 High Similarity NPC18877
0.9044 High Similarity NPC204960
0.9044 High Similarity NPC20560
0.9044 High Similarity NPC294593
0.9044 High Similarity NPC159623
0.9044 High Similarity NPC144051
0.9044 High Similarity NPC93756
0.9044 High Similarity NPC108113
0.9044 High Similarity NPC28753
0.9037 High Similarity NPC27490
0.903 High Similarity NPC84772
0.9028 High Similarity NPC473016
0.9021 High Similarity NPC473077
0.9021 High Similarity NPC472627
0.9021 High Similarity NPC110303
0.9021 High Similarity NPC91902
0.9021 High Similarity NPC283234
0.9021 High Similarity NPC296998
0.9021 High Similarity NPC23728
0.9014 High Similarity NPC271288
0.9014 High Similarity NPC470890
0.9014 High Similarity NPC197252
0.9014 High Similarity NPC236766
0.9014 High Similarity NPC311144
0.9014 High Similarity NPC319752
0.9014 High Similarity NPC224714
0.9014 High Similarity NPC470857
0.9007 High Similarity NPC325346
0.9007 High Similarity NPC226636
0.9007 High Similarity NPC130206
0.9007 High Similarity NPC202981

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC470399 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9058 High Similarity NPD1552 Clinical (unspecified phase)
0.9058 High Similarity NPD1550 Clinical (unspecified phase)
0.8993 High Similarity NPD1549 Phase 2
0.8759 High Similarity NPD1240 Approved
0.875 High Similarity NPD4378 Clinical (unspecified phase)
0.8714 High Similarity NPD2796 Approved
0.8643 High Similarity NPD1510 Phase 2
0.8633 High Similarity NPD1607 Approved
0.8621 High Similarity NPD7410 Clinical (unspecified phase)
0.86 High Similarity NPD8443 Clinical (unspecified phase)
0.8533 High Similarity NPD2393 Clinical (unspecified phase)
0.8467 Intermediate Similarity NPD1934 Approved
0.8462 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.8425 Intermediate Similarity NPD6799 Approved
0.84 Intermediate Similarity NPD7411 Suspended
0.8369 Intermediate Similarity NPD6651 Approved
0.8366 Intermediate Similarity NPD7075 Discontinued
0.8333 Intermediate Similarity NPD4380 Phase 2
0.8289 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.8276 Intermediate Similarity NPD2800 Approved
0.8247 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.8224 Intermediate Similarity NPD6801 Discontinued
0.8214 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.8212 Intermediate Similarity NPD6599 Discontinued
0.8182 Intermediate Similarity NPD3882 Suspended
0.8176 Intermediate Similarity NPD1511 Approved
0.817 Intermediate Similarity NPD2801 Approved
0.817 Intermediate Similarity NPD7819 Suspended
0.8121 Intermediate Similarity NPD2533 Approved
0.8121 Intermediate Similarity NPD2532 Approved
0.8121 Intermediate Similarity NPD2534 Approved
0.8089 Intermediate Similarity NPD6959 Discontinued
0.8069 Intermediate Similarity NPD1551 Phase 2
0.8067 Intermediate Similarity NPD1512 Approved
0.805 Intermediate Similarity NPD6166 Phase 2
0.805 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.805 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.8027 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7973 Intermediate Similarity NPD3750 Approved
0.7973 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7949 Intermediate Similarity NPD7768 Phase 2
0.7945 Intermediate Similarity NPD6099 Approved
0.7945 Intermediate Similarity NPD6100 Approved
0.7937 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7905 Intermediate Similarity NPD2654 Approved
0.7905 Intermediate Similarity NPD1243 Approved
0.7901 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.7899 Intermediate Similarity NPD9717 Approved
0.7898 Intermediate Similarity NPD3749 Approved
0.7895 Intermediate Similarity NPD5403 Approved
0.7885 Intermediate Similarity NPD3817 Phase 2
0.7853 Intermediate Similarity NPD7074 Phase 3
0.784 Intermediate Similarity NPD3818 Discontinued
0.7834 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7799 Intermediate Similarity NPD5494 Approved
0.7791 Intermediate Similarity NPD7054 Approved
0.7778 Intermediate Similarity NPD920 Approved
0.777 Intermediate Similarity NPD2344 Approved
0.7763 Intermediate Similarity NPD5401 Approved
0.7755 Intermediate Similarity NPD7033 Discontinued
0.7755 Intermediate Similarity NPD2799 Discontinued
0.7748 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.7744 Intermediate Similarity NPD7472 Approved
0.7733 Intermediate Similarity NPD4628 Phase 3
0.7733 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.773 Intermediate Similarity NPD1203 Approved
0.7711 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.7703 Intermediate Similarity NPD2935 Discontinued
0.7698 Intermediate Similarity NPD422 Phase 1
0.7698 Intermediate Similarity NPD1547 Clinical (unspecified phase)
0.7697 Intermediate Similarity NPD6797 Phase 2
0.7697 Intermediate Similarity NPD5953 Discontinued
0.7692 Intermediate Similarity NPD6832 Phase 2
0.7692 Intermediate Similarity NPD4908 Phase 1
0.7683 Intermediate Similarity NPD7286 Phase 2
0.7671 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.7671 Intermediate Similarity NPD5124 Phase 1
0.7664 Intermediate Similarity NPD9545 Approved
0.7651 Intermediate Similarity NPD7251 Discontinued
0.7647 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7635 Intermediate Similarity NPD3748 Approved
0.7605 Intermediate Similarity NPD7808 Phase 3
0.7586 Intermediate Similarity NPD3268 Approved
0.7586 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7571 Intermediate Similarity NPD1610 Phase 2
0.7566 Intermediate Similarity NPD2309 Approved
0.7561 Intermediate Similarity NPD7473 Discontinued
0.7551 Intermediate Similarity NPD230 Phase 1
0.7547 Intermediate Similarity NPD5402 Approved
0.7545 Intermediate Similarity NPD6559 Discontinued
0.7536 Intermediate Similarity NPD1548 Phase 1
0.7518 Intermediate Similarity NPD9493 Approved
0.75 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7485 Intermediate Similarity NPD6232 Discontinued
0.7483 Intermediate Similarity NPD943 Approved
0.7483 Intermediate Similarity NPD2797 Approved
0.7468 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7465 Intermediate Similarity NPD4749 Approved
0.7431 Intermediate Similarity NPD2798 Approved
0.7431 Intermediate Similarity NPD1019 Discontinued
0.7426 Intermediate Similarity NPD1241 Discontinued
0.7425 Intermediate Similarity NPD1729 Discontinued
0.7407 Intermediate Similarity NPD919 Approved
0.74 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.7394 Intermediate Similarity NPD2403 Approved
0.7381 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7378 Intermediate Similarity NPD5710 Approved
0.7378 Intermediate Similarity NPD5711 Approved
0.7371 Intermediate Similarity NPD4363 Phase 3
0.7371 Intermediate Similarity NPD4360 Phase 2
0.7365 Intermediate Similarity NPD5844 Phase 1
0.7347 Intermediate Similarity NPD2313 Discontinued
0.7347 Intermediate Similarity NPD1296 Phase 2
0.7347 Intermediate Similarity NPD411 Approved
0.7347 Intermediate Similarity NPD6410 Clinical (unspecified phase)
0.7337 Intermediate Similarity NPD6104 Discontinued
0.7333 Intermediate Similarity NPD3926 Phase 2
0.7317 Intermediate Similarity NPD1247 Approved
0.7315 Intermediate Similarity NPD447 Suspended
0.7308 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7285 Intermediate Similarity NPD4308 Phase 3
0.7273 Intermediate Similarity NPD3972 Approved
0.7273 Intermediate Similarity NPD1608 Approved
0.7244 Intermediate Similarity NPD7390 Discontinued
0.7241 Intermediate Similarity NPD3267 Approved
0.7241 Intermediate Similarity NPD3266 Approved
0.7233 Intermediate Similarity NPD3226 Approved
0.7232 Intermediate Similarity NPD4361 Phase 2
0.7232 Intermediate Similarity NPD4362 Clinical (unspecified phase)
0.723 Intermediate Similarity NPD6798 Discontinued
0.7202 Intermediate Similarity NPD3751 Discontinued
0.72 Intermediate Similarity NPD1899 Clinical (unspecified phase)
0.72 Intermediate Similarity NPD6355 Discontinued
0.7191 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.719 Intermediate Similarity NPD6004 Phase 3
0.719 Intermediate Similarity NPD6006 Clinical (unspecified phase)
0.719 Intermediate Similarity NPD6003 Clinical (unspecified phase)
0.719 Intermediate Similarity NPD6002 Phase 3
0.719 Intermediate Similarity NPD6005 Phase 3
0.7172 Intermediate Similarity NPD3225 Approved
0.7171 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.7169 Intermediate Similarity NPD3787 Discontinued
0.716 Intermediate Similarity NPD1465 Phase 2
0.7143 Intermediate Similarity NPD2424 Discontinued
0.7133 Intermediate Similarity NPD1613 Approved
0.7133 Intermediate Similarity NPD3142 Approved
0.7133 Intermediate Similarity NPD3140 Approved
0.7133 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7115 Intermediate Similarity NPD3887 Approved
0.7113 Intermediate Similarity NPD4196 Clinical (unspecified phase)
0.7107 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7097 Intermediate Similarity NPD1652 Phase 2
0.7089 Intermediate Similarity NPD4661 Approved
0.7089 Intermediate Similarity NPD4662 Approved
0.7086 Intermediate Similarity NPD1933 Approved
0.7078 Intermediate Similarity NPD2346 Discontinued
0.7075 Intermediate Similarity NPD5647 Approved
0.7063 Intermediate Similarity NPD1778 Approved
0.7063 Intermediate Similarity NPD17 Approved
0.7055 Intermediate Similarity NPD5761 Phase 2
0.7055 Intermediate Similarity NPD5760 Phase 2
0.7047 Intermediate Similarity NPD3027 Phase 3
0.7047 Intermediate Similarity NPD4625 Phase 3
0.7035 Intermediate Similarity NPD3658 Clinical (unspecified phase)
0.7027 Intermediate Similarity NPD9494 Approved
0.7027 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7027 Intermediate Similarity NPD2861 Phase 2
0.702 Intermediate Similarity NPD4307 Phase 2
0.7019 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7019 Intermediate Similarity NPD7458 Discontinued
0.7012 Intermediate Similarity NPD4288 Approved
0.7012 Intermediate Similarity NPD2296 Approved
0.7006 Intermediate Similarity NPD2354 Approved
0.7006 Intermediate Similarity NPD7199 Phase 2
0.7 Intermediate Similarity NPD3764 Approved
0.6994 Remote Similarity NPD7577 Discontinued
0.6992 Remote Similarity NPD940 Approved
0.6992 Remote Similarity NPD846 Approved
0.6982 Remote Similarity NPD7784 Clinical (unspecified phase)
0.698 Remote Similarity NPD1008 Clinical (unspecified phase)
0.698 Remote Similarity NPD1529 Clinical (unspecified phase)
0.6968 Remote Similarity NPD2343 Clinical (unspecified phase)
0.6966 Remote Similarity NPD7879 Clinical (unspecified phase)
0.6964 Remote Similarity NPD7229 Phase 3
0.6959 Remote Similarity NPD6917 Clinical (unspecified phase)
0.6954 Remote Similarity NPD6233 Phase 2
0.6949 Remote Similarity NPD4287 Approved
0.6939 Remote Similarity NPD1876 Approved
0.6935 Remote Similarity NPD7584 Approved
0.6934 Remote Similarity NPD74 Approved
0.6934 Remote Similarity NPD9266 Approved
0.6934 Remote Similarity NPD2684 Approved
0.6932 Remote Similarity NPD8434 Phase 2
0.6923 Remote Similarity NPD1894 Discontinued
0.6923 Remote Similarity NPD7184 Clinical (unspecified phase)
0.6918 Remote Similarity NPD7213 Phase 3
0.6918 Remote Similarity NPD6143 Clinical (unspecified phase)
0.6918 Remote Similarity NPD1481 Phase 2
0.6918 Remote Similarity NPD7212 Phase 2
0.6909 Remote Similarity NPD5353 Approved

Structure

External Identifiers

PubChem CID   57379195
ChEMBL   CHEMBL2023362
ZINC  

Physicochemical Properties

Molecular Weight:  362.21
ALogP:  -0.1906
MLogP:  3.22
XLogP:  3.164
# Rotatable Bonds:  16
Polar Surface Area:  79.29
# H-Bond Aceptor:  2
# H-Bond Donor:  2
# Rings:  2
# Heavy Atoms:  26

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs