Natural Product: NPC470669

Natural Product ID:  NPC470669
Common Name:   Empetrikarinen B
IUPAC Name:   1-[5,7-dihydroxy-2-methyl-2-(4-methylpent-3-enyl)chromen-8-yl]-2-methylbutan-1-one
Synonyms:   Empetrikarinen B
Molecular Formula:   C21H28O4
Standard InCHIKey:  UAJYKGPSRWOQCL-UHFFFAOYSA-N
Standard InCHI:  InChI=1S/C21H28O4/c1-6-14(4)19(24)18-17(23)12-16(22)15-9-11-21(5,25-20(15)18)10-7-8-13(2)3/h8-9,11-12,14,22-23H,6-7,10H2,1-5H3
Canonical SMILES:  CCC(C(=O)c1c(O)cc(c2c1OC(C)(CCC=C(C)C)C=C2)O)C
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO33078 hypericum empetrifolium Species Hypericaceae Eukaryota PMID[23030826]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT2 Others Unspecified IC50 = 15000 nM 12852767

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC470669 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC470668
0.9776 High Similarity NPC23257
0.9704 High Similarity NPC471587
0.9701 High Similarity NPC470671
0.9701 High Similarity NPC470672
0.9701 High Similarity NPC474487
0.9701 High Similarity NPC131130
0.9701 High Similarity NPC474504
0.9699 High Similarity NPC174999
0.9632 High Similarity NPC64908
0.9632 High Similarity NPC118840
0.9632 High Similarity NPC156590
0.9632 High Similarity NPC147688
0.9632 High Similarity NPC282300
0.9632 High Similarity NPC205006
0.963 High Similarity NPC55018
0.963 High Similarity NPC220062
0.963 High Similarity NPC96565
0.963 High Similarity NPC216978
0.963 High Similarity NPC303633
0.963 High Similarity NPC301217
0.9624 High Similarity NPC151113
0.9624 High Similarity NPC101752
0.9621 High Similarity NPC108113
0.9621 High Similarity NPC93756
0.9562 High Similarity NPC226636
0.9562 High Similarity NPC62840
0.9562 High Similarity NPC59739
0.9562 High Similarity NPC293852
0.9562 High Similarity NPC11561
0.9562 High Similarity NPC299080
0.9562 High Similarity NPC78803
0.9562 High Similarity NPC214236
0.9562 High Similarity NPC217083
0.9559 High Similarity NPC159275
0.9559 High Similarity NPC305355
0.9559 High Similarity NPC477272
0.9559 High Similarity NPC150522
0.9559 High Similarity NPC235239
0.9559 High Similarity NPC261227
0.9559 High Similarity NPC241100
0.9559 High Similarity NPC475680
0.9559 High Similarity NPC270883
0.9559 High Similarity NPC172986
0.9556 High Similarity NPC201395
0.9552 High Similarity NPC156910
0.9552 High Similarity NPC187826
0.9549 High Similarity NPC125920
0.9545 High Similarity NPC10971
0.9496 High Similarity NPC329678
0.9493 High Similarity NPC219915
0.9493 High Similarity NPC38219
0.9489 High Similarity NPC110969
0.9489 High Similarity NPC103362
0.9485 High Similarity NPC53181
0.9485 High Similarity NPC217186
0.9485 High Similarity NPC18260
0.9485 High Similarity NPC139554
0.9485 High Similarity NPC78913
0.9478 High Similarity NPC60667
0.9424 High Similarity NPC234629
0.9424 High Similarity NPC311741
0.9424 High Similarity NPC131568
0.9424 High Similarity NPC326500
0.9424 High Similarity NPC131579
0.942 High Similarity NPC144499
0.942 High Similarity NPC200694
0.942 High Similarity NPC204469
0.9416 High Similarity NPC69769
0.9407 High Similarity NPC13408
0.9403 High Similarity NPC144027
0.9403 High Similarity NPC236974
0.9398 High Similarity NPC25937
0.9394 High Similarity NPC270369
0.9394 High Similarity NPC5515
0.9357 High Similarity NPC88964
0.9357 High Similarity NPC470647
0.9357 High Similarity NPC312973
0.9357 High Similarity NPC142405
0.9357 High Similarity NPC474161
0.9357 High Similarity NPC54577
0.9357 High Similarity NPC477955
0.9357 High Similarity NPC67805
0.9357 High Similarity NPC475052
0.9357 High Similarity NPC83357
0.9357 High Similarity NPC246948
0.9357 High Similarity NPC301276
0.9357 High Similarity NPC476088
0.9357 High Similarity NPC111786
0.9357 High Similarity NPC20488
0.9357 High Similarity NPC195621
0.9357 High Similarity NPC154217
0.9357 High Similarity NPC124729
0.9357 High Similarity NPC267375
0.9357 High Similarity NPC285630
0.9357 High Similarity NPC176229
0.9357 High Similarity NPC214774
0.9357 High Similarity NPC127059
0.9353 High Similarity NPC212932
0.9353 High Similarity NPC81697
0.9353 High Similarity NPC85162
0.9353 High Similarity NPC478086
0.9353 High Similarity NPC106985
0.9353 High Similarity NPC9117
0.9353 High Similarity NPC11700
0.9353 High Similarity NPC278249
0.9353 High Similarity NPC87609
0.9353 High Similarity NPC166138
0.9353 High Similarity NPC190637
0.9353 High Similarity NPC24821
0.9353 High Similarity NPC188632
0.9353 High Similarity NPC214166
0.9353 High Similarity NPC94794
0.9353 High Similarity NPC18585
0.9353 High Similarity NPC196459
0.9353 High Similarity NPC112791
0.9353 High Similarity NPC316816
0.9353 High Similarity NPC293053
0.9353 High Similarity NPC125894
0.9353 High Similarity NPC107177
0.9353 High Similarity NPC223812
0.9353 High Similarity NPC470296
0.9353 High Similarity NPC77794
0.9348 High Similarity NPC470555
0.9348 High Similarity NPC14871
0.9343 High Similarity NPC473076
0.9343 High Similarity NPC472343
0.9343 High Similarity NPC240305
0.9338 High Similarity NPC317119
0.9338 High Similarity NPC131782
0.9338 High Similarity NPC153979
0.9338 High Similarity NPC474624
0.9338 High Similarity NPC138047
0.9333 High Similarity NPC46869
0.9333 High Similarity NPC13575
0.9323 High Similarity NPC473584
0.9323 High Similarity NPC475589
0.9323 High Similarity NPC31872
0.9291 High Similarity NPC104406
0.9291 High Similarity NPC296998
0.9291 High Similarity NPC166757
0.9291 High Similarity NPC473077
0.9291 High Similarity NPC79469
0.9291 High Similarity NPC97716
0.9291 High Similarity NPC23728
0.9291 High Similarity NPC297886
0.9291 High Similarity NPC283234
0.9291 High Similarity NPC201731
0.9291 High Similarity NPC14001
0.9291 High Similarity NPC24673
0.9291 High Similarity NPC249942
0.9291 High Similarity NPC237635
0.9291 High Similarity NPC110303
0.9286 High Similarity NPC178627
0.9286 High Similarity NPC257236
0.9286 High Similarity NPC273538
0.9286 High Similarity NPC278175
0.9286 High Similarity NPC271288
0.9286 High Similarity NPC469953
0.9286 High Similarity NPC196137
0.9286 High Similarity NPC319752
0.9286 High Similarity NPC209040
0.9286 High Similarity NPC1886
0.9286 High Similarity NPC473013
0.9286 High Similarity NPC473014
0.9286 High Similarity NPC235217
0.9286 High Similarity NPC473015
0.9286 High Similarity NPC216538
0.9286 High Similarity NPC469935
0.9281 High Similarity NPC32739
0.9281 High Similarity NPC161506
0.9281 High Similarity NPC306829
0.9281 High Similarity NPC36181
0.9281 High Similarity NPC227579
0.9281 High Similarity NPC78
0.9281 High Similarity NPC66515
0.9281 High Similarity NPC166482
0.9281 High Similarity NPC64915
0.9281 High Similarity NPC220998
0.9281 High Similarity NPC177354
0.9281 High Similarity NPC125855
0.9281 High Similarity NPC182852
0.9281 High Similarity NPC167624
0.9281 High Similarity NPC228504
0.9281 High Similarity NPC148757
0.9281 High Similarity NPC166934
0.9281 High Similarity NPC473042
0.9281 High Similarity NPC107572
0.9281 High Similarity NPC324134
0.9281 High Similarity NPC37496
0.9281 High Similarity NPC194432
0.9281 High Similarity NPC324436
0.9281 High Similarity NPC223500
0.9281 High Similarity NPC328164
0.9281 High Similarity NPC40833
0.9281 High Similarity NPC76372
0.9281 High Similarity NPC1089
0.9281 High Similarity NPC265040
0.9281 High Similarity NPC76338
0.9281 High Similarity NPC10937

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC470669 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9286 High Similarity NPD7410 Clinical (unspecified phase)
0.9286 High Similarity NPD4378 Clinical (unspecified phase)
0.8921 High Similarity NPD1550 Clinical (unspecified phase)
0.8921 High Similarity NPD1552 Clinical (unspecified phase)
0.8897 High Similarity NPD1240 Approved
0.8857 High Similarity NPD1549 Phase 2
0.8777 High Similarity NPD1510 Phase 2
0.8768 High Similarity NPD1607 Approved
0.8725 High Similarity NPD8443 Clinical (unspecified phase)
0.8714 High Similarity NPD2796 Approved
0.8662 High Similarity NPD2800 Approved
0.8658 High Similarity NPD2393 Clinical (unspecified phase)
0.8649 High Similarity NPD7411 Suspended
0.8633 High Similarity NPD6651 Approved
0.8592 High Similarity NPD970 Clinical (unspecified phase)
0.8581 High Similarity NPD4380 Phase 2
0.8552 High Similarity NPD1511 Approved
0.8487 Intermediate Similarity NPD7075 Discontinued
0.8467 Intermediate Similarity NPD6801 Discontinued
0.8435 Intermediate Similarity NPD1512 Approved
0.8425 Intermediate Similarity NPD6799 Approved
0.8411 Intermediate Similarity NPD7819 Suspended
0.8411 Intermediate Similarity NPD2801 Approved
0.8411 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.8403 Intermediate Similarity NPD1243 Approved
0.8345 Intermediate Similarity NPD3750 Approved
0.8344 Intermediate Similarity NPD1934 Approved
0.8276 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.8252 Intermediate Similarity NPD2799 Discontinued
0.8247 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.8214 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.8212 Intermediate Similarity NPD6599 Discontinued
0.8182 Intermediate Similarity NPD7768 Phase 2
0.8182 Intermediate Similarity NPD3882 Suspended
0.8165 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.8133 Intermediate Similarity NPD920 Approved
0.8129 Intermediate Similarity NPD3749 Approved
0.8125 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.8121 Intermediate Similarity NPD2533 Approved
0.8121 Intermediate Similarity NPD2532 Approved
0.8121 Intermediate Similarity NPD2534 Approved
0.8108 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.8095 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.8089 Intermediate Similarity NPD6959 Discontinued
0.8088 Intermediate Similarity NPD422 Phase 1
0.8069 Intermediate Similarity NPD1551 Phase 2
0.8069 Intermediate Similarity NPD2935 Discontinued
0.8069 Intermediate Similarity NPD6099 Approved
0.8069 Intermediate Similarity NPD6100 Approved
0.8037 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.8029 Intermediate Similarity NPD9717 Approved
0.8014 Intermediate Similarity NPD2344 Approved
0.8 Intermediate Similarity NPD3748 Approved
0.8 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD3817 Phase 2
0.7986 Intermediate Similarity NPD1203 Approved
0.7973 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7958 Intermediate Similarity NPD3268 Approved
0.7958 Intermediate Similarity NPD2313 Discontinued
0.7937 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7937 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7937 Intermediate Similarity NPD6166 Phase 2
0.7917 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.7917 Intermediate Similarity NPD5124 Phase 1
0.7914 Intermediate Similarity NPD5953 Discontinued
0.7911 Intermediate Similarity NPD5494 Approved
0.7901 Intermediate Similarity NPD7286 Phase 2
0.7895 Intermediate Similarity NPD5403 Approved
0.7888 Intermediate Similarity NPD7473 Discontinued
0.7857 Intermediate Similarity NPD2797 Approved
0.784 Intermediate Similarity NPD3818 Discontinued
0.7832 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7812 Intermediate Similarity NPD6232 Discontinued
0.7801 Intermediate Similarity NPD2798 Approved
0.78 Intermediate Similarity NPD2309 Approved
0.7791 Intermediate Similarity NPD7054 Approved
0.7785 Intermediate Similarity NPD2654 Approved
0.7763 Intermediate Similarity NPD5401 Approved
0.7755 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.7755 Intermediate Similarity NPD7033 Discontinued
0.7744 Intermediate Similarity NPD7472 Approved
0.7744 Intermediate Similarity NPD7074 Phase 3
0.7736 Intermediate Similarity NPD919 Approved
0.7724 Intermediate Similarity NPD943 Approved
0.7708 Intermediate Similarity NPD1296 Phase 2
0.7697 Intermediate Similarity NPD6797 Phase 2
0.7692 Intermediate Similarity NPD6832 Phase 2
0.7692 Intermediate Similarity NPD4908 Phase 1
0.7677 Intermediate Similarity NPD3226 Approved
0.7664 Intermediate Similarity NPD1548 Phase 1
0.7651 Intermediate Similarity NPD6559 Discontinued
0.7651 Intermediate Similarity NPD7251 Discontinued
0.764 Intermediate Similarity NPD1247 Approved
0.7635 Intermediate Similarity NPD4308 Phase 3
0.7616 Intermediate Similarity NPD4628 Phase 3
0.761 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7606 Intermediate Similarity NPD3266 Approved
0.7606 Intermediate Similarity NPD3267 Approved
0.7605 Intermediate Similarity NPD7808 Phase 3
0.7589 Intermediate Similarity NPD4749 Approved
0.7582 Intermediate Similarity NPD7390 Discontinued
0.7572 Intermediate Similarity NPD4360 Phase 2
0.7572 Intermediate Similarity NPD4363 Phase 3
0.7571 Intermediate Similarity NPD1547 Clinical (unspecified phase)
0.7571 Intermediate Similarity NPD1610 Phase 2
0.7547 Intermediate Similarity NPD5402 Approved
0.7536 Intermediate Similarity NPD9545 Approved
0.7535 Intermediate Similarity NPD3225 Approved
0.7533 Intermediate Similarity NPD2346 Discontinued
0.753 Intermediate Similarity NPD1729 Discontinued
0.7529 Intermediate Similarity NPD4362 Clinical (unspecified phase)
0.7529 Intermediate Similarity NPD4361 Phase 2
0.7518 Intermediate Similarity NPD1608 Approved
0.7518 Intermediate Similarity NPD9493 Approved
0.7517 Intermediate Similarity NPD4625 Phase 3
0.75 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7485 Intermediate Similarity NPD5710 Approved
0.7485 Intermediate Similarity NPD5711 Approved
0.747 Intermediate Similarity NPD5844 Phase 1
0.7468 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7466 Intermediate Similarity NPD411 Approved
0.7439 Intermediate Similarity NPD3926 Phase 2
0.7432 Intermediate Similarity NPD447 Suspended
0.7426 Intermediate Similarity NPD1241 Discontinued
0.7394 Intermediate Similarity NPD3972 Approved
0.7394 Intermediate Similarity NPD2403 Approved
0.7386 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7365 Intermediate Similarity NPD4307 Phase 2
0.7357 Intermediate Similarity NPD4196 Clinical (unspecified phase)
0.7347 Intermediate Similarity NPD6410 Clinical (unspecified phase)
0.7337 Intermediate Similarity NPD6104 Discontinued
0.7329 Intermediate Similarity NPD4288 Approved
0.7329 Intermediate Similarity NPD1008 Clinical (unspecified phase)
0.7315 Intermediate Similarity NPD230 Phase 1
0.731 Intermediate Similarity NPD1019 Discontinued
0.7305 Intermediate Similarity NPD17 Approved
0.7296 Intermediate Similarity NPD6585 Discontinued
0.7285 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.7267 Intermediate Similarity NPD1465 Phase 2
0.7261 Intermediate Similarity NPD5049 Phase 3
0.7255 Intermediate Similarity NPD2424 Discontinued
0.7241 Intermediate Similarity NPD1164 Approved
0.7233 Intermediate Similarity NPD7458 Discontinued
0.723 Intermediate Similarity NPD3764 Approved
0.7226 Intermediate Similarity NPD2354 Approved
0.7222 Intermediate Similarity NPD2296 Approved
0.7215 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7211 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7203 Intermediate Similarity NPD1201 Approved
0.72 Intermediate Similarity NPD1899 Clinical (unspecified phase)
0.72 Intermediate Similarity NPD1933 Approved
0.7197 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.719 Intermediate Similarity NPD6004 Phase 3
0.719 Intermediate Similarity NPD1471 Phase 3
0.719 Intermediate Similarity NPD6002 Phase 3
0.719 Intermediate Similarity NPD6003 Clinical (unspecified phase)
0.719 Intermediate Similarity NPD2343 Clinical (unspecified phase)
0.719 Intermediate Similarity NPD6005 Phase 3
0.719 Intermediate Similarity NPD6006 Clinical (unspecified phase)
0.7176 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7169 Intermediate Similarity NPD7229 Phase 3
0.7161 Intermediate Similarity NPD7003 Approved
0.7153 Intermediate Similarity NPD1481 Phase 2
0.7143 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD5889 Approved
0.7143 Intermediate Similarity NPD4287 Approved
0.7143 Intermediate Similarity NPD5890 Approved
0.7133 Intermediate Similarity NPD3142 Approved
0.7133 Intermediate Similarity NPD3140 Approved
0.7125 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7124 Intermediate Similarity NPD5405 Approved
0.7124 Intermediate Similarity NPD5406 Approved
0.7124 Intermediate Similarity NPD5404 Approved
0.7124 Intermediate Similarity NPD5408 Approved
0.7123 Intermediate Similarity NPD1470 Approved
0.7121 Intermediate Similarity NPD846 Approved
0.7121 Intermediate Similarity NPD940 Approved
0.712 Intermediate Similarity NPD7584 Approved
0.7114 Intermediate Similarity NPD6798 Discontinued
0.7101 Intermediate Similarity NPD5940 Clinical (unspecified phase)
0.7097 Intermediate Similarity NPD1652 Phase 2
0.7086 Intermediate Similarity NPD6355 Discontinued
0.7083 Intermediate Similarity NPD1535 Discovery
0.7078 Intermediate Similarity NPD2353 Approved
0.7078 Intermediate Similarity NPD2355 Clinical (unspecified phase)
0.7072 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7071 Intermediate Similarity NPD6671 Approved
0.7062 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7059 Intermediate Similarity NPD9266 Approved
0.7059 Intermediate Similarity NPD74 Approved
0.7055 Intermediate Similarity NPD5761 Phase 2
0.7055 Intermediate Similarity NPD5760 Phase 2
0.7055 Intermediate Similarity NPD1876 Approved
0.7041 Intermediate Similarity NPD3446 Phase 1
0.7025 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.702 Intermediate Similarity NPD1613 Approved
0.702 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.702 Intermediate Similarity NPD4060 Phase 1
0.7013 Intermediate Similarity NPD4477 Approved
0.7013 Intermediate Similarity NPD4476 Approved

Structure

External Identifiers

PubChem CID   71461985
ChEMBL   CHEMBL2152492
ZINC  

Physicochemical Properties

Molecular Weight:  344.20
ALogP:  1.4094
MLogP:  3.33
XLogP:  4.069
# Rotatable Bonds:  13
Polar Surface Area:  66.76
# H-Bond Aceptor:  1
# H-Bond Donor:  2
# Rings:  2
# Heavy Atoms:  25

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs