Natural Product: NPC3980

Natural Product ID:  NPC3980
Common Name:   2-[3,4-Dihydroxy-5-(3-Methylbut-2-Enyl)Phenyl]-3,5,7-Trihydroxy-8-(2-Methylbut-3-En-2-Yl)Chromen-4-One
IUPAC Name:   2-[3,4-dihydroxy-5-(3-methylbut-2-enyl)phenyl]-3,5,7-trihydroxy-8-(2-methylbut-3-en-2-yl)chromen-4-one
Synonyms:  
Molecular Formula:   C25H26O7
Standard InCHIKey:  XCKYBRFHABGHMT-UHFFFAOYSA-N
Standard InCHI:  InChI=1S/C25H26O7/c1-6-25(4,5)19-16(27)11-15(26)18-21(30)22(31)23(32-24(18)19)14-9-13(8-7-12(2)3)20(29)17(28)10-14/h6-7,9-11,26-29,31H,1,8H2,2-5H3
Canonical SMILES:  C=CC(c1c(O)cc(c2c1oc(c1cc(O)c(c(c1)CC=C(C)C)O)c(c2=O)O)O)(C)C
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO5495 Broussonetia papyrifera Species Moraceae Eukaryota PMID[12419367]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT178 Individual Protein Protein-tyrosine phosphatase 1B Homo sapiens IC50 = 4300 nM 20421396

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC3980 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9797 High Similarity NPC63187
0.9797 High Similarity NPC37684
0.9797 High Similarity NPC157784
0.973 High Similarity NPC59162
0.973 High Similarity NPC304295
0.973 High Similarity NPC205046
0.9673 High Similarity NPC78332
0.9669 High Similarity NPC273843
0.9667 High Similarity NPC133392
0.9662 High Similarity NPC3825
0.9662 High Similarity NPC88804
0.9608 High Similarity NPC187354
0.9605 High Similarity NPC197856
0.9605 High Similarity NPC46736
0.9603 High Similarity NPC475799
0.9603 High Similarity NPC13779
0.9542 High Similarity NPC297212
0.9542 High Similarity NPC476283
0.9542 High Similarity NPC476280
0.9539 High Similarity NPC237418
0.9477 High Similarity NPC185258
0.9477 High Similarity NPC172770
0.947 High Similarity NPC170492
0.9467 High Similarity NPC154345
0.9463 High Similarity NPC87125
0.9463 High Similarity NPC270465
0.9419 High Similarity NPC206605
0.9416 High Similarity NPC45146
0.9416 High Similarity NPC235018
0.9412 High Similarity NPC187745
0.9412 High Similarity NPC161960
0.9412 High Similarity NPC304008
0.9412 High Similarity NPC79053
0.9408 High Similarity NPC80534
0.9408 High Similarity NPC56786
0.9404 High Similarity NPC471982
0.9404 High Similarity NPC249570
0.94 High Similarity NPC286342
0.94 High Similarity NPC188871
0.94 High Similarity NPC149127
0.9392 High Similarity NPC179271
0.9392 High Similarity NPC20791
0.9367 High Similarity NPC165456
0.9359 High Similarity NPC12461
0.9359 High Similarity NPC476295
0.9355 High Similarity NPC32694
0.9355 High Similarity NPC472275
0.9355 High Similarity NPC234644
0.9351 High Similarity NPC22192
0.9351 High Similarity NPC235448
0.9346 High Similarity NPC115853
0.9346 High Similarity NPC276444
0.9346 High Similarity NPC471985
0.9342 High Similarity NPC78326
0.9342 High Similarity NPC476631
0.9342 High Similarity NPC213896
0.9342 High Similarity NPC270620
0.9342 High Similarity NPC189130
0.9342 High Similarity NPC192083
0.9342 High Similarity NPC236223
0.9342 High Similarity NPC179126
0.9338 High Similarity NPC54394
0.9338 High Similarity NPC252933
0.9338 High Similarity NPC260895
0.9338 High Similarity NPC125062
0.9338 High Similarity NPC200740
0.9329 High Similarity NPC74881
0.9329 High Similarity NPC108406
0.9329 High Similarity NPC51443
0.9304 High Similarity NPC476306
0.929 High Similarity NPC28241
0.929 High Similarity NPC80375
0.929 High Similarity NPC282009
0.929 High Similarity NPC287328
0.929 High Similarity NPC246478
0.929 High Similarity NPC188433
0.9286 High Similarity NPC476630
0.9286 High Similarity NPC180011
0.9286 High Similarity NPC219867
0.9286 High Similarity NPC218871
0.9281 High Similarity NPC321779
0.9281 High Similarity NPC472280
0.9281 High Similarity NPC234255
0.9276 High Similarity NPC237994
0.9276 High Similarity NPC106976
0.9276 High Similarity NPC55205
0.9276 High Similarity NPC82325
0.9276 High Similarity NPC279989
0.9272 High Similarity NPC50728
0.9272 High Similarity NPC166753
0.9262 High Similarity NPC169749
0.9257 High Similarity NPC9117
0.9257 High Similarity NPC212932
0.9257 High Similarity NPC11700
0.9257 High Similarity NPC24821
0.9257 High Similarity NPC279121
0.9257 High Similarity NPC293053
0.9257 High Similarity NPC190637
0.9236 High Similarity NPC472625
0.9236 High Similarity NPC303460
0.9236 High Similarity NPC306321
0.9236 High Similarity NPC220313
0.9231 High Similarity NPC57715
0.9231 High Similarity NPC471499
0.9231 High Similarity NPC289771
0.9226 High Similarity NPC210459
0.9226 High Similarity NPC280680
0.9221 High Similarity NPC291878
0.9221 High Similarity NPC142339
0.9221 High Similarity NPC170026
0.9221 High Similarity NPC49824
0.9221 High Similarity NPC471500
0.9221 High Similarity NPC195796
0.9221 High Similarity NPC472455
0.9221 High Similarity NPC265511
0.9221 High Similarity NPC282307
0.9221 High Similarity NPC278778
0.9221 High Similarity NPC191146
0.9221 High Similarity NPC68093
0.9221 High Similarity NPC35038
0.9216 High Similarity NPC227337
0.9216 High Similarity NPC58382
0.9216 High Similarity NPC162351
0.9216 High Similarity NPC70433
0.9216 High Similarity NPC49402
0.9216 High Similarity NPC273462
0.9216 High Similarity NPC74924
0.9216 High Similarity NPC298692
0.9216 High Similarity NPC33051
0.9211 High Similarity NPC236769
0.9211 High Similarity NPC133953
0.9211 High Similarity NPC28274
0.9211 High Similarity NPC50403
0.9205 High Similarity NPC223579
0.9205 High Similarity NPC195351
0.9205 High Similarity NPC177298
0.9205 High Similarity NPC287101
0.9205 High Similarity NPC48479
0.9205 High Similarity NPC38545
0.9205 High Similarity NPC269420
0.9205 High Similarity NPC183950
0.9205 High Similarity NPC171916
0.9205 High Similarity NPC159103
0.9205 High Similarity NPC137062
0.9205 High Similarity NPC52005
0.9195 High Similarity NPC216538
0.9195 High Similarity NPC326500
0.9195 High Similarity NPC70136
0.9195 High Similarity NPC273538
0.9189 High Similarity NPC200694
0.9189 High Similarity NPC473042
0.9189 High Similarity NPC175013
0.9177 High Similarity NPC472277
0.9177 High Similarity NPC62261
0.9172 High Similarity NPC211107
0.9172 High Similarity NPC474162
0.9172 High Similarity NPC474150
0.9172 High Similarity NPC470694
0.9172 High Similarity NPC329760
0.9167 High Similarity NPC471973
0.9167 High Similarity NPC470183
0.9167 High Similarity NPC192686
0.9167 High Similarity NPC476980
0.9167 High Similarity NPC36217
0.9167 High Similarity NPC328102
0.9167 High Similarity NPC119209
0.9167 High Similarity NPC321399
0.9167 High Similarity NPC470326
0.9167 High Similarity NPC204290
0.9167 High Similarity NPC118256
0.9161 High Similarity NPC471479
0.9161 High Similarity NPC471515
0.9161 High Similarity NPC224137
0.9161 High Similarity NPC93376
0.9161 High Similarity NPC474681
0.9161 High Similarity NPC218313
0.9161 High Similarity NPC189179
0.9161 High Similarity NPC67876
0.9161 High Similarity NPC136674
0.9161 High Similarity NPC471209
0.9161 High Similarity NPC291508
0.9161 High Similarity NPC236796
0.9161 High Similarity NPC474055
0.9161 High Similarity NPC227192
0.9161 High Similarity NPC203891
0.9161 High Similarity NPC101830
0.9161 High Similarity NPC27337
0.9161 High Similarity NPC75215
0.9161 High Similarity NPC472598
0.9161 High Similarity NPC110070
0.9161 High Similarity NPC78225
0.9156 High Similarity NPC57674
0.9156 High Similarity NPC67396
0.9156 High Similarity NPC471116
0.9156 High Similarity NPC477503
0.9156 High Similarity NPC201451
0.9156 High Similarity NPC26227
0.9156 High Similarity NPC200761
0.9156 High Similarity NPC44079
0.9156 High Similarity NPC214138

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC3980 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9392 High Similarity NPD1512 Approved
0.9342 High Similarity NPD2393 Clinical (unspecified phase)
0.9257 High Similarity NPD1511 Approved
0.9195 High Similarity NPD4378 Clinical (unspecified phase)
0.9091 High Similarity NPD2801 Approved
0.9026 High Similarity NPD1934 Approved
0.8854 High Similarity NPD3882 Suspended
0.882 High Similarity NPD6168 Clinical (unspecified phase)
0.882 High Similarity NPD6167 Clinical (unspecified phase)
0.882 High Similarity NPD6166 Phase 2
0.879 High Similarity NPD3817 Phase 2
0.8571 High Similarity NPD7410 Clinical (unspecified phase)
0.8562 High Similarity NPD7075 Discontinued
0.8554 High Similarity NPD6797 Phase 2
0.8535 High Similarity NPD4380 Phase 2
0.8503 High Similarity NPD7251 Discontinued
0.8491 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.8485 Intermediate Similarity NPD3818 Discontinued
0.8434 Intermediate Similarity NPD7054 Approved
0.8428 Intermediate Similarity NPD6801 Discontinued
0.8418 Intermediate Similarity NPD6599 Discontinued
0.8383 Intermediate Similarity NPD7472 Approved
0.8383 Intermediate Similarity NPD7074 Phase 3
0.8375 Intermediate Similarity NPD7819 Suspended
0.8366 Intermediate Similarity NPD2800 Approved
0.8355 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.8355 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.8354 Intermediate Similarity NPD6232 Discontinued
0.8344 Intermediate Similarity NPD5494 Approved
0.8344 Intermediate Similarity NPD1510 Phase 2
0.8343 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.8343 Intermediate Similarity NPD7808 Phase 3
0.8323 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.8323 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.8313 Intermediate Similarity NPD7473 Discontinued
0.8301 Intermediate Similarity NPD1549 Phase 2
0.8289 Intermediate Similarity NPD2796 Approved
0.8272 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.8269 Intermediate Similarity NPD6799 Approved
0.8221 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.82 Intermediate Similarity NPD943 Approved
0.82 Intermediate Similarity NPD1240 Approved
0.8182 Intermediate Similarity NPD6959 Discontinued
0.8137 Intermediate Similarity NPD7411 Suspended
0.8092 Intermediate Similarity NPD1607 Approved
0.8077 Intermediate Similarity NPD3750 Approved
0.8072 Intermediate Similarity NPD1247 Approved
0.8065 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.8061 Intermediate Similarity NPD919 Approved
0.8037 Intermediate Similarity NPD1465 Phase 2
0.8012 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD5844 Phase 1
0.7988 Intermediate Similarity NPD5402 Approved
0.7987 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.7976 Intermediate Similarity NPD3926 Phase 2
0.7939 Intermediate Similarity NPD7768 Phase 2
0.7935 Intermediate Similarity NPD2935 Discontinued
0.7935 Intermediate Similarity NPD6099 Approved
0.7935 Intermediate Similarity NPD6100 Approved
0.7933 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7929 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7888 Intermediate Similarity NPD5403 Approved
0.7875 Intermediate Similarity NPD2532 Approved
0.7875 Intermediate Similarity NPD2534 Approved
0.7875 Intermediate Similarity NPD2533 Approved
0.7867 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7861 Intermediate Similarity NPD6559 Discontinued
0.7857 Intermediate Similarity NPD6651 Approved
0.7791 Intermediate Similarity NPD3226 Approved
0.7785 Intermediate Similarity NPD1243 Approved
0.7785 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7784 Intermediate Similarity NPD3749 Approved
0.7764 Intermediate Similarity NPD5401 Approved
0.7756 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.7756 Intermediate Similarity NPD2799 Discontinued
0.7756 Intermediate Similarity NPD3748 Approved
0.7736 Intermediate Similarity NPD4628 Phase 3
0.7736 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7727 Intermediate Similarity NPD1613 Approved
0.7727 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7714 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.7712 Intermediate Similarity NPD2313 Discontinued
0.7702 Intermediate Similarity NPD7390 Discontinued
0.7677 Intermediate Similarity NPD230 Phase 1
0.7669 Intermediate Similarity NPD920 Approved
0.7658 Intermediate Similarity NPD2346 Discontinued
0.7658 Intermediate Similarity NPD2344 Approved
0.7597 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7595 Intermediate Similarity NPD1551 Phase 2
0.7564 Intermediate Similarity NPD447 Suspended
0.7561 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7558 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7546 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7532 Intermediate Similarity NPD3027 Phase 3
0.7531 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD5953 Discontinued
0.7486 Intermediate Similarity NPD7286 Phase 2
0.7484 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7484 Intermediate Similarity NPD3268 Approved
0.7473 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7473 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7469 Intermediate Similarity NPD2309 Approved
0.7459 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7451 Intermediate Similarity NPD2798 Approved
0.7444 Intermediate Similarity NPD8434 Phase 2
0.7442 Intermediate Similarity NPD7199 Phase 2
0.7429 Intermediate Similarity NPD3751 Discontinued
0.7427 Intermediate Similarity NPD6234 Discontinued
0.7419 Intermediate Similarity NPD4625 Phase 3
0.7407 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7405 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7399 Intermediate Similarity NPD3787 Discontinued
0.7391 Intermediate Similarity NPD4360 Phase 2
0.7391 Intermediate Similarity NPD4363 Phase 3
0.7389 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7386 Intermediate Similarity NPD1203 Approved
0.7386 Intermediate Similarity NPD2797 Approved
0.7378 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7362 Intermediate Similarity NPD6190 Approved
0.7355 Intermediate Similarity NPD4908 Phase 1
0.7333 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.7333 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7308 Intermediate Similarity NPD7095 Approved
0.7303 Intermediate Similarity NPD1608 Approved
0.7299 Intermediate Similarity NPD5710 Approved
0.7299 Intermediate Similarity NPD5711 Approved
0.7278 Intermediate Similarity NPD4060 Phase 1
0.7262 Intermediate Similarity NPD7458 Discontinued
0.7258 Intermediate Similarity NPD4362 Clinical (unspecified phase)
0.7258 Intermediate Similarity NPD4361 Phase 2
0.7255 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.7237 Intermediate Similarity NPD1201 Approved
0.7237 Intermediate Similarity NPD1610 Phase 2
0.7237 Intermediate Similarity NPD422 Phase 1
0.7235 Intermediate Similarity NPD37 Approved
0.7233 Intermediate Similarity NPD1933 Approved
0.7222 Intermediate Similarity NPD1471 Phase 3
0.7216 Intermediate Similarity NPD2403 Approved
0.7209 Intermediate Similarity NPD4967 Phase 2
0.7209 Intermediate Similarity NPD4965 Approved
0.7209 Intermediate Similarity NPD4966 Approved
0.7205 Intermediate Similarity NPD7033 Discontinued
0.7205 Intermediate Similarity NPD4308 Phase 3
0.7202 Intermediate Similarity NPD1653 Approved
0.72 Intermediate Similarity NPD1548 Phase 1
0.72 Intermediate Similarity NPD7229 Phase 3
0.7196 Intermediate Similarity NPD6778 Approved
0.7196 Intermediate Similarity NPD6779 Approved
0.7196 Intermediate Similarity NPD6776 Approved
0.7196 Intermediate Similarity NPD6777 Approved
0.7196 Intermediate Similarity NPD6782 Approved
0.7196 Intermediate Similarity NPD6780 Approved
0.7196 Intermediate Similarity NPD6781 Approved
0.719 Intermediate Similarity NPD9717 Approved
0.719 Intermediate Similarity NPD9269 Phase 2
0.719 Intermediate Similarity NPD3972 Approved
0.7182 Intermediate Similarity NPD8313 Approved
0.7182 Intermediate Similarity NPD8312 Approved
0.7179 Intermediate Similarity NPD9494 Approved
0.7161 Intermediate Similarity NPD3266 Approved
0.7161 Intermediate Similarity NPD1470 Approved
0.7161 Intermediate Similarity NPD3267 Approved
0.716 Intermediate Similarity NPD5405 Approved
0.716 Intermediate Similarity NPD5406 Approved
0.716 Intermediate Similarity NPD5404 Approved
0.716 Intermediate Similarity NPD5408 Approved
0.7158 Intermediate Similarity NPD8150 Discontinued
0.7152 Intermediate Similarity NPD6410 Clinical (unspecified phase)
0.7152 Intermediate Similarity NPD6798 Discontinued
0.7151 Intermediate Similarity NPD4288 Approved
0.7143 Intermediate Similarity NPD4749 Approved
0.7135 Intermediate Similarity NPD7228 Approved
0.7134 Intermediate Similarity NPD6832 Phase 2
0.7125 Intermediate Similarity NPD1899 Clinical (unspecified phase)
0.7125 Intermediate Similarity NPD6355 Discontinued
0.7124 Intermediate Similarity NPD1547 Clinical (unspecified phase)
0.7108 Intermediate Similarity NPD3300 Phase 2
0.7105 Intermediate Similarity NPD17 Approved
0.7097 Intermediate Similarity NPD3225 Approved
0.7091 Intermediate Similarity NPD8166 Discontinued
0.7091 Intermediate Similarity NPD7003 Approved
0.7083 Intermediate Similarity NPD7435 Discontinued
0.7083 Intermediate Similarity NPD5049 Phase 3
0.7076 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7072 Intermediate Similarity NPD7685 Pre-registration
0.7062 Intermediate Similarity NPD5242 Approved
0.7062 Intermediate Similarity NPD7584 Approved
0.7059 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7048 Intermediate Similarity NPD2354 Approved
0.7044 Intermediate Similarity NPD411 Approved
0.703 Intermediate Similarity NPD2654 Approved
0.7019 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.7019 Intermediate Similarity NPD5124 Phase 1
0.7 Intermediate Similarity NPD6233 Phase 2
0.6995 Remote Similarity NPD7696 Phase 3
0.6995 Remote Similarity NPD7698 Approved
0.6995 Remote Similarity NPD7697 Approved
0.6994 Remote Similarity NPD5761 Phase 2
0.6994 Remote Similarity NPD5760 Phase 2
0.699 Remote Similarity NPD8151 Discontinued

Structure

External Identifiers

PubChem CID   10048747
ChEMBL   CHEMBL323712
ZINC  

Physicochemical Properties

Molecular Weight:  438.17
ALogP:  0.6979
MLogP:  3.44
XLogP:  4.651
# Rotatable Bonds:  14
Polar Surface Area:  127.45
# H-Bond Aceptor:  2
# H-Bond Donor:  5
# Rings:  3
# Heavy Atoms:  32

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs