Natural Product: NPC293658

Natural Product ID:  NPC293658
Common Name:   Paniculatumoside B
IUPAC Name:  
Synonyms:   paniculatumoside B
Molecular Formula:   C28H40O9
Standard InCHIKey:  RIZURMSYPNFAAV-QBJYZOITSA-N
Standard InCHI:  InChI=1S/C28H40O9/c1-14-24(29)20(32-4)12-22(34-14)35-16-9-10-27(2)15(11-16)5-6-17-19(27)8-7-18-23-21(36-25(17)30)13-33-28(23,3)37-26(18)31/h5,7,14,16-17,19-24,26,29,31H,6,8-13H2,1-4H3/b18-7+/t14-,16+,17-,19+,20-,21+,22+,23-,24-,26-,27+,28-/m1/s1
Canonical SMILES:  CO[C@@H]1C[C@H](O[C@H]2CC[C@]3(C(=CC[C@@H]4[C@@H]3C/C=C3/[C@H](O)O[C@@]5([C@H]3[C@@H](OC4=O)CO5)C)C2)C)O[C@@H]([C@H]1O)C
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO31390 Cynanchum paniculatum Species Apocynaceae Eukaryota roots PMID[14738392]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 148.6 ug/ml 22676269

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC293658 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC474410
0.8981 High Similarity NPC127153
0.8879 High Similarity NPC293512
0.885 High Similarity NPC122971
0.8684 High Similarity NPC477071
0.8661 High Similarity NPC181145
0.8636 High Similarity NPC119550
0.8636 High Similarity NPC83005
0.8624 High Similarity NPC177524
0.8624 High Similarity NPC135015
0.8624 High Similarity NPC48548
0.8624 High Similarity NPC217921
0.8624 High Similarity NPC392
0.8624 High Similarity NPC128795
0.8624 High Similarity NPC219900
0.8584 High Similarity NPC189126
0.8571 High Similarity NPC75167
0.8571 High Similarity NPC311592
0.8545 High Similarity NPC40728
0.8545 High Similarity NPC316974
0.8532 High Similarity NPC88013
0.8532 High Similarity NPC125423
0.8532 High Similarity NPC184512
0.8509 High Similarity NPC473968
0.8496 Intermediate Similarity NPC472274
0.8482 Intermediate Similarity NPC174836
0.8462 Intermediate Similarity NPC473231
0.8455 Intermediate Similarity NPC295389
0.8455 Intermediate Similarity NPC311223
0.844 Intermediate Similarity NPC127609
0.844 Intermediate Similarity NPC252296
0.8426 Intermediate Similarity NPC127933
0.8426 Intermediate Similarity NPC475889
0.8426 Intermediate Similarity NPC7644
0.8426 Intermediate Similarity NPC7613
0.8407 Intermediate Similarity NPC264153
0.839 Intermediate Similarity NPC41129
0.8378 Intermediate Similarity NPC143706
0.8378 Intermediate Similarity NPC118225
0.8378 Intermediate Similarity NPC472534
0.8376 Intermediate Similarity NPC476204
0.8376 Intermediate Similarity NPC473250
0.8376 Intermediate Similarity NPC170084
0.8364 Intermediate Similarity NPC472390
0.8349 Intermediate Similarity NPC470768
0.8349 Intermediate Similarity NPC470321
0.8349 Intermediate Similarity NPC264867
0.8349 Intermediate Similarity NPC473207
0.8349 Intermediate Similarity NPC81567
0.8349 Intermediate Similarity NPC201880
0.8348 Intermediate Similarity NPC474483
0.8348 Intermediate Similarity NPC473405
0.8333 Intermediate Similarity NPC238397
0.8333 Intermediate Similarity NPC220293
0.8333 Intermediate Similarity NPC470919
0.8333 Intermediate Similarity NPC471363
0.8333 Intermediate Similarity NPC469877
0.8319 Intermediate Similarity NPC302146
0.8319 Intermediate Similarity NPC318135
0.8304 Intermediate Similarity NPC235014
0.8304 Intermediate Similarity NPC129340
0.8304 Intermediate Similarity NPC101450
0.8304 Intermediate Similarity NPC274507
0.8302 Intermediate Similarity NPC239547
0.8302 Intermediate Similarity NPC125551
0.8302 Intermediate Similarity NPC155319
0.8302 Intermediate Similarity NPC309503
0.8302 Intermediate Similarity NPC91197
0.8302 Intermediate Similarity NPC96597
0.8291 Intermediate Similarity NPC48692
0.8291 Intermediate Similarity NPC470312
0.8276 Intermediate Similarity NPC45475
0.8276 Intermediate Similarity NPC473828
0.8276 Intermediate Similarity NPC471548
0.8276 Intermediate Similarity NPC473617
0.8273 Intermediate Similarity NPC239961
0.8261 Intermediate Similarity NPC474046
0.8261 Intermediate Similarity NPC259306
0.8261 Intermediate Similarity NPC470628
0.8257 Intermediate Similarity NPC134270
0.8246 Intermediate Similarity NPC251309
0.8241 Intermediate Similarity NPC280991
0.823 Intermediate Similarity NPC30397
0.823 Intermediate Similarity NPC235841
0.823 Intermediate Similarity NPC211798
0.823 Intermediate Similarity NPC473481
0.823 Intermediate Similarity NPC108748
0.823 Intermediate Similarity NPC263827
0.823 Intermediate Similarity NPC297208
0.823 Intermediate Similarity NPC250481
0.823 Intermediate Similarity NPC191763
0.823 Intermediate Similarity NPC285410
0.822 Intermediate Similarity NPC202051
0.8214 Intermediate Similarity NPC237503
0.8214 Intermediate Similarity NPC306746
0.8214 Intermediate Similarity NPC204407
0.8214 Intermediate Similarity NPC167383
0.8214 Intermediate Similarity NPC265655
0.8214 Intermediate Similarity NPC206618
0.8214 Intermediate Similarity NPC57362
0.8214 Intermediate Similarity NPC137917
0.8205 Intermediate Similarity NPC475834
0.8205 Intermediate Similarity NPC474179
0.8205 Intermediate Similarity NPC475775
0.8205 Intermediate Similarity NPC476529
0.819 Intermediate Similarity NPC471547
0.8182 Intermediate Similarity NPC470780
0.8182 Intermediate Similarity NPC222161
0.8182 Intermediate Similarity NPC121566
0.8182 Intermediate Similarity NPC100955
0.8174 Intermediate Similarity NPC473882
0.8165 Intermediate Similarity NPC201191
0.8158 Intermediate Similarity NPC470025
0.8158 Intermediate Similarity NPC233003
0.8158 Intermediate Similarity NPC128925
0.8158 Intermediate Similarity NPC46388
0.8158 Intermediate Similarity NPC321272
0.8158 Intermediate Similarity NPC116794
0.8158 Intermediate Similarity NPC328074
0.8158 Intermediate Similarity NPC37739
0.8158 Intermediate Similarity NPC317460
0.8158 Intermediate Similarity NPC256798
0.8142 Intermediate Similarity NPC68419
0.8142 Intermediate Similarity NPC7870
0.8142 Intermediate Similarity NPC476882
0.8142 Intermediate Similarity NPC476883
0.8142 Intermediate Similarity NPC476884
0.8142 Intermediate Similarity NPC102914
0.8142 Intermediate Similarity NPC108709
0.8142 Intermediate Similarity NPC476880
0.8142 Intermediate Similarity NPC110139
0.8142 Intermediate Similarity NPC164194
0.8142 Intermediate Similarity NPC56713
0.8142 Intermediate Similarity NPC136877
0.8142 Intermediate Similarity NPC78046
0.8142 Intermediate Similarity NPC52241
0.8142 Intermediate Similarity NPC279554
0.8142 Intermediate Similarity NPC270667
0.8142 Intermediate Similarity NPC476886
0.8142 Intermediate Similarity NPC29069
0.8142 Intermediate Similarity NPC476881
0.8142 Intermediate Similarity NPC475296
0.8142 Intermediate Similarity NPC59804
0.8142 Intermediate Similarity NPC174679
0.8142 Intermediate Similarity NPC474589
0.8142 Intermediate Similarity NPC475317
0.8142 Intermediate Similarity NPC75747
0.8142 Intermediate Similarity NPC90856
0.8142 Intermediate Similarity NPC199457
0.8142 Intermediate Similarity NPC154856
0.8142 Intermediate Similarity NPC220984
0.8142 Intermediate Similarity NPC269095
0.8142 Intermediate Similarity NPC476887
0.8142 Intermediate Similarity NPC127056
0.8142 Intermediate Similarity NPC476885
0.8136 Intermediate Similarity NPC107338
0.8136 Intermediate Similarity NPC109607
0.8136 Intermediate Similarity NPC476150
0.8136 Intermediate Similarity NPC476127
0.8131 Intermediate Similarity NPC98112
0.8125 Intermediate Similarity NPC476123
0.8125 Intermediate Similarity NPC284807
0.8125 Intermediate Similarity NPC473288
0.8125 Intermediate Similarity NPC28198
0.8125 Intermediate Similarity NPC38948
0.8125 Intermediate Similarity NPC177246
0.8125 Intermediate Similarity NPC195708
0.812 Intermediate Similarity NPC234522
0.812 Intermediate Similarity NPC475403
0.812 Intermediate Similarity NPC475913
0.812 Intermediate Similarity NPC291564
0.812 Intermediate Similarity NPC160888
0.8115 Intermediate Similarity NPC311534
0.8113 Intermediate Similarity NPC230347
0.8113 Intermediate Similarity NPC275310
0.8113 Intermediate Similarity NPC286612
0.8108 Intermediate Similarity NPC162033
0.8108 Intermediate Similarity NPC95243
0.8108 Intermediate Similarity NPC82251
0.8108 Intermediate Similarity NPC470767
0.8108 Intermediate Similarity NPC63023
0.8108 Intermediate Similarity NPC210178
0.8108 Intermediate Similarity NPC470763
0.8103 Intermediate Similarity NPC207637
0.8091 Intermediate Similarity NPC69171
0.8091 Intermediate Similarity NPC474165
0.8087 Intermediate Similarity NPC138334
0.8087 Intermediate Similarity NPC269315
0.8087 Intermediate Similarity NPC124296
0.8087 Intermediate Similarity NPC157441
0.8087 Intermediate Similarity NPC470027
0.8087 Intermediate Similarity NPC47063
0.8087 Intermediate Similarity NPC189884
0.8087 Intermediate Similarity NPC258885
0.8087 Intermediate Similarity NPC271138
0.8087 Intermediate Similarity NPC204458
0.8083 Intermediate Similarity NPC27363
0.8073 Intermediate Similarity NPC198992
0.8073 Intermediate Similarity NPC154127
0.807 Intermediate Similarity NPC17791

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC293658 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8624 High Similarity NPD6686 Approved
0.7951 Intermediate Similarity NPD7507 Approved
0.7876 Intermediate Similarity NPD6412 Phase 2
0.7778 Intermediate Similarity NPD8133 Approved
0.7769 Intermediate Similarity NPD8513 Phase 3
0.7769 Intermediate Similarity NPD8515 Approved
0.7769 Intermediate Similarity NPD8517 Approved
0.7769 Intermediate Similarity NPD8516 Approved
0.776 Intermediate Similarity NPD7319 Approved
0.7739 Intermediate Similarity NPD8132 Clinical (unspecified phase)
0.7667 Intermediate Similarity NPD7327 Approved
0.7667 Intermediate Similarity NPD7328 Approved
0.7623 Intermediate Similarity NPD8033 Approved
0.7607 Intermediate Similarity NPD8413 Clinical (unspecified phase)
0.7603 Intermediate Similarity NPD7516 Approved
0.7541 Intermediate Similarity NPD8377 Approved
0.7541 Intermediate Similarity NPD8294 Approved
0.748 Intermediate Similarity NPD8380 Approved
0.748 Intermediate Similarity NPD8378 Approved
0.748 Intermediate Similarity NPD8379 Approved
0.748 Intermediate Similarity NPD8335 Approved
0.748 Intermediate Similarity NPD8296 Approved
0.7438 Intermediate Similarity NPD8295 Clinical (unspecified phase)
0.7407 Intermediate Similarity NPD46 Approved
0.7407 Intermediate Similarity NPD6698 Approved
0.736 Intermediate Similarity NPD8328 Phase 3
0.7345 Intermediate Similarity NPD7640 Approved
0.7345 Intermediate Similarity NPD7639 Approved
0.7339 Intermediate Similarity NPD7503 Approved
0.7288 Intermediate Similarity NPD4061 Clinical (unspecified phase)
0.7257 Intermediate Similarity NPD7638 Approved
0.7257 Intermediate Similarity NPD4225 Approved
0.7188 Intermediate Similarity NPD8293 Discontinued
0.7188 Intermediate Similarity NPD8074 Phase 3
0.7154 Intermediate Similarity NPD7115 Discovery
0.7143 Intermediate Similarity NPD6370 Approved
0.7132 Intermediate Similarity NPD7736 Approved
0.7117 Intermediate Similarity NPD6399 Phase 3
0.7083 Intermediate Similarity NPD5955 Clinical (unspecified phase)
0.7031 Intermediate Similarity NPD7492 Approved
0.6984 Remote Similarity NPD6054 Approved
0.6984 Remote Similarity NPD6059 Approved
0.6977 Remote Similarity NPD6616 Approved
0.6967 Remote Similarity NPD6053 Discontinued
0.6957 Remote Similarity NPD8029 Clinical (unspecified phase)
0.6953 Remote Similarity NPD6067 Discontinued
0.6923 Remote Similarity NPD7078 Approved
0.6917 Remote Similarity NPD5345 Clinical (unspecified phase)
0.6875 Remote Similarity NPD7983 Approved
0.6852 Remote Similarity NPD6400 Clinical (unspecified phase)
0.6833 Remote Similarity NPD5954 Clinical (unspecified phase)
0.6833 Remote Similarity NPD7899 Clinical (unspecified phase)
0.6829 Remote Similarity NPD6882 Approved
0.6814 Remote Similarity NPD5778 Approved
0.6814 Remote Similarity NPD5779 Approved
0.6803 Remote Similarity NPD6371 Approved
0.6797 Remote Similarity NPD6015 Approved
0.6797 Remote Similarity NPD6016 Approved
0.678 Remote Similarity NPD7632 Discontinued
0.6746 Remote Similarity NPD6009 Approved
0.6744 Remote Similarity NPD5988 Approved
0.6726 Remote Similarity NPD6411 Approved
0.6719 Remote Similarity NPD6319 Approved
0.6697 Remote Similarity NPD4786 Approved
0.6695 Remote Similarity NPD5344 Discontinued
0.6694 Remote Similarity NPD8297 Approved
0.6667 Remote Similarity NPD3667 Approved
0.6667 Remote Similarity NPD8170 Clinical (unspecified phase)
0.664 Remote Similarity NPD4632 Approved
0.6639 Remote Similarity NPD7320 Approved
0.6637 Remote Similarity NPD7838 Discovery
0.6612 Remote Similarity NPD7128 Approved
0.6612 Remote Similarity NPD6402 Approved
0.6612 Remote Similarity NPD5739 Approved
0.6612 Remote Similarity NPD6008 Approved
0.6612 Remote Similarity NPD6675 Approved
0.6609 Remote Similarity NPD7748 Approved
0.6585 Remote Similarity NPD6372 Approved
0.6585 Remote Similarity NPD6373 Approved
0.6581 Remote Similarity NPD6083 Phase 2
0.6581 Remote Similarity NPD6084 Phase 2
0.6581 Remote Similarity NPD7902 Approved
0.6579 Remote Similarity NPD7515 Phase 2
0.6579 Remote Similarity NPD7637 Suspended
0.6549 Remote Similarity NPD6101 Approved
0.6549 Remote Similarity NPD5764 Clinical (unspecified phase)
0.6518 Remote Similarity NPD4251 Approved
0.6518 Remote Similarity NPD4250 Approved
0.6514 Remote Similarity NPD4752 Clinical (unspecified phase)
0.6504 Remote Similarity NPD6881 Approved
0.6504 Remote Similarity NPD6899 Approved
0.6496 Remote Similarity NPD7839 Suspended
0.6493 Remote Similarity NPD6033 Approved
0.648 Remote Similarity NPD6650 Approved
0.648 Remote Similarity NPD6649 Approved
0.6471 Remote Similarity NPD7260 Phase 2
0.6466 Remote Similarity NPD8451 Approved
0.646 Remote Similarity NPD6903 Approved
0.6439 Remote Similarity NPD7829 Approved
0.6439 Remote Similarity NPD7830 Approved
0.6429 Remote Similarity NPD6684 Approved
0.6429 Remote Similarity NPD6409 Approved
0.6429 Remote Similarity NPD7521 Approved
0.6429 Remote Similarity NPD5330 Approved
0.6429 Remote Similarity NPD7334 Approved
0.6429 Remote Similarity NPD4249 Approved
0.6429 Remote Similarity NPD7146 Approved
0.6423 Remote Similarity NPD5701 Approved
0.6423 Remote Similarity NPD5697 Approved
0.6423 Remote Similarity NPD6845 Suspended
0.6418 Remote Similarity NPD8448 Approved
0.6412 Remote Similarity NPD8444 Approved
0.6412 Remote Similarity NPD6921 Approved
0.641 Remote Similarity NPD5695 Phase 3
0.641 Remote Similarity NPD1698 Clinical (unspecified phase)
0.64 Remote Similarity NPD7102 Approved
0.64 Remote Similarity NPD6883 Approved
0.64 Remote Similarity NPD7290 Approved
0.6397 Remote Similarity NPD8392 Approved
0.6397 Remote Similarity NPD8391 Approved
0.6397 Remote Similarity NPD8390 Approved
0.6391 Remote Similarity NPD8340 Approved
0.6391 Remote Similarity NPD8342 Approved
0.6391 Remote Similarity NPD8341 Approved
0.6391 Remote Similarity NPD8299 Approved
0.6372 Remote Similarity NPD7524 Approved
0.6349 Remote Similarity NPD6847 Approved
0.6349 Remote Similarity NPD8130 Phase 1
0.6349 Remote Similarity NPD6617 Approved
0.6349 Remote Similarity NPD6869 Approved
0.6339 Remote Similarity NPD1694 Approved
0.6333 Remote Similarity NPD6648 Approved
0.6325 Remote Similarity NPD7901 Clinical (unspecified phase)
0.6325 Remote Similarity NPD7900 Approved
0.6325 Remote Similarity NPD5282 Discontinued
0.632 Remote Similarity NPD6012 Approved
0.632 Remote Similarity NPD6014 Approved
0.632 Remote Similarity NPD6013 Approved
0.6316 Remote Similarity NPD7513 Clinical (unspecified phase)
0.6316 Remote Similarity NPD7604 Phase 2
0.6316 Remote Similarity NPD6672 Approved
0.6316 Remote Similarity NPD5737 Approved
0.6306 Remote Similarity NPD5362 Discontinued
0.6306 Remote Similarity NPD7154 Phase 3
0.6304 Remote Similarity NPD8449 Approved
0.6293 Remote Similarity NPD8034 Phase 2
0.6293 Remote Similarity NPD8035 Phase 2
0.6288 Remote Similarity NPD5983 Phase 2
0.6283 Remote Similarity NPD3618 Phase 1
0.6277 Remote Similarity NPD5956 Approved
0.6277 Remote Similarity NPD6914 Discontinued
0.6261 Remote Similarity NPD5328 Approved
0.6261 Remote Similarity NPD6051 Approved
0.6259 Remote Similarity NPD8450 Suspended
0.625 Remote Similarity NPD8336 Approved
0.625 Remote Similarity NPD3668 Phase 3
0.625 Remote Similarity NPD3665 Phase 1
0.625 Remote Similarity NPD8337 Approved
0.625 Remote Similarity NPD5696 Approved
0.625 Remote Similarity NPD3666 Approved
0.625 Remote Similarity NPD7338 Clinical (unspecified phase)
0.625 Remote Similarity NPD3133 Approved
0.6241 Remote Similarity NPD7966 Clinical (unspecified phase)
0.624 Remote Similarity NPD6011 Approved
0.6239 Remote Similarity NPD8171 Discontinued
0.6231 Remote Similarity NPD8137 Clinical (unspecified phase)
0.623 Remote Similarity NPD5211 Phase 2
0.6222 Remote Similarity NPD6336 Discontinued
0.622 Remote Similarity NPD6401 Clinical (unspecified phase)
0.6207 Remote Similarity NPD5785 Approved
0.6195 Remote Similarity NPD7520 Clinical (unspecified phase)
0.6194 Remote Similarity NPD7122 Discontinued
0.6194 Remote Similarity NPD7642 Approved
0.619 Remote Similarity NPD7625 Phase 1
0.6183 Remote Similarity NPD7641 Discontinued
0.6182 Remote Similarity NPD5790 Clinical (unspecified phase)
0.617 Remote Similarity NPD8387 Clinical (unspecified phase)
0.6167 Remote Similarity NPD4755 Approved
0.6165 Remote Similarity NPD8266 Approved
0.6165 Remote Similarity NPD8267 Approved
0.6165 Remote Similarity NPD8268 Approved
0.6165 Remote Similarity NPD8269 Approved
0.6161 Remote Similarity NPD6695 Phase 3
0.6154 Remote Similarity NPD5693 Phase 1
0.6154 Remote Similarity NPD6079 Approved
0.6147 Remote Similarity NPD5784 Clinical (unspecified phase)
0.6142 Remote Similarity NPD4634 Approved
0.6134 Remote Similarity NPD6356 Clinical (unspecified phase)
0.6129 Remote Similarity NPD5141 Approved
0.6121 Remote Similarity NPD1695 Approved
0.6121 Remote Similarity NPD4753 Phase 2
0.6111 Remote Similarity NPD7228 Approved
0.6102 Remote Similarity NPD4202 Approved
0.6087 Remote Similarity NPD4751 Clinical (unspecified phase)
0.6066 Remote Similarity NPD5286 Approved
0.6066 Remote Similarity NPD4700 Approved
0.6066 Remote Similarity NPD4696 Approved
0.6066 Remote Similarity NPD5285 Approved
0.6053 Remote Similarity NPD1733 Clinical (unspecified phase)
0.6053 Remote Similarity NPD6082 Clinical (unspecified phase)

Structure

External Identifiers

PubChem CID   44575541
ChEMBL   CHEMBL509742
ZINC  

Physicochemical Properties

Molecular Weight:  520.27
ALogP:  -1.5282
MLogP:  3.55
XLogP:  1.053
# Rotatable Bonds:  9
Polar Surface Area:  112.91
# H-Bond Aceptor:  9
# H-Bond Donor:  2
# Rings:  6
# Heavy Atoms:  37

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
Similar NPs/Drugs