Natural Product: NPC228511

Natural Product ID:  NPC228511
Common Name:   Cytochalasin Z13
IUPAC Name:   (3S,3aS,6S,7S,7aS)-3-benzyl-6,7a-dihydroxy-7-[(E,4S,6S)-6-hydroxy-4-methyl-5-oxohept-1-enyl]-4,5-dimethyl-3,3a,6,7-tetrahydro-2H-isoindol-1-one
Synonyms:   Cytochalasin Z13
Molecular Formula:   C25H33NO5
Standard InCHIKey:  DCWOIJNXHXDCKT-YJFGZGKKSA-N
Standard InCHI:  InChI=1S/C25H33NO5/c1-14(22(28)17(4)27)9-8-12-19-23(29)16(3)15(2)21-20(26-24(30)25(19,21)31)13-18-10-6-5-7-11-18/h5-8,10-12,14,17,19-21,23,27,29,31H,9,13H2,1-4H3,(H,26,30)/b12-8+/t14-,17-,19-,20-,21-,23+,25+/m0/s1
Canonical SMILES:  O=C([C@H](C/C=C/[C@H]1[C@H](O)C(=C([C@@H]2[C@@]1(O)C(=N[C@H]2Cc1ccccc1)O)C)C)C)[C@@H](O)C
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO33507 spicaria elegans Species NA NA PMID[18507474]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT181 Cell Line Bel-7402 Homo sapiens IC50 = 88000 nM 15270579
NPT116 Cell Line HL-60 Homo sapiens IC50 = 80000 nM 15270579
NPT168 Cell Line P388 Mus musculus IC50 = 67000 nM 10.6019/CHEMBL1201861
NPT81 Cell Line A549 Homo sapiens IC50 = 76000 nM 18443127

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC228511 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9921 High Similarity NPC113325
0.9921 High Similarity NPC279045
0.9535 High Similarity NPC175870
0.944 High Similarity NPC278097
0.9375 High Similarity NPC42423
0.9328 High Similarity NPC49565
0.9291 High Similarity NPC71271
0.9055 High Similarity NPC472414
0.8992 High Similarity NPC295478
0.8898 High Similarity NPC472415
0.8889 High Similarity NPC239770
0.8824 High Similarity NPC108852
0.8824 High Similarity NPC111586
0.8824 High Similarity NPC261709
0.8531 High Similarity NPC4108
0.8519 High Similarity NPC90693
0.8519 High Similarity NPC64897
0.85 High Similarity NPC262216
0.844 Intermediate Similarity NPC31171
0.844 Intermediate Similarity NPC237240
0.8433 Intermediate Similarity NPC183722
0.8394 Intermediate Similarity NPC208725
0.8264 Intermediate Similarity NPC201692
0.8148 Intermediate Similarity NPC472413
0.8125 Intermediate Similarity NPC173934
0.8015 Intermediate Similarity NPC116057
0.7857 Intermediate Similarity NPC15506
0.7848 Intermediate Similarity NPC477115
0.7778 Intermediate Similarity NPC156348
0.7444 Intermediate Similarity NPC188010
0.7361 Intermediate Similarity NPC477680
0.7286 Intermediate Similarity NPC477248
0.7286 Intermediate Similarity NPC477249
0.7174 Intermediate Similarity NPC190663
0.7162 Intermediate Similarity NPC471201
0.7153 Intermediate Similarity NPC314992
0.7134 Intermediate Similarity NPC217801
0.7132 Intermediate Similarity NPC88267
0.7132 Intermediate Similarity NPC113326
0.7132 Intermediate Similarity NPC194390
0.7132 Intermediate Similarity NPC224610
0.7132 Intermediate Similarity NPC2265
0.7124 Intermediate Similarity NPC227905
0.7124 Intermediate Similarity NPC146097
0.7124 Intermediate Similarity NPC339338
0.7105 Intermediate Similarity NPC328824
0.7071 Intermediate Similarity NPC160493
0.7055 Intermediate Similarity NPC328070
0.7047 Intermediate Similarity NPC322526
0.7037 Intermediate Similarity NPC474544
0.7037 Intermediate Similarity NPC1986
0.7032 Intermediate Similarity NPC185404
0.7021 Intermediate Similarity NPC35996
0.7013 Intermediate Similarity NPC476757
0.6993 Remote Similarity NPC44649
0.698 Remote Similarity NPC473052
0.698 Remote Similarity NPC473055
0.6937 Remote Similarity NPC235460
0.6929 Remote Similarity NPC478016
0.6929 Remote Similarity NPC478015
0.6929 Remote Similarity NPC478014
0.6929 Remote Similarity NPC80150
0.6923 Remote Similarity NPC47667
0.6913 Remote Similarity NPC64205
0.6906 Remote Similarity NPC237420
0.6903 Remote Similarity NPC94602
0.6899 Remote Similarity NPC469457
0.6892 Remote Similarity NPC132847
0.6846 Remote Similarity NPC474787
0.6846 Remote Similarity NPC9687
0.6846 Remote Similarity NPC475318
0.6846 Remote Similarity NPC49577
0.6846 Remote Similarity NPC260045
0.6846 Remote Similarity NPC476102
0.6846 Remote Similarity NPC90194
0.6846 Remote Similarity NPC475598
0.6846 Remote Similarity NPC273907
0.6846 Remote Similarity NPC293377
0.6846 Remote Similarity NPC76785
0.6846 Remote Similarity NPC474811
0.6846 Remote Similarity NPC474855
0.6846 Remote Similarity NPC79465
0.6846 Remote Similarity NPC118099
0.6846 Remote Similarity NPC151706
0.6824 Remote Similarity NPC3202
0.6824 Remote Similarity NPC475345
0.6805 Remote Similarity NPC203005
0.6786 Remote Similarity NPC310467
0.6784 Remote Similarity NPC475649
0.6774 Remote Similarity NPC475578
0.6772 Remote Similarity NPC58674
0.6767 Remote Similarity NPC274089
0.6767 Remote Similarity NPC191215
0.6761 Remote Similarity NPC476184
0.6761 Remote Similarity NPC476281
0.673 Remote Similarity NPC275839
0.6728 Remote Similarity NPC476194
0.6726 Remote Similarity NPC120667
0.6726 Remote Similarity NPC278272
0.6724 Remote Similarity NPC295531
0.6714 Remote Similarity NPC169328
0.6713 Remote Similarity NPC474862
0.6709 Remote Similarity NPC470274
0.6706 Remote Similarity NPC476113
0.6705 Remote Similarity NPC471754
0.6705 Remote Similarity NPC473300
0.6705 Remote Similarity NPC475336
0.6705 Remote Similarity NPC453583
0.6705 Remote Similarity NPC317882
0.6692 Remote Similarity NPC211551
0.669 Remote Similarity NPC476183
0.669 Remote Similarity NPC477061
0.669 Remote Similarity NPC45777
0.6689 Remote Similarity NPC6570
0.6689 Remote Similarity NPC49272
0.6686 Remote Similarity NPC469973
0.6686 Remote Similarity NPC88378
0.6686 Remote Similarity NPC211713
0.6686 Remote Similarity NPC327699
0.6667 Remote Similarity NPC108286
0.6667 Remote Similarity NPC150712
0.6667 Remote Similarity NPC476278
0.6667 Remote Similarity NPC67246
0.6667 Remote Similarity NPC197921
0.6667 Remote Similarity NPC33372
0.6667 Remote Similarity NPC260194
0.6644 Remote Similarity NPC65310
0.6642 Remote Similarity NPC111108
0.6642 Remote Similarity NPC471189
0.6623 Remote Similarity NPC91953
0.6621 Remote Similarity NPC476241
0.6621 Remote Similarity NPC476260
0.6618 Remote Similarity NPC113012
0.6618 Remote Similarity NPC122926
0.661 Remote Similarity NPC471629
0.661 Remote Similarity NPC473400
0.661 Remote Similarity NPC306001
0.661 Remote Similarity NPC275170
0.661 Remote Similarity NPC324251
0.661 Remote Similarity NPC206211
0.6605 Remote Similarity NPC207675
0.6605 Remote Similarity NPC212699
0.6601 Remote Similarity NPC153007
0.6597 Remote Similarity NPC252878
0.6594 Remote Similarity NPC273814
0.6593 Remote Similarity NPC472980
0.6591 Remote Similarity NPC471395
0.6589 Remote Similarity NPC25565
0.6587 Remote Similarity NPC316108
0.6584 Remote Similarity NPC476268
0.6581 Remote Similarity NPC475128
0.6579 Remote Similarity NPC68865
0.6575 Remote Similarity NPC476179
0.6575 Remote Similarity NPC476125
0.6562 Remote Similarity NPC472761
0.6556 Remote Similarity NPC242662
0.6556 Remote Similarity NPC215892
0.6556 Remote Similarity NPC321072
0.6556 Remote Similarity NPC191193
0.6554 Remote Similarity NPC259098
0.6554 Remote Similarity NPC197680
0.6554 Remote Similarity NPC40488
0.6552 Remote Similarity NPC473871
0.6552 Remote Similarity NPC46427
0.6552 Remote Similarity NPC473870
0.6552 Remote Similarity NPC6975
0.6545 Remote Similarity NPC67080
0.6541 Remote Similarity NPC471317
0.6538 Remote Similarity NPC473501
0.6538 Remote Similarity NPC475439
0.6538 Remote Similarity NPC473922
0.6533 Remote Similarity NPC246913
0.6528 Remote Similarity NPC202521
0.6522 Remote Similarity NPC477250
0.6519 Remote Similarity NPC471606
0.6519 Remote Similarity NPC208553
0.6519 Remote Similarity NPC473541
0.6519 Remote Similarity NPC181964
0.6516 Remote Similarity NPC251439
0.6516 Remote Similarity NPC469360
0.651 Remote Similarity NPC478147
0.6507 Remote Similarity NPC77691
0.6503 Remote Similarity NPC297145
0.6503 Remote Similarity NPC197743
0.6503 Remote Similarity NPC93343
0.65 Remote Similarity NPC476744
0.6496 Remote Similarity NPC292758
0.6496 Remote Similarity NPC65855
0.6494 Remote Similarity NPC476259
0.649 Remote Similarity NPC313663
0.649 Remote Similarity NPC80599
0.649 Remote Similarity NPC476976
0.6486 Remote Similarity NPC81135
0.6486 Remote Similarity NPC319766
0.6484 Remote Similarity NPC473558
0.6483 Remote Similarity NPC213126
0.6483 Remote Similarity NPC84281
0.6483 Remote Similarity NPC291027
0.6483 Remote Similarity NPC475328
0.6483 Remote Similarity NPC169485

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC228511 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.844 Intermediate Similarity NPD7274 Clinical (unspecified phase)
0.7286 Intermediate Similarity NPD6325 Discontinued
0.7153 Intermediate Similarity NPD2218 Phase 2
0.7153 Intermediate Similarity NPD2217 Approved
0.7099 Intermediate Similarity NPD6406 Approved
0.6918 Remote Similarity NPD4738 Phase 2
0.6857 Remote Similarity NPD5981 Approved
0.6835 Remote Similarity NPD7522 Discontinued
0.6818 Remote Similarity NPD6676 Phase 2
0.6815 Remote Similarity NPD3644 Approved
0.6815 Remote Similarity NPD3643 Approved
0.6815 Remote Similarity NPD3642 Approved
0.6779 Remote Similarity NPD8265 Approved
0.6769 Remote Similarity NPD4760 Clinical (unspecified phase)
0.6763 Remote Similarity NPD5036 Approved
0.6744 Remote Similarity NPD5035 Approved
0.6725 Remote Similarity NPD5030 Phase 2
0.6724 Remote Similarity NPD5038 Approved
0.6724 Remote Similarity NPD5037 Approved
0.6686 Remote Similarity NPD5028 Approved
0.6686 Remote Similarity NPD5026 Approved
0.6686 Remote Similarity NPD5034 Approved
0.6686 Remote Similarity NPD4954 Approved
0.6686 Remote Similarity NPD36 Approved
0.6686 Remote Similarity NPD4955 Approved
0.6644 Remote Similarity NPD2628 Approved
0.6644 Remote Similarity NPD2160 Approved
0.6644 Remote Similarity NPD2627 Approved
0.6644 Remote Similarity NPD2159 Approved
0.6644 Remote Similarity NPD2626 Approved
0.6644 Remote Similarity NPD2625 Approved
0.6643 Remote Similarity NPD3123 Discovery
0.6641 Remote Similarity NPD4814 Discontinued
0.6603 Remote Similarity NPD2575 Approved
0.6597 Remote Similarity NPD5618 Discontinued
0.659 Remote Similarity NPD5032 Approved
0.6577 Remote Similarity NPD3136 Phase 2
0.6569 Remote Similarity NPD4141 Clinical (unspecified phase)
0.6554 Remote Similarity NPD8361 Approved
0.6554 Remote Similarity NPD8360 Approved
0.655 Remote Similarity NPD8470 Clinical (unspecified phase)
0.6549 Remote Similarity NPD4479 Discontinued
0.6549 Remote Similarity NPD2227 Clinical (unspecified phase)
0.6543 Remote Similarity NPD8417 Discontinued
0.6534 Remote Similarity NPD8424 Clinical (unspecified phase)
0.6533 Remote Similarity NPD4621 Approved
0.6533 Remote Similarity NPD4619 Approved
0.6519 Remote Similarity NPD8485 Approved
0.6516 Remote Similarity NPD7978 Discontinued
0.6514 Remote Similarity NPD8407 Phase 2
0.6497 Remote Similarity NPD7488 Clinical (unspecified phase)
0.6497 Remote Similarity NPD3400 Discontinued
0.6493 Remote Similarity NPD179 Clinical (unspecified phase)
0.649 Remote Similarity NPD7714 Approved
0.649 Remote Similarity NPD5729 Clinical (unspecified phase)
0.649 Remote Similarity NPD7715 Approved
0.6483 Remote Similarity NPD4806 Approved
0.6483 Remote Similarity NPD2611 Approved
0.6483 Remote Similarity NPD4216 Approved
0.6483 Remote Similarity NPD4218 Approved
0.6483 Remote Similarity NPD2610 Approved
0.6483 Remote Similarity NPD4807 Approved
0.6483 Remote Similarity NPD3132 Approved
0.6483 Remote Similarity NPD3131 Approved
0.6483 Remote Similarity NPD2609 Approved
0.6483 Remote Similarity NPD2608 Approved
0.6483 Remote Similarity NPD4215 Approved
0.6483 Remote Similarity NPD2612 Approved
0.6483 Remote Similarity NPD4217 Approved
0.6471 Remote Similarity NPD8173 Phase 2
0.6471 Remote Similarity NPD8172 Phase 2
0.6466 Remote Similarity NPD4719 Phase 2
0.6466 Remote Similarity NPD4818 Approved
0.6466 Remote Similarity NPD4817 Approved
0.6461 Remote Similarity NPD6836 Approved
0.6461 Remote Similarity NPD8435 Approved
0.6458 Remote Similarity NPD5305 Approved
0.6458 Remote Similarity NPD5306 Approved
0.6458 Remote Similarity NPD7725 Approved
0.6452 Remote Similarity NPD6897 Clinical (unspecified phase)
0.6447 Remote Similarity NPD6309 Approved
0.6447 Remote Similarity NPD6311 Approved
0.6447 Remote Similarity NPD2238 Phase 2
0.6447 Remote Similarity NPD6310 Approved
0.6443 Remote Similarity NPD5204 Approved
0.6443 Remote Similarity NPD3663 Approved
0.6443 Remote Similarity NPD3664 Approved
0.6443 Remote Similarity NPD3662 Phase 3
0.6443 Remote Similarity NPD3661 Approved
0.6438 Remote Similarity NPD5108 Clinical (unspecified phase)
0.6437 Remote Similarity NPD5027 Approved
0.6437 Remote Similarity NPD5031 Approved
0.6437 Remote Similarity NPD5029 Approved
0.6437 Remote Similarity NPD8368 Discontinued
0.6437 Remote Similarity NPD5039 Approved
0.6418 Remote Similarity NPD5738 Clinical (unspecified phase)
0.6416 Remote Similarity NPD4956 Approved
0.6414 Remote Similarity NPD2956 Clinical (unspecified phase)
0.6413 Remote Similarity NPD8486 Clinical (unspecified phase)
0.64 Remote Similarity NPD5202 Clinical (unspecified phase)
0.64 Remote Similarity NPD4620 Approved
0.64 Remote Similarity NPD5201 Approved
0.64 Remote Similarity NPD4617 Approved
0.64 Remote Similarity NPD5203 Approved
0.64 Remote Similarity NPD2613 Approved
0.6398 Remote Similarity NPD7613 Discontinued
0.6398 Remote Similarity NPD7527 Clinical (unspecified phase)
0.6398 Remote Similarity NPD52 Approved
0.6398 Remote Similarity NPD7526 Approved
0.6395 Remote Similarity NPD5157 Phase 1
0.6395 Remote Similarity NPD5158 Clinical (unspecified phase)
0.6395 Remote Similarity NPD5159 Phase 2
0.6389 Remote Similarity NPD1710 Approved
0.6383 Remote Similarity NPD1711 Phase 2
0.6383 Remote Similarity NPD2629 Approved
0.637 Remote Similarity NPD3529 Phase 2
0.637 Remote Similarity NPD2173 Clinical (unspecified phase)
0.6357 Remote Similarity NPD6690 Approved
0.6352 Remote Similarity NPD8323 Discontinued
0.635 Remote Similarity NPD4095 Clinical (unspecified phase)
0.6346 Remote Similarity NPD2161 Phase 2
0.6343 Remote Similarity NPD854 Approved
0.6343 Remote Similarity NPD855 Approved
0.634 Remote Similarity NPD5120 Approved
0.634 Remote Similarity NPD5121 Approved
0.634 Remote Similarity NPD5119 Approved
0.6333 Remote Similarity NPD7084 Phase 3
0.6333 Remote Similarity NPD3626 Phase 3
0.6325 Remote Similarity NPD7972 Discontinued
0.6324 Remote Similarity NPD999 Phase 2
0.6312 Remote Similarity NPD4869 Clinical (unspecified phase)
0.6312 Remote Similarity NPD2229 Approved
0.6312 Remote Similarity NPD2228 Approved
0.6312 Remote Similarity NPD2234 Approved
0.6303 Remote Similarity NPD7749 Clinical (unspecified phase)
0.6301 Remote Similarity NPD4135 Approved
0.6301 Remote Similarity NPD4106 Approved
0.6301 Remote Similarity NPD4136 Approved
0.6299 Remote Similarity NPD7113 Clinical (unspecified phase)
0.6298 Remote Similarity NPD5968 Phase 3
0.6296 Remote Similarity NPD6647 Phase 2
0.6296 Remote Similarity NPD3681 Approved
0.6296 Remote Similarity NPD3683 Approved
0.6296 Remote Similarity NPD3680 Approved
0.6296 Remote Similarity NPD3682 Approved
0.6294 Remote Similarity NPD6775 Clinical (unspecified phase)
0.6276 Remote Similarity NPD4209 Clinical (unspecified phase)
0.6275 Remote Similarity NPD2571 Approved
0.6275 Remote Similarity NPD3090 Approved
0.6275 Remote Similarity NPD3614 Approved
0.6275 Remote Similarity NPD2570 Approved
0.6275 Remote Similarity NPD2572 Clinical (unspecified phase)
0.6275 Remote Similarity NPD3088 Approved
0.6275 Remote Similarity NPD2566 Approved
0.6275 Remote Similarity NPD4745 Approved
0.6275 Remote Similarity NPD3089 Approved
0.6275 Remote Similarity NPD4746 Phase 3
0.6275 Remote Similarity NPD2574 Discontinued
0.6275 Remote Similarity NPD2573 Approved
0.6275 Remote Similarity NPD3615 Approved
0.6275 Remote Similarity NPD3087 Approved
0.6275 Remote Similarity NPD3616 Approved
0.6268 Remote Similarity NPD9618 Approved
0.6268 Remote Similarity NPD9614 Approved
0.6259 Remote Similarity NPD5350 Clinical (unspecified phase)
0.6259 Remote Similarity NPD5351 Clinical (unspecified phase)
0.625 Remote Similarity NPD7910 Clinical (unspecified phase)
0.6243 Remote Similarity NPD5033 Approved
0.6241 Remote Similarity NPD9609 Approved
0.6241 Remote Similarity NPD9611 Approved
0.6241 Remote Similarity NPD9612 Approved
0.6232 Remote Similarity NPD6038 Clinical (unspecified phase)
0.6229 Remote Similarity NPD5190 Phase 2
0.6224 Remote Similarity NPD7508 Discontinued
0.6224 Remote Similarity NPD1348 Approved
0.6218 Remote Similarity NPD6852 Discontinued
0.6216 Remote Similarity NPD2232 Approved
0.6216 Remote Similarity NPD2230 Approved
0.6216 Remote Similarity NPD2233 Approved
0.6214 Remote Similarity NPD4025 Clinical (unspecified phase)
0.6213 Remote Similarity NPD7975 Clinical (unspecified phase)
0.6211 Remote Similarity NPD3300 Phase 2
0.6211 Remote Similarity NPD7236 Approved
0.6209 Remote Similarity NPD7908 Discontinued
0.6204 Remote Similarity NPD1018 Approved
0.6204 Remote Similarity NPD5717 Approved
0.6203 Remote Similarity NPD2174 Clinical (unspecified phase)
0.62 Remote Similarity NPD4103 Phase 2
0.62 Remote Similarity NPD4104 Clinical (unspecified phase)
0.6194 Remote Similarity NPD4684 Phase 3
0.6194 Remote Similarity NPD4685 Phase 3
0.6194 Remote Similarity NPD4686 Approved
0.6187 Remote Similarity NPD4720 Approved
0.6187 Remote Similarity NPD4718 Approved
0.6187 Remote Similarity NPD4717 Approved
0.6183 Remote Similarity NPD3718 Approved
0.6183 Remote Similarity NPD3719 Approved
0.6176 Remote Similarity NPD4231 Approved
0.6176 Remote Similarity NPD5765 Approved
0.6176 Remote Similarity NPD4229 Approved

Structure

External Identifiers

PubChem CID   24970397
ChEMBL   CHEMBL458323
ZINC  

Physicochemical Properties

Molecular Weight:  427.24
ALogP:  -0.4223
MLogP:  3.55
XLogP:  3.2
# Rotatable Bonds:  15
Polar Surface Area:  110.35
# H-Bond Aceptor:  6
# H-Bond Donor:  4
# Rings:  3
# Heavy Atoms:  31

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs