Natural Product: NPC222455

Natural Product ID:  NPC222455
Common Name:   1,3-Dihydroxy-9,10-Anthraquinone 3-O-Beta-D-Glucoside
IUPAC Name:   1-hydroxy-3-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyanthracene-9,10-dione
Synonyms:   Xanthopupurin 3-O-beta-D-glucoside
Molecular Formula:   C20H18O9
Standard InCHIKey:  MVYMTRGKWWWUAR-DBTZYBQZSA-N
Standard InCHI:  InChI=1S/C20H18O9/c21-7-13-17(25)18(26)19(27)20(29-13)28-8-5-11-14(12(22)6-8)16(24)10-4-2-1-3-9(10)15(11)23/h1-6,13,17-22,25-27H,7H2/t13-,17-,18+,19-,20-/m1/s1
Canonical SMILES:  OC[C@H]1O[C@@H](Oc2cc(O)c3c(c2)C(=O)c2c(C3=O)cccc2)[C@@H]([C@H]([C@@H]1O)O)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO28159 Rubia akane Species Rubiaceae Eukaryota PMID[8176404]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT2 Others Unspecified Activity = 65.5 % 23317013
NPT2 Others Unspecified Activity = 0 % 10924160
NPT2 Others Unspecified Activity = 85.2 % PubChem BioAssay data set
NPT2 Others Unspecified Activity = 71.9 % 20674375

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC222455 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9753 High Similarity NPC3718
0.9752 High Similarity NPC76128
0.9752 High Similarity NPC271385
0.9752 High Similarity NPC30432
0.9752 High Similarity NPC111536
0.9752 High Similarity NPC5029
0.9693 High Similarity NPC475246
0.9632 High Similarity NPC68381
0.9576 High Similarity NPC277710
0.9576 High Similarity NPC153578
0.9576 High Similarity NPC299149
0.9576 High Similarity NPC114257
0.9573 High Similarity NPC475233
0.9573 High Similarity NPC46958
0.9518 High Similarity NPC477860
0.9518 High Similarity NPC475161
0.9458 High Similarity NPC212290
0.9451 High Similarity NPC98776
0.9448 High Similarity NPC298778
0.9437 High Similarity NPC101116
0.9437 High Similarity NPC212099
0.9394 High Similarity NPC146803
0.9387 High Similarity NPC259905
0.9383 High Similarity NPC178851
0.9349 High Similarity NPC87583
0.9333 High Similarity NPC472054
0.9333 High Similarity NPC85368
0.9333 High Similarity NPC199357
0.9317 High Similarity NPC278329
0.9317 High Similarity NPC146837
0.9313 High Similarity NPC472320
0.9313 High Similarity NPC271479
0.9308 High Similarity NPC313163
0.9308 High Similarity NPC258035
0.9308 High Similarity NPC156457
0.9308 High Similarity NPC161749
0.9308 High Similarity NPC197896
0.9294 High Similarity NPC105591
0.9277 High Similarity NPC474345
0.925 High Similarity NPC73511
0.925 High Similarity NPC308265
0.9245 High Similarity NPC170475
0.9245 High Similarity NPC261866
0.9217 High Similarity NPC213052
0.9207 High Similarity NPC45400
0.9202 High Similarity NPC165720
0.9202 High Similarity NPC178281
0.9198 High Similarity NPC216752
0.9193 High Similarity NPC328093
0.9187 High Similarity NPC23817
0.9182 High Similarity NPC99233
0.9182 High Similarity NPC26195
0.9182 High Similarity NPC169248
0.9182 High Similarity NPC97052
0.9182 High Similarity NPC39351
0.9182 High Similarity NPC72649
0.9177 High Similarity NPC259767
0.9177 High Similarity NPC259182
0.9177 High Similarity NPC121001
0.9177 High Similarity NPC88484
0.9172 High Similarity NPC315221
0.9162 High Similarity NPC199533
0.9162 High Similarity NPC470454
0.9152 High Similarity NPC229687
0.9141 High Similarity NPC29830
0.9141 High Similarity NPC168822
0.9141 High Similarity NPC88043
0.9136 High Similarity NPC47923
0.9136 High Similarity NPC303913
0.9125 High Similarity NPC206378
0.9125 High Similarity NPC45165
0.9119 High Similarity NPC39360
0.9119 High Similarity NPC29763
0.9119 High Similarity NPC106625
0.9119 High Similarity NPC210003
0.9119 High Similarity NPC143851
0.9119 High Similarity NPC83283
0.9118 High Similarity NPC313452
0.9102 High Similarity NPC203751
0.9096 High Similarity NPC44558
0.9096 High Similarity NPC105511
0.9096 High Similarity NPC471416
0.9096 High Similarity NPC204937
0.9096 High Similarity NPC34287
0.9096 High Similarity NPC149011
0.9091 High Similarity NPC229729
0.9091 High Similarity NPC249977
0.9085 High Similarity NPC7752
0.9085 High Similarity NPC478022
0.9085 High Similarity NPC478020
0.908 High Similarity NPC131745
0.908 High Similarity NPC189142
0.908 High Similarity NPC300537
0.908 High Similarity NPC44947
0.908 High Similarity NPC77660
0.908 High Similarity NPC472876
0.908 High Similarity NPC259834
0.908 High Similarity NPC127782
0.9074 High Similarity NPC200708
0.9068 High Similarity NPC177742
0.9068 High Similarity NPC6985
0.9068 High Similarity NPC43638
0.9064 High Similarity NPC231254
0.9062 High Similarity NPC95090
0.9062 High Similarity NPC27408
0.9048 High Similarity NPC63105
0.9042 High Similarity NPC67134
0.9042 High Similarity NPC48773
0.9042 High Similarity NPC47140
0.9042 High Similarity NPC205076
0.9042 High Similarity NPC307518
0.9036 High Similarity NPC170675
0.9036 High Similarity NPC112755
0.9036 High Similarity NPC471457
0.9036 High Similarity NPC473202
0.9036 High Similarity NPC472381
0.9036 High Similarity NPC472383
0.903 High Similarity NPC70441
0.903 High Similarity NPC236934
0.903 High Similarity NPC5778
0.9024 High Similarity NPC257566
0.9024 High Similarity NPC124155
0.9024 High Similarity NPC309025
0.9024 High Similarity NPC243930
0.9024 High Similarity NPC66087
0.9024 High Similarity NPC191306
0.9024 High Similarity NPC179198
0.9024 High Similarity NPC270335
0.9024 High Similarity NPC19709
0.9024 High Similarity NPC278419
0.9024 High Similarity NPC183672
0.9024 High Similarity NPC88023
0.9018 High Similarity NPC270675
0.9018 High Similarity NPC477629
0.9018 High Similarity NPC472994
0.9018 High Similarity NPC195685
0.9018 High Similarity NPC210961
0.9018 High Similarity NPC477628
0.9012 High Similarity NPC43761
0.9006 High Similarity NPC293227
0.9006 High Similarity NPC473717
0.9006 High Similarity NPC127406
0.9006 High Similarity NPC78492
0.9006 High Similarity NPC203500
0.9006 High Similarity NPC323593
0.9006 High Similarity NPC149368
0.9006 High Similarity NPC208152
0.9006 High Similarity NPC265480
0.9006 High Similarity NPC473631
0.9006 High Similarity NPC475662
0.9006 High Similarity NPC307938
0.9 High Similarity NPC84494
0.9 High Similarity NPC245059
0.9 High Similarity NPC185103
0.8994 High Similarity NPC289876
0.8994 High Similarity NPC102053
0.8988 High Similarity NPC175230
0.8988 High Similarity NPC168789
0.8988 High Similarity NPC172033
0.8988 High Similarity NPC88560
0.8982 High Similarity NPC183357
0.8982 High Similarity NPC22195
0.8982 High Similarity NPC474434
0.8982 High Similarity NPC224462
0.8982 High Similarity NPC218488
0.8982 High Similarity NPC78734
0.8982 High Similarity NPC76047
0.8982 High Similarity NPC212748
0.8982 High Similarity NPC150767
0.8982 High Similarity NPC231194
0.8982 High Similarity NPC51326
0.8982 High Similarity NPC21190
0.8976 High Similarity NPC58716
0.8976 High Similarity NPC477502
0.8976 High Similarity NPC45618
0.8976 High Similarity NPC146792
0.8976 High Similarity NPC93099
0.8976 High Similarity NPC63470
0.8976 High Similarity NPC92565
0.8976 High Similarity NPC135345
0.8976 High Similarity NPC160156
0.8976 High Similarity NPC116745
0.897 High Similarity NPC311830
0.897 High Similarity NPC277205
0.897 High Similarity NPC99216
0.897 High Similarity NPC22832
0.8963 High Similarity NPC473043
0.8963 High Similarity NPC190450
0.896 High Similarity NPC65489
0.8957 High Similarity NPC97285
0.8957 High Similarity NPC153342
0.8957 High Similarity NPC271270
0.8957 High Similarity NPC142860
0.8957 High Similarity NPC246469
0.8951 High Similarity NPC44931
0.8951 High Similarity NPC108831
0.8951 High Similarity NPC129827
0.8951 High Similarity NPC197304
0.8951 High Similarity NPC133671
0.8951 High Similarity NPC122809

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC222455 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9308 High Similarity NPD4381 Clinical (unspecified phase)
0.8976 High Similarity NPD3818 Discontinued
0.8869 High Similarity NPD7074 Phase 3
0.8812 High Similarity NPD4380 Phase 2
0.881 High Similarity NPD7054 Approved
0.881 High Similarity NPD7804 Clinical (unspecified phase)
0.8765 High Similarity NPD6559 Discontinued
0.8757 High Similarity NPD7472 Approved
0.8743 High Similarity NPD7879 Clinical (unspecified phase)
0.8713 High Similarity NPD4338 Clinical (unspecified phase)
0.8706 High Similarity NPD6797 Phase 2
0.8663 High Similarity NPD8312 Approved
0.8663 High Similarity NPD8313 Approved
0.8655 High Similarity NPD7251 Discontinued
0.8605 High Similarity NPD7808 Phase 3
0.8563 High Similarity NPD6959 Discontinued
0.8545 High Similarity NPD4868 Clinical (unspecified phase)
0.8537 High Similarity NPD2393 Clinical (unspecified phase)
0.8537 High Similarity NPD7819 Suspended
0.8521 High Similarity NPD6168 Clinical (unspecified phase)
0.8521 High Similarity NPD6167 Clinical (unspecified phase)
0.8521 High Similarity NPD6166 Phase 2
0.8494 Intermediate Similarity NPD7075 Discontinued
0.8476 Intermediate Similarity NPD1934 Approved
0.8421 Intermediate Similarity NPD3751 Discontinued
0.8407 Intermediate Similarity NPD6782 Approved
0.8407 Intermediate Similarity NPD6780 Approved
0.8407 Intermediate Similarity NPD6776 Approved
0.8407 Intermediate Similarity NPD6781 Approved
0.8407 Intermediate Similarity NPD6777 Approved
0.8407 Intermediate Similarity NPD6779 Approved
0.8407 Intermediate Similarity NPD6778 Approved
0.8402 Intermediate Similarity NPD6232 Discontinued
0.8373 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.8372 Intermediate Similarity NPD5844 Phase 1
0.8363 Intermediate Similarity NPD7473 Discontinued
0.8354 Intermediate Similarity NPD1549 Phase 2
0.8313 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.8303 Intermediate Similarity NPD7411 Suspended
0.8291 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.8291 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.827 Intermediate Similarity NPD7435 Discontinued
0.8263 Intermediate Similarity NPD5402 Approved
0.8253 Intermediate Similarity NPD6801 Discontinued
0.8245 Intermediate Similarity NPD8151 Discontinued
0.8204 Intermediate Similarity NPD2801 Approved
0.8187 Intermediate Similarity NPD3787 Discontinued
0.8176 Intermediate Similarity NPD5494 Approved
0.8172 Intermediate Similarity NPD7698 Approved
0.8172 Intermediate Similarity NPD7697 Approved
0.8172 Intermediate Similarity NPD7696 Phase 3
0.8171 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.8166 Intermediate Similarity NPD3749 Approved
0.816 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.816 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.8132 Intermediate Similarity NPD6535 Approved
0.8132 Intermediate Similarity NPD6534 Approved
0.8128 Intermediate Similarity NPD7870 Phase 2
0.8128 Intermediate Similarity NPD7871 Phase 2
0.8107 Intermediate Similarity NPD3882 Suspended
0.8103 Intermediate Similarity NPD7228 Approved
0.8098 Intermediate Similarity NPD1511 Approved
0.8095 Intermediate Similarity NPD7701 Phase 2
0.8095 Intermediate Similarity NPD1465 Phase 2
0.8092 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.8072 Intermediate Similarity NPD3226 Approved
0.8061 Intermediate Similarity NPD5403 Approved
0.805 Intermediate Similarity NPD1510 Phase 2
0.8047 Intermediate Similarity NPD3817 Phase 2
0.8036 Intermediate Similarity NPD37 Approved
0.8025 Intermediate Similarity NPD3750 Approved
0.8024 Intermediate Similarity NPD6599 Discontinued
0.8021 Intermediate Similarity NPD6823 Phase 2
0.8012 Intermediate Similarity NPD6234 Discontinued
0.8011 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.801 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.801 Intermediate Similarity NPD7874 Approved
0.8 Intermediate Similarity NPD4967 Phase 2
0.8 Intermediate Similarity NPD1512 Approved
0.8 Intermediate Similarity NPD7699 Phase 2
0.8 Intermediate Similarity NPD2796 Approved
0.8 Intermediate Similarity NPD4966 Approved
0.8 Intermediate Similarity NPD4965 Approved
0.8 Intermediate Similarity NPD7700 Phase 2
0.7988 Intermediate Similarity NPD6799 Approved
0.7969 Intermediate Similarity NPD7801 Approved
0.7969 Intermediate Similarity NPD7783 Phase 2
0.7969 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.7939 Intermediate Similarity NPD2532 Approved
0.7939 Intermediate Similarity NPD2533 Approved
0.7939 Intermediate Similarity NPD2534 Approved
0.7939 Intermediate Similarity NPD5401 Approved
0.7919 Intermediate Similarity NPD7199 Phase 2
0.7895 Intermediate Similarity NPD7768 Phase 2
0.7882 Intermediate Similarity NPD8455 Phase 2
0.788 Intermediate Similarity NPD6213 Phase 3
0.788 Intermediate Similarity NPD6212 Phase 3
0.788 Intermediate Similarity NPD6214 Clinical (unspecified phase)
0.7845 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7842 Intermediate Similarity NPD8320 Phase 1
0.7842 Intermediate Similarity NPD8319 Approved
0.7826 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.7812 Intermediate Similarity NPD1607 Approved
0.7805 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7805 Intermediate Similarity NPD4628 Phase 3
0.7799 Intermediate Similarity NPD1240 Approved
0.7791 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.776 Intermediate Similarity NPD7584 Approved
0.7751 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7738 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.773 Intermediate Similarity NPD2346 Discontinued
0.7727 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7722 Intermediate Similarity NPD7240 Approved
0.7716 Intermediate Similarity NPD3748 Approved
0.7705 Intermediate Similarity NPD8150 Discontinued
0.7692 Intermediate Similarity NPD1653 Approved
0.7669 Intermediate Similarity NPD1551 Phase 2
0.7665 Intermediate Similarity NPD7390 Discontinued
0.7647 Intermediate Similarity NPD7458 Discontinued
0.7636 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7624 Intermediate Similarity NPD7685 Pre-registration
0.7619 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7612 Intermediate Similarity NPD8155 Clinical (unspecified phase)
0.7609 Intermediate Similarity NPD8434 Phase 2
0.7569 Intermediate Similarity NPD5953 Discontinued
0.7561 Intermediate Similarity NPD2935 Discontinued
0.753 Intermediate Similarity NPD2800 Approved
0.7528 Intermediate Similarity NPD3926 Phase 2
0.7526 Intermediate Similarity NPD7211 Clinical (unspecified phase)
0.7474 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7472 Intermediate Similarity NPD5710 Approved
0.7472 Intermediate Similarity NPD5711 Approved
0.7469 Intermediate Similarity NPD1613 Approved
0.7469 Intermediate Similarity NPD943 Approved
0.7469 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7468 Intermediate Similarity NPD1470 Approved
0.7455 Intermediate Similarity NPD6100 Approved
0.7455 Intermediate Similarity NPD6099 Approved
0.7448 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7427 Intermediate Similarity NPD8059 Phase 3
0.7427 Intermediate Similarity NPD8058 Clinical (unspecified phase)
0.7427 Intermediate Similarity NPD920 Approved
0.7425 Intermediate Similarity NPD6674 Discontinued
0.7412 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.741 Intermediate Similarity NPD2344 Approved
0.7394 Intermediate Similarity NPD2799 Discontinued
0.7381 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7368 Intermediate Similarity NPD6273 Approved
0.7363 Intermediate Similarity NPD7286 Phase 2
0.736 Intermediate Similarity NPD7585 Approved
0.7353 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7349 Intermediate Similarity NPD5404 Approved
0.7349 Intermediate Similarity NPD5405 Approved
0.7349 Intermediate Similarity NPD5406 Approved
0.7349 Intermediate Similarity NPD5408 Approved
0.7346 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7346 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7346 Intermediate Similarity NPD2313 Discontinued
0.7337 Intermediate Similarity NPD6190 Approved
0.7329 Intermediate Similarity NPD4908 Phase 1
0.7318 Intermediate Similarity NPD1247 Approved
0.731 Intermediate Similarity NPD7583 Approved
0.7306 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7305 Intermediate Similarity NPD7266 Discontinued
0.7303 Intermediate Similarity NPD919 Approved
0.7297 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.7294 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.7289 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.7278 Intermediate Similarity NPD7229 Phase 3
0.7277 Intermediate Similarity NPD4360 Phase 2
0.7277 Intermediate Similarity NPD4363 Phase 3
0.7249 Intermediate Similarity NPD4287 Approved
0.7245 Intermediate Similarity NPD7680 Approved
0.7235 Intermediate Similarity NPD2309 Approved
0.7228 Intermediate Similarity NPD7930 Approved
0.7222 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7219 Intermediate Similarity NPD1243 Approved
0.7216 Intermediate Similarity NPD8285 Discontinued
0.7215 Intermediate Similarity NPD1547 Clinical (unspecified phase)
0.7215 Intermediate Similarity NPD1091 Approved
0.7215 Intermediate Similarity NPD1201 Approved
0.7212 Intermediate Similarity NPD230 Phase 1
0.7212 Intermediate Similarity NPD1933 Approved
0.7209 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.7205 Intermediate Similarity NPD2798 Approved
0.7178 Intermediate Similarity NPD4625 Phase 3
0.7175 Intermediate Similarity NPD5761 Phase 2
0.7175 Intermediate Similarity NPD5760 Phase 2
0.7169 Intermediate Similarity NPD6651 Approved
0.716 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD1203 Approved
0.7135 Intermediate Similarity NPD4288 Approved
0.7134 Intermediate Similarity NPD3764 Approved
0.7127 Intermediate Similarity NPD8127 Discontinued
0.7126 Intermediate Similarity NPD7097 Phase 1
0.712 Intermediate Similarity NPD7177 Discontinued
0.7119 Intermediate Similarity NPD6844 Discontinued
0.7118 Intermediate Similarity NPD5698 Clinical (unspecified phase)
0.7117 Intermediate Similarity NPD6832 Phase 2
0.7108 Intermediate Similarity NPD447 Suspended

Structure

External Identifiers

PubChem CID   44575697
ChEMBL   CHEMBL483826
ZINC  

Physicochemical Properties

Molecular Weight:  402.10
ALogP:  -3.1951
MLogP:  2.67
XLogP:  0.618
# Rotatable Bonds:  8
Polar Surface Area:  153.75
# H-Bond Aceptor:  7
# H-Bond Donor:  5
# Rings:  4
# Heavy Atoms:  29

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs