Natural Product: NPC98776

Natural Product ID:  NPC98776
Common Name:   Frangulin B
IUPAC Name:   3-[(2S,3R,4R)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy-1,8-dihydroxy-6-methylanthracene-9,10-dione
Synonyms:  
Molecular Formula:   C20H18O9
Standard InCHIKey:  AEQMIFRODRFTJF-SLFFLAALSA-N
Standard InCHI:  InChI=1S/C20H18O9/c1-8-2-10-14(12(22)3-8)17(25)15-11(16(10)24)4-9(5-13(15)23)29-19-18(26)20(27,6-21)7-28-19/h2-5,18-19,21-23,26-27H,6-7H2,1H3/t18-,19-,20+/m0/s1
Canonical SMILES:  OC[C@@]1(O)CO[C@H]([C@@H]1O)Oc1cc(O)c2c(c1)C(=O)c1c(C2=O)c(O)cc(c1)C
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO25962 Rhamnus cathartica Species Rhamnaceae Eukaryota HerDing*
NPO30631 Rhamnus frangula Species Rhamnaceae Eukaryota HerDing*
NPO5990 Frangula alnus Species Rhamnaceae Eukaryota TCMID*
NPO25962 Rhamnus cathartica Species Rhamnaceae Eukaryota TCMID*

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT2 Others Unspecified ED50 = 0.8 ug/ml 10.1021/np50085a021
NPT91 Cell Line KB Homo sapiens ED50 = 2.49 ug/ml 10.1021/np50085a021
NPT2757 Individual Protein Purinergic receptor P2Y12 Homo sapiens Inhibition = 4 % 19463000
NPT2757 Individual Protein Purinergic receptor P2Y12 Homo sapiens Ki > 10000 nM 19463000
NPT82 Cell Line MDA-MB-231 Homo sapiens IC50 > 20000 nM 20561793
NPT116 Cell Line HL-60 Homo sapiens IC50 = 15700 nM 20561793
NPT91 Cell Line KB Homo sapiens IC50 = 2100 nM 20561793

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC98776 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9877 High Similarity NPC475233
0.9693 High Similarity NPC76128
0.9693 High Similarity NPC111536
0.9693 High Similarity NPC5029
0.9693 High Similarity NPC271385
0.9693 High Similarity NPC30432
0.9576 High Similarity NPC68381
0.9518 High Similarity NPC475246
0.9518 High Similarity NPC46958
0.9458 High Similarity NPC3718
0.9451 High Similarity NPC473202
0.9451 High Similarity NPC222455
0.9448 High Similarity NPC178851
0.9405 High Similarity NPC277710
0.9405 High Similarity NPC153578
0.9405 High Similarity NPC212290
0.9405 High Similarity NPC299149
0.9405 High Similarity NPC114257
0.9394 High Similarity NPC298778
0.9379 High Similarity NPC470810
0.9349 High Similarity NPC477860
0.9349 High Similarity NPC475161
0.9341 High Similarity NPC146803
0.9333 High Similarity NPC259905
0.9281 High Similarity NPC472054
0.9235 High Similarity NPC315221
0.9226 High Similarity NPC474345
0.9186 High Similarity NPC87583
0.9181 High Similarity NPC313452
0.9167 High Similarity NPC85368
0.9167 High Similarity NPC213052
0.9167 High Similarity NPC199357
0.9146 High Similarity NPC212099
0.9146 High Similarity NPC278329
0.9146 High Similarity NPC216752
0.9146 High Similarity NPC101116
0.9146 High Similarity NPC146837
0.9133 High Similarity NPC105591
0.9112 High Similarity NPC470454
0.9112 High Similarity NPC199533
0.9102 High Similarity NPC191653
0.9091 High Similarity NPC471286
0.908 High Similarity NPC470607
0.9048 High Similarity NPC212748
0.9036 High Similarity NPC478022
0.9036 High Similarity NPC478020
0.9036 High Similarity NPC178281
0.903 High Similarity NPC93215
0.9024 High Similarity NPC470358
0.9018 High Similarity NPC23817
0.9018 High Similarity NPC470606
0.9006 High Similarity NPC154683
0.9006 High Similarity NPC40356
0.9 High Similarity NPC63105
0.8976 High Similarity NPC100849
0.896 High Similarity NPC473717
0.896 High Similarity NPC293227
0.896 High Similarity NPC473631
0.896 High Similarity NPC475662
0.8957 High Similarity NPC149368
0.8957 High Similarity NPC265480
0.8957 High Similarity NPC17521
0.8953 High Similarity NPC84494
0.8953 High Similarity NPC245059
0.8947 High Similarity NPC324220
0.8947 High Similarity NPC312630
0.8944 High Similarity NPC470569
0.8941 High Similarity NPC203751
0.8935 High Similarity NPC313717
0.8935 High Similarity NPC315306
0.8922 High Similarity NPC7752
0.892 High Similarity NPC314672
0.8909 High Similarity NPC200708
0.8909 High Similarity NPC472055
0.8909 High Similarity NPC472320
0.8902 High Similarity NPC470452
0.8902 High Similarity NPC470448
0.8902 High Similarity NPC470453
0.8902 High Similarity NPC208069
0.8902 High Similarity NPC164047
0.8896 High Similarity NPC470603
0.8896 High Similarity NPC99233
0.8896 High Similarity NPC470604
0.8896 High Similarity NPC470605
0.8882 High Similarity NPC235575
0.8882 High Similarity NPC147735
0.8882 High Similarity NPC470568
0.8876 High Similarity NPC476771
0.8862 High Similarity NPC91288
0.8862 High Similarity NPC183672
0.8857 High Similarity NPC229817
0.8857 High Similarity NPC221140
0.8857 High Similarity NPC473686
0.8857 High Similarity NPC475220
0.8857 High Similarity NPC475352
0.8855 High Similarity NPC45124
0.8855 High Similarity NPC74854
0.8855 High Similarity NPC92589
0.8855 High Similarity NPC30655
0.8851 High Similarity NPC478001
0.8848 High Similarity NPC470339
0.8848 High Similarity NPC73511
0.8848 High Similarity NPC279732
0.8841 High Similarity NPC261866
0.8837 High Similarity NPC289876
0.8837 High Similarity NPC102053
0.8834 High Similarity NPC211158
0.8834 High Similarity NPC78021
0.8834 High Similarity NPC106625
0.8834 High Similarity NPC87304
0.8834 High Similarity NPC268950
0.8834 High Similarity NPC155686
0.8834 High Similarity NPC108706
0.8827 High Similarity NPC478148
0.8827 High Similarity NPC149526
0.8827 High Similarity NPC318424
0.8827 High Similarity NPC474772
0.8827 High Similarity NPC474417
0.8827 High Similarity NPC472423
0.8827 High Similarity NPC474744
0.8824 High Similarity NPC241874
0.8824 High Similarity NPC477573
0.8824 High Similarity NPC477572
0.8824 High Similarity NPC477571
0.8824 High Similarity NPC478021
0.882 High Similarity NPC470199
0.882 High Similarity NPC314459
0.8817 High Similarity NPC477502
0.8817 High Similarity NPC472058
0.8817 High Similarity NPC324522
0.8817 High Similarity NPC105414
0.8817 High Similarity NPC249977
0.8817 High Similarity NPC63470
0.8817 High Similarity NPC474024
0.8817 High Similarity NPC470341
0.8817 High Similarity NPC473094
0.8817 High Similarity NPC234497
0.881 High Similarity NPC165720
0.881 High Similarity NPC472049
0.8802 High Similarity NPC44947
0.8802 High Similarity NPC472402
0.8802 High Similarity NPC300537
0.8802 High Similarity NPC131745
0.8802 High Similarity NPC127782
0.8802 High Similarity NPC125991
0.8802 High Similarity NPC259834
0.8795 High Similarity NPC306978
0.8795 High Similarity NPC271479
0.8788 High Similarity NPC43638
0.8788 High Similarity NPC161749
0.8788 High Similarity NPC122809
0.8788 High Similarity NPC313163
0.8788 High Similarity NPC177742
0.8788 High Similarity NPC197896
0.8788 High Similarity NPC258035
0.8788 High Similarity NPC156457
0.8788 High Similarity NPC6985
0.878 High Similarity NPC267242
0.878 High Similarity NPC68727
0.8779 High Similarity NPC108202
0.8779 High Similarity NPC472607
0.8773 High Similarity NPC470338
0.8773 High Similarity NPC476238
0.8773 High Similarity NPC259182
0.8773 High Similarity NPC259767
0.8773 High Similarity NPC470340
0.8773 High Similarity NPC327269
0.8773 High Similarity NPC470337
0.8773 High Similarity NPC473996
0.8773 High Similarity NPC51824
0.8773 High Similarity NPC180944
0.8773 High Similarity NPC268992
0.8773 High Similarity NPC285623
0.8773 High Similarity NPC31627
0.8773 High Similarity NPC113608
0.8773 High Similarity NPC121001
0.8773 High Similarity NPC88484
0.8772 High Similarity NPC158226
0.8772 High Similarity NPC476772
0.8772 High Similarity NPC294501
0.8772 High Similarity NPC260263
0.8772 High Similarity NPC261254
0.8765 High Similarity NPC99613
0.8765 High Similarity NPC202595
0.8765 High Similarity NPC229687
0.8765 High Similarity NPC473095
0.8765 High Similarity NPC472421
0.8765 High Similarity NPC49487
0.8765 High Similarity NPC255641
0.8765 High Similarity NPC290954
0.8765 High Similarity NPC473096
0.8757 High Similarity NPC178173
0.8757 High Similarity NPC119589
0.8757 High Similarity NPC170245
0.8757 High Similarity NPC53640
0.875 High Similarity NPC179198
0.875 High Similarity NPC278419
0.875 High Similarity NPC124038
0.875 High Similarity NPC66087
0.875 High Similarity NPC124155

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC98776 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8941 High Similarity NPD6559 Discontinued
0.8929 High Similarity NPD3818 Discontinued
0.8788 High Similarity NPD4381 Clinical (unspecified phase)
0.8701 High Similarity NPD7879 Clinical (unspecified phase)
0.8547 High Similarity NPD7804 Clinical (unspecified phase)
0.8521 High Similarity NPD6959 Discontinued
0.8497 Intermediate Similarity NPD7074 Phase 3
0.8471 Intermediate Similarity NPD6232 Discontinued
0.8439 Intermediate Similarity NPD7054 Approved
0.843 Intermediate Similarity NPD7473 Discontinued
0.8424 Intermediate Similarity NPD4380 Phase 2
0.8409 Intermediate Similarity NPD8312 Approved
0.8409 Intermediate Similarity NPD8313 Approved
0.8391 Intermediate Similarity NPD7472 Approved
0.8383 Intermediate Similarity NPD7819 Suspended
0.8383 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.837 Intermediate Similarity NPD6781 Approved
0.837 Intermediate Similarity NPD6780 Approved
0.837 Intermediate Similarity NPD6782 Approved
0.837 Intermediate Similarity NPD6776 Approved
0.837 Intermediate Similarity NPD6778 Approved
0.837 Intermediate Similarity NPD6779 Approved
0.837 Intermediate Similarity NPD6777 Approved
0.8344 Intermediate Similarity NPD2533 Approved
0.8344 Intermediate Similarity NPD2532 Approved
0.8344 Intermediate Similarity NPD2534 Approved
0.8343 Intermediate Similarity NPD7075 Discontinued
0.8343 Intermediate Similarity NPD6797 Phase 2
0.8295 Intermediate Similarity NPD7251 Discontinued
0.8249 Intermediate Similarity NPD7808 Phase 3
0.8249 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.8235 Intermediate Similarity NPD7435 Discontinued
0.8229 Intermediate Similarity NPD5844 Phase 1
0.8214 Intermediate Similarity NPD37 Approved
0.8214 Intermediate Similarity NPD6801 Discontinued
0.8214 Intermediate Similarity NPD1934 Approved
0.8211 Intermediate Similarity NPD8151 Discontinued
0.8187 Intermediate Similarity NPD6234 Discontinued
0.8176 Intermediate Similarity NPD4966 Approved
0.8176 Intermediate Similarity NPD4965 Approved
0.8176 Intermediate Similarity NPD3882 Suspended
0.8176 Intermediate Similarity NPD4967 Phase 2
0.8176 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.8166 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.8161 Intermediate Similarity NPD6166 Phase 2
0.8161 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.8161 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.8144 Intermediate Similarity NPD3226 Approved
0.814 Intermediate Similarity NPD5494 Approved
0.8138 Intermediate Similarity NPD7697 Approved
0.8138 Intermediate Similarity NPD7696 Phase 3
0.8138 Intermediate Similarity NPD7698 Approved
0.8121 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.8121 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.8118 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.8098 Intermediate Similarity NPD6534 Approved
0.8098 Intermediate Similarity NPD6535 Approved
0.8095 Intermediate Similarity NPD7871 Phase 2
0.8095 Intermediate Similarity NPD7870 Phase 2
0.8068 Intermediate Similarity NPD3751 Discontinued
0.8068 Intermediate Similarity NPD7228 Approved
0.8063 Intermediate Similarity NPD7701 Phase 2
0.8059 Intermediate Similarity NPD2801 Approved
0.8047 Intermediate Similarity NPD7411 Suspended
0.8023 Intermediate Similarity NPD3749 Approved
0.8012 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.7989 Intermediate Similarity NPD7199 Phase 2
0.7989 Intermediate Similarity NPD6823 Phase 2
0.7988 Intermediate Similarity NPD6599 Discontinued
0.7979 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.7979 Intermediate Similarity NPD7874 Approved
0.7978 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7975 Intermediate Similarity NPD1549 Phase 2
0.7968 Intermediate Similarity NPD7700 Phase 2
0.7968 Intermediate Similarity NPD7699 Phase 2
0.7938 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.7938 Intermediate Similarity NPD7783 Phase 2
0.7938 Intermediate Similarity NPD7801 Approved
0.7914 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.7914 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.7907 Intermediate Similarity NPD3817 Phase 2
0.7907 Intermediate Similarity NPD5402 Approved
0.7853 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7853 Intermediate Similarity NPD2796 Approved
0.7844 Intermediate Similarity NPD6799 Approved
0.7844 Intermediate Similarity NPD1511 Approved
0.7841 Intermediate Similarity NPD3787 Discontinued
0.7833 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7818 Intermediate Similarity NPD2800 Approved
0.7814 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7812 Intermediate Similarity NPD8320 Phase 1
0.7812 Intermediate Similarity NPD8319 Approved
0.7811 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7797 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7791 Intermediate Similarity NPD1510 Phase 2
0.7778 Intermediate Similarity NPD1607 Approved
0.7772 Intermediate Similarity NPD8434 Phase 2
0.7771 Intermediate Similarity NPD4628 Phase 3
0.7759 Intermediate Similarity NPD7768 Phase 2
0.7758 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.7754 Intermediate Similarity NPD6213 Phase 3
0.7754 Intermediate Similarity NPD6214 Clinical (unspecified phase)
0.7754 Intermediate Similarity NPD6212 Phase 3
0.7751 Intermediate Similarity NPD1512 Approved
0.7746 Intermediate Similarity NPD1465 Phase 2
0.774 Intermediate Similarity NPD5710 Approved
0.774 Intermediate Similarity NPD5711 Approved
0.7738 Intermediate Similarity NPD7390 Discontinued
0.7706 Intermediate Similarity NPD5403 Approved
0.7697 Intermediate Similarity NPD2346 Discontinued
0.7692 Intermediate Similarity NPD7240 Approved
0.7676 Intermediate Similarity NPD8150 Discontinued
0.7665 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7665 Intermediate Similarity NPD3750 Approved
0.7654 Intermediate Similarity NPD1240 Approved
0.7641 Intermediate Similarity NPD7584 Approved
0.7616 Intermediate Similarity NPD7458 Discontinued
0.7605 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7602 Intermediate Similarity NPD920 Approved
0.7598 Intermediate Similarity NPD3926 Phase 2
0.7588 Intermediate Similarity NPD5401 Approved
0.7586 Intermediate Similarity NPD8155 Clinical (unspecified phase)
0.7543 Intermediate Similarity NPD8455 Phase 2
0.7541 Intermediate Similarity NPD5953 Discontinued
0.753 Intermediate Similarity NPD1551 Phase 2
0.753 Intermediate Similarity NPD6100 Approved
0.753 Intermediate Similarity NPD6099 Approved
0.753 Intermediate Similarity NPD2935 Discontinued
0.7514 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD7685 Pre-registration
0.75 Intermediate Similarity NPD7211 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD1243 Approved
0.7488 Intermediate Similarity NPD8059 Phase 3
0.7488 Intermediate Similarity NPD8058 Clinical (unspecified phase)
0.7486 Intermediate Similarity NPD1247 Approved
0.7485 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7485 Intermediate Similarity NPD2344 Approved
0.7472 Intermediate Similarity NPD919 Approved
0.7459 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.7456 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7444 Intermediate Similarity NPD7229 Phase 3
0.7427 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7396 Intermediate Similarity NPD6674 Discontinued
0.7384 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7376 Intermediate Similarity NPD7930 Approved
0.7368 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.7365 Intermediate Similarity NPD3748 Approved
0.7365 Intermediate Similarity NPD2799 Discontinued
0.7358 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7356 Intermediate Similarity NPD1653 Approved
0.7345 Intermediate Similarity NPD5760 Phase 2
0.7345 Intermediate Similarity NPD5761 Phase 2
0.7337 Intermediate Similarity NPD7286 Phase 2
0.7333 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.731 Intermediate Similarity NPD2309 Approved
0.7283 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.7282 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7256 Intermediate Similarity NPD4625 Phase 3
0.725 Intermediate Similarity NPD7585 Approved
0.7246 Intermediate Similarity NPD6651 Approved
0.7241 Intermediate Similarity NPD6273 Approved
0.7229 Intermediate Similarity NPD943 Approved
0.7222 Intermediate Similarity NPD1470 Approved
0.7219 Intermediate Similarity NPD5408 Approved
0.7219 Intermediate Similarity NPD5404 Approved
0.7219 Intermediate Similarity NPD5405 Approved
0.7219 Intermediate Similarity NPD5406 Approved
0.7212 Intermediate Similarity NPD2313 Discontinued
0.7212 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7212 Intermediate Similarity NPD3764 Approved
0.7209 Intermediate Similarity NPD6190 Approved
0.72 Intermediate Similarity NPD7583 Approved
0.7196 Intermediate Similarity NPD7090 Clinical (unspecified phase)
0.7194 Intermediate Similarity NPD8285 Discontinued
0.7189 Intermediate Similarity NPD7893 Clinical (unspecified phase)
0.7186 Intermediate Similarity NPD230 Phase 1
0.7176 Intermediate Similarity NPD1471 Phase 3
0.7163 Intermediate Similarity NPD8366 Approved
0.716 Intermediate Similarity NPD7033 Discontinued
0.715 Intermediate Similarity NPD7999 Approved
0.7136 Intermediate Similarity NPD7680 Approved
0.7135 Intermediate Similarity NPD4287 Approved
0.7126 Intermediate Similarity NPD1613 Approved
0.7126 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7108 Intermediate Similarity NPD1699 Clinical (unspecified phase)
0.7108 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7097 Intermediate Similarity NPD7799 Discontinued
0.7097 Intermediate Similarity NPD7177 Discontinued
0.7093 Intermediate Similarity NPD5698 Clinical (unspecified phase)
0.7088 Intermediate Similarity NPD5537 Clinical (unspecified phase)
0.7077 Intermediate Similarity NPD4363 Phase 3
0.7077 Intermediate Similarity NPD4360 Phase 2
0.7076 Intermediate Similarity NPD2343 Clinical (unspecified phase)
0.7073 Intermediate Similarity NPD2798 Approved
0.7059 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.7056 Intermediate Similarity NPD8067 Phase 3
0.7052 Intermediate Similarity NPD7003 Approved
0.7048 Intermediate Similarity NPD5952 Clinical (unspecified phase)
0.7041 Intermediate Similarity NPD4362 Clinical (unspecified phase)
0.7041 Intermediate Similarity NPD4361 Phase 2

Structure

External Identifiers

PubChem CID   442744
ChEMBL   CHEMBL496999
ZINC  

Physicochemical Properties

Molecular Weight:  402.10
ALogP:  -2.6752
MLogP:  2.67
XLogP:  -0.244
# Rotatable Bonds:  9
Polar Surface Area:  153.75
# H-Bond Aceptor:  6
# H-Bond Donor:  5
# Rings:  4
# Heavy Atoms:  29

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs