Natural Product: NPC19476

Natural Product ID:  NPC19476
Common Name:   5,7-Dihydroxy-8-(3-Methylbutanoyl)-6-(3-Methylbut-2-Enyl)-4-Pentylchromen-2-One
IUPAC Name:   5,7-dihydroxy-8-(3-methylbutanoyl)-6-(3-methylbut-2-enyl)-4-pentylchromen-2-one
Synonyms:  
Molecular Formula:   C24H32O5
Standard InCHIKey:  WPWGYCSQNLHWAN-UHFFFAOYSA-N
Standard InCHI:  InChI=1S/C24H32O5/c1-6-7-8-9-16-13-19(26)29-24-20(16)22(27)17(11-10-14(2)3)23(28)21(24)18(25)12-15(4)5/h10,13,15,27-28H,6-9,11-12H2,1-5H3
Canonical SMILES:  CCCCCc1cc(=O)oc2c1c(O)c(CC=C(C)C)c(c2C(=O)CC(C)C)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO21645 Mammea americana Species Calophyllaceae Eukaryota PMID[21214226]
NPO21645 Mammea americana Species Calophyllaceae Eukaryota Stems PMID[21214226]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT2 Others Unspecified IC50 = 2760 nM 21214226
NPT2 Others Unspecified IC50 = 2710 nM 21214226
NPT396 Cell Line T47D Homo sapiens IC50 = 1360 nM 21214226
NPT306 Cell Line PC-3 Homo sapiens IC50 = 1880 nM 21214226

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC19476 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC241975
0.9925 High Similarity NPC219584
0.9925 High Similarity NPC470083
0.9925 High Similarity NPC199458
0.9925 High Similarity NPC183639
0.985 High Similarity NPC138047
0.985 High Similarity NPC474624
0.985 High Similarity NPC131782
0.9708 High Similarity NPC307895
0.9708 High Similarity NPC470553
0.9638 High Similarity NPC470554
0.9638 High Similarity NPC118059
0.9638 High Similarity NPC288910
0.9638 High Similarity NPC133060
0.9635 High Similarity NPC112829
0.9635 High Similarity NPC470556
0.9568 High Similarity NPC181388
0.9568 High Similarity NPC470910
0.9565 High Similarity NPC470909
0.9565 High Similarity NPC474939
0.9565 High Similarity NPC96216
0.9565 High Similarity NPC184738
0.9565 High Similarity NPC33653
0.9562 High Similarity NPC470555
0.9496 High Similarity NPC178627
0.9496 High Similarity NPC469935
0.9496 High Similarity NPC196137
0.9496 High Similarity NPC1886
0.9493 High Similarity NPC294432
0.9489 High Similarity NPC221173
0.9429 High Similarity NPC470322
0.9429 High Similarity NPC154217
0.9424 High Similarity NPC94794
0.9424 High Similarity NPC470296
0.9424 High Similarity NPC188632
0.9424 High Similarity NPC196459
0.9424 High Similarity NPC112791
0.9424 High Similarity NPC87609
0.9416 High Similarity NPC472343
0.9403 High Similarity NPC470984
0.9398 High Similarity NPC185624
0.9366 High Similarity NPC469932
0.9353 High Similarity NPC472344
0.9353 High Similarity NPC36181
0.9338 High Similarity NPC470983
0.9338 High Similarity NPC470982
0.9328 High Similarity NPC470988
0.9296 High Similarity NPC208303
0.9296 High Similarity NPC161864
0.9296 High Similarity NPC469933
0.9265 High Similarity NPC101752
0.9248 High Similarity NPC470987
0.9248 High Similarity NPC21378
0.9225 High Similarity NPC249942
0.9225 High Similarity NPC474108
0.9225 High Similarity NPC177995
0.9225 High Similarity NPC285748
0.9225 High Similarity NPC297886
0.9225 High Similarity NPC140120
0.922 High Similarity NPC71184
0.922 High Similarity NPC206212
0.9209 High Similarity NPC477272
0.9203 High Similarity NPC474487
0.9203 High Similarity NPC470672
0.9203 High Similarity NPC470669
0.9203 High Similarity NPC470668
0.9203 High Similarity NPC474504
0.9203 High Similarity NPC470671
0.9203 High Similarity NPC131130
0.9197 High Similarity NPC470985
0.9197 High Similarity NPC174999
0.9197 High Similarity NPC470989
0.9167 High Similarity NPC470908
0.9167 High Similarity NPC327059
0.9167 High Similarity NPC474735
0.9167 High Similarity NPC321387
0.9155 High Similarity NPC57470
0.9137 High Similarity NPC473209
0.913 High Similarity NPC332594
0.9118 High Similarity NPC108113
0.9118 High Similarity NPC93756
0.9103 High Similarity NPC290671
0.9097 High Similarity NPC19238
0.9091 High Similarity NPC180477
0.9085 High Similarity NPC469953
0.9071 High Similarity NPC307990
0.9071 High Similarity NPC16455
0.9071 High Similarity NPC471587
0.9065 High Similarity NPC36414
0.9058 High Similarity NPC268081
0.9058 High Similarity NPC156910
0.9051 High Similarity NPC125920
0.9048 High Similarity NPC469934
0.9044 High Similarity NPC285054
0.9044 High Similarity NPC10971
0.9034 High Similarity NPC158866
0.9007 High Similarity NPC282300
0.9007 High Similarity NPC316911
0.9007 High Similarity NPC316560
0.9 High Similarity NPC220062
0.9 High Similarity NPC301217
0.9 High Similarity NPC217186
0.9 High Similarity NPC303633
0.9 High Similarity NPC472515
0.9 High Similarity NPC470986
0.9 High Similarity NPC23257
0.9 High Similarity NPC53181
0.9 High Similarity NPC139554
0.9 High Similarity NPC55018
0.9 High Similarity NPC216978
0.9 High Similarity NPC96565
0.9 High Similarity NPC240305
0.8993 High Similarity NPC255801
0.8993 High Similarity NPC322301
0.8993 High Similarity NPC38153
0.8993 High Similarity NPC253616
0.8986 High Similarity NPC60667
0.8978 High Similarity NPC16197
0.8973 High Similarity NPC209142
0.8973 High Similarity NPC312549
0.8966 High Similarity NPC164205
0.8966 High Similarity NPC104236
0.8951 High Similarity NPC326500
0.8951 High Similarity NPC29577
0.8944 High Similarity NPC276565
0.8944 High Similarity NPC321148
0.8944 High Similarity NPC326193
0.8944 High Similarity NPC323884
0.8944 High Similarity NPC321629
0.8944 High Similarity NPC204469
0.8936 High Similarity NPC261227
0.8936 High Similarity NPC159275
0.8936 High Similarity NPC172986
0.8936 High Similarity NPC270883
0.8936 High Similarity NPC241100
0.8929 High Similarity NPC201395
0.8929 High Similarity NPC248995
0.8929 High Similarity NPC180501
0.8929 High Similarity NPC268178
0.8929 High Similarity NPC272844
0.8929 High Similarity NPC254168
0.8929 High Similarity NPC54820
0.8913 High Similarity NPC236974
0.8913 High Similarity NPC144027
0.8905 High Similarity NPC215875
0.8905 High Similarity NPC25937
0.8905 High Similarity NPC15834
0.8904 High Similarity NPC151973
0.8904 High Similarity NPC180351
0.8897 High Similarity NPC105415
0.8897 High Similarity NPC37139
0.8897 High Similarity NPC270369
0.8897 High Similarity NPC5515
0.8897 High Similarity NPC472345
0.8889 High Similarity NPC237208
0.8881 High Similarity NPC11700
0.8881 High Similarity NPC219915
0.8881 High Similarity NPC24821
0.8881 High Similarity NPC190637
0.8881 High Similarity NPC212932
0.8881 High Similarity NPC293053
0.8881 High Similarity NPC18886
0.8881 High Similarity NPC9117
0.8873 High Similarity NPC111201
0.8873 High Similarity NPC110969
0.8873 High Similarity NPC205006
0.8873 High Similarity NPC156590
0.8873 High Similarity NPC201820
0.8873 High Similarity NPC118840
0.8873 High Similarity NPC147688
0.8873 High Similarity NPC64908
0.8865 High Similarity NPC18260
0.8865 High Similarity NPC78913
0.8865 High Similarity NPC270913
0.8859 High Similarity NPC109967
0.8859 High Similarity NPC78554
0.8859 High Similarity NPC474609
0.8859 High Similarity NPC474738
0.8859 High Similarity NPC321372
0.8859 High Similarity NPC475797
0.8859 High Similarity NPC469936
0.8859 High Similarity NPC129053
0.8849 High Similarity NPC151113
0.8836 High Similarity NPC291049
0.8836 High Similarity NPC233267
0.8836 High Similarity NPC6923
0.8832 High Similarity NPC31872
0.8832 High Similarity NPC473584
0.8832 High Similarity NPC475589
0.8832 High Similarity NPC27490
0.8819 High Similarity NPC235217
0.8819 High Similarity NPC311741
0.8819 High Similarity NPC216538
0.8819 High Similarity NPC473014
0.8819 High Similarity NPC271288
0.8819 High Similarity NPC134621
0.8819 High Similarity NPC312789
0.8819 High Similarity NPC224714
0.8819 High Similarity NPC234629
0.8819 High Similarity NPC273538

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC19476 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8819 High Similarity NPD4378 Clinical (unspecified phase)
0.8732 High Similarity NPD2800 Approved
0.8705 High Similarity NPD6651 Approved
0.869 High Similarity NPD7410 Clinical (unspecified phase)
0.8662 High Similarity NPD970 Clinical (unspecified phase)
0.8601 High Similarity NPD1243 Approved
0.8562 High Similarity NPD2533 Approved
0.8562 High Similarity NPD2532 Approved
0.8562 High Similarity NPD2534 Approved
0.8553 High Similarity NPD7075 Discontinued
0.8477 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.8477 Intermediate Similarity NPD7819 Suspended
0.8467 Intermediate Similarity NPD7411 Suspended
0.8421 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.8333 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.8333 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.8322 Intermediate Similarity NPD1510 Phase 2
0.8298 Intermediate Similarity NPD1240 Approved
0.8289 Intermediate Similarity NPD6801 Discontinued
0.8288 Intermediate Similarity NPD3750 Approved
0.8276 Intermediate Similarity NPD1549 Phase 2
0.8264 Intermediate Similarity NPD2796 Approved
0.8247 Intermediate Similarity NPD7768 Phase 2
0.8243 Intermediate Similarity NPD6799 Approved
0.8235 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.82 Intermediate Similarity NPD920 Approved
0.8194 Intermediate Similarity NPD2799 Discontinued
0.8182 Intermediate Similarity NPD1607 Approved
0.8176 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.8158 Intermediate Similarity NPD4380 Phase 2
0.8156 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.8121 Intermediate Similarity NPD1511 Approved
0.8113 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.8112 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.8112 Intermediate Similarity NPD5124 Phase 1
0.8095 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.8077 Intermediate Similarity NPD3749 Approved
0.8067 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.8041 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.8041 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.8039 Intermediate Similarity NPD6599 Discontinued
0.8029 Intermediate Similarity NPD422 Phase 1
0.8028 Intermediate Similarity NPD2313 Discontinued
0.8014 Intermediate Similarity NPD1551 Phase 2
0.8014 Intermediate Similarity NPD2935 Discontinued
0.8013 Intermediate Similarity NPD1512 Approved
0.8 Intermediate Similarity NPD2801 Approved
0.7971 Intermediate Similarity NPD9717 Approved
0.7963 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.7962 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.795 Intermediate Similarity NPD7473 Discontinued
0.7949 Intermediate Similarity NPD3817 Phase 2
0.7945 Intermediate Similarity NPD3748 Approved
0.7935 Intermediate Similarity NPD1934 Approved
0.7929 Intermediate Similarity NPD1203 Approved
0.7902 Intermediate Similarity NPD3268 Approved
0.7875 Intermediate Similarity NPD5710 Approved
0.7875 Intermediate Similarity NPD5711 Approved
0.7866 Intermediate Similarity NPD5953 Discontinued
0.7853 Intermediate Similarity NPD7286 Phase 2
0.7812 Intermediate Similarity NPD6959 Discontinued
0.7801 Intermediate Similarity NPD2797 Approved
0.7799 Intermediate Similarity NPD919 Approved
0.7785 Intermediate Similarity NPD3882 Suspended
0.777 Intermediate Similarity NPD6099 Approved
0.777 Intermediate Similarity NPD6100 Approved
0.7764 Intermediate Similarity NPD6232 Discontinued
0.7762 Intermediate Similarity NPD6832 Phase 2
0.7742 Intermediate Similarity NPD3226 Approved
0.7727 Intermediate Similarity NPD5403 Approved
0.7673 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7665 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.7655 Intermediate Similarity NPD1296 Phase 2
0.7636 Intermediate Similarity NPD7054 Approved
0.76 Intermediate Similarity NPD2344 Approved
0.76 Intermediate Similarity NPD2346 Discontinued
0.7597 Intermediate Similarity NPD5401 Approved
0.759 Intermediate Similarity NPD7472 Approved
0.759 Intermediate Similarity NPD7074 Phase 3
0.7584 Intermediate Similarity NPD4308 Phase 3
0.7576 Intermediate Similarity NPD3818 Discontinued
0.7566 Intermediate Similarity NPD4628 Phase 3
0.7561 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7561 Intermediate Similarity NPD6166 Phase 2
0.7561 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7552 Intermediate Similarity NPD3266 Approved
0.7552 Intermediate Similarity NPD3267 Approved
0.7534 Intermediate Similarity NPD411 Approved
0.7531 Intermediate Similarity NPD5494 Approved
0.753 Intermediate Similarity NPD5844 Phase 1
0.75 Intermediate Similarity NPD2798 Approved
0.75 Intermediate Similarity NPD7251 Discontinued
0.75 Intermediate Similarity NPD5402 Approved
0.75 Intermediate Similarity NPD6559 Discontinued
0.75 Intermediate Similarity NPD447 Suspended
0.7483 Intermediate Similarity NPD3225 Approved
0.7467 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.7467 Intermediate Similarity NPD7033 Discontinued
0.7465 Intermediate Similarity NPD1608 Approved
0.7456 Intermediate Similarity NPD7808 Phase 3
0.7456 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.744 Intermediate Similarity NPD6797 Phase 2
0.7438 Intermediate Similarity NPD1465 Phase 2
0.7421 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7415 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7403 Intermediate Similarity NPD2309 Approved
0.7386 Intermediate Similarity NPD2654 Approved
0.7383 Intermediate Similarity NPD230 Phase 1
0.7357 Intermediate Similarity NPD9545 Approved
0.7345 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7338 Intermediate Similarity NPD9493 Approved
0.7315 Intermediate Similarity NPD943 Approved
0.7315 Intermediate Similarity NPD4307 Phase 2
0.7308 Intermediate Similarity NPD7390 Discontinued
0.7297 Intermediate Similarity NPD1699 Clinical (unspecified phase)
0.7296 Intermediate Similarity NPD7458 Discontinued
0.7284 Intermediate Similarity NPD4288 Approved
0.7279 Intermediate Similarity NPD1008 Clinical (unspecified phase)
0.7279 Intermediate Similarity NPD4908 Phase 1
0.7273 Intermediate Similarity NPD1247 Approved
0.7267 Intermediate Similarity NPD1899 Clinical (unspecified phase)
0.726 Intermediate Similarity NPD1019 Discontinued
0.7255 Intermediate Similarity NPD6005 Phase 3
0.7255 Intermediate Similarity NPD6004 Phase 3
0.7255 Intermediate Similarity NPD6002 Phase 3
0.7255 Intermediate Similarity NPD2343 Clinical (unspecified phase)
0.7255 Intermediate Similarity NPD6003 Clinical (unspecified phase)
0.7255 Intermediate Similarity NPD6006 Clinical (unspecified phase)
0.7254 Intermediate Similarity NPD17 Approved
0.7235 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7232 Intermediate Similarity NPD4360 Phase 2
0.7232 Intermediate Similarity NPD4363 Phase 3
0.7229 Intermediate Similarity NPD7229 Phase 3
0.72 Intermediate Similarity NPD4287 Approved
0.7192 Intermediate Similarity NPD1164 Approved
0.7191 Intermediate Similarity NPD4362 Clinical (unspecified phase)
0.7191 Intermediate Similarity NPD4361 Phase 2
0.719 Intermediate Similarity NPD5406 Approved
0.719 Intermediate Similarity NPD5405 Approved
0.719 Intermediate Similarity NPD5408 Approved
0.719 Intermediate Similarity NPD5404 Approved
0.7172 Intermediate Similarity NPD4749 Approved
0.717 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7153 Intermediate Similarity NPD1610 Phase 2
0.7152 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7152 Intermediate Similarity NPD6355 Discontinued
0.7143 Intermediate Similarity NPD6585 Discontinued
0.7115 Intermediate Similarity NPD7003 Approved
0.7113 Intermediate Similarity NPD1548 Phase 1
0.7107 Intermediate Similarity NPD5049 Phase 3
0.7099 Intermediate Similarity NPD5890 Approved
0.7099 Intermediate Similarity NPD5889 Approved
0.7083 Intermediate Similarity NPD3926 Phase 2
0.7081 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7076 Intermediate Similarity NPD1729 Discontinued
0.7067 Intermediate Similarity NPD6410 Clinical (unspecified phase)
0.7067 Intermediate Similarity NPD3764 Approved
0.7063 Intermediate Similarity NPD4196 Clinical (unspecified phase)
0.7059 Intermediate Similarity NPD7893 Clinical (unspecified phase)
0.7051 Intermediate Similarity NPD1652 Phase 2
0.7041 Intermediate Similarity NPD2403 Approved
0.7039 Intermediate Similarity NPD1933 Approved
0.7034 Intermediate Similarity NPD1547 Clinical (unspecified phase)
0.7022 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7011 Intermediate Similarity NPD8312 Approved
0.7011 Intermediate Similarity NPD8313 Approved
0.7 Intermediate Similarity NPD4625 Phase 3
0.6994 Remote Similarity NPD6104 Discontinued
0.6986 Remote Similarity NPD1481 Phase 2
0.6981 Remote Similarity NPD6143 Clinical (unspecified phase)
0.6974 Remote Similarity NPD4060 Phase 1
0.6968 Remote Similarity NPD4476 Approved
0.6968 Remote Similarity NPD4477 Approved
0.6964 Remote Similarity NPD7199 Phase 2
0.6962 Remote Similarity NPD2354 Approved
0.6954 Remote Similarity NPD6798 Discontinued
0.6941 Remote Similarity NPD7784 Clinical (unspecified phase)
0.6933 Remote Similarity NPD2614 Approved
0.6918 Remote Similarity NPD6666 Approved
0.6918 Remote Similarity NPD1535 Discovery
0.6918 Remote Similarity NPD6667 Approved
0.691 Remote Similarity NPD8397 Clinical (unspecified phase)
0.6908 Remote Similarity NPD8032 Phase 2
0.6903 Remote Similarity NPD651 Clinical (unspecified phase)
0.6898 Remote Similarity NPD7584 Approved
0.6897 Remote Similarity NPD4626 Approved
0.6897 Remote Similarity NPD1778 Approved
0.6894 Remote Similarity NPD6273 Approved
0.6893 Remote Similarity NPD8434 Phase 2
0.6892 Remote Similarity NPD1283 Approved
0.6884 Remote Similarity NPD74 Approved
0.6884 Remote Similarity NPD9266 Approved
0.6882 Remote Similarity NPD7184 Clinical (unspecified phase)
0.6879 Remote Similarity NPD1241 Discontinued
0.6875 Remote Similarity NPD7837 Clinical (unspecified phase)
0.6875 Remote Similarity NPD1894 Discontinued
0.6871 Remote Similarity NPD3972 Approved
0.6871 Remote Similarity NPD9269 Phase 2
0.6867 Remote Similarity NPD1530 Clinical (unspecified phase)
0.6867 Remote Similarity NPD2296 Approved

Structure

External Identifiers

PubChem CID   53318796
ChEMBL   CHEMBL1689179
ZINC  

Physicochemical Properties

Molecular Weight:  400.22
ALogP:  0.6248
MLogP:  3.55
XLogP:  5.533
# Rotatable Bonds:  16
Polar Surface Area:  83.83
# H-Bond Aceptor:  2
# H-Bond Donor:  2
# Rings:  2
# Heavy Atoms:  29

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
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