Structure

Physi-Chem Properties

Molecular Weight:  882.16
Volume:  824.203
LogP:  3.83
LogD:  1.49
LogS:  -4.716
# Rotatable Bonds:  9
TPSA:  354.28
# H-Bond Aceptor:  20
# H-Bond Donor:  14
# Rings:  8
# Heavy Atoms:  20

MedChem Properties

QED Drug-Likeness Score:  0.074
Synthetic Accessibility Score:  5.179
Fsp3:  0.136
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  1
Golden Triangle Rule:  Rejected
Chelating Alert:  1
PAINS Alert:  1

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -7.258
MDCK Permeability:  3.004945483553456e-06
Pgp-inhibitor:  0.203
Pgp-substrate:  0.0
Human Intestinal Absorption (HIA):  0.997
20% Bioavailability (F20%):  1.0
30% Bioavailability (F30%):  1.0

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.0
Plasma Protein Binding (PPB):  85.51954650878906%
Volume Distribution (VD):  0.061
Pgp-substrate:  19.05828857421875%

ADMET: Metabolism

CYP1A2-inhibitor:  0.292
CYP1A2-substrate:  0.05
CYP2C19-inhibitor:  0.04
CYP2C19-substrate:  0.02
CYP2C9-inhibitor:  0.38
CYP2C9-substrate:  0.176
CYP2D6-inhibitor:  0.0
CYP2D6-substrate:  0.132
CYP3A4-inhibitor:  0.017
CYP3A4-substrate:  0.055

ADMET: Excretion

Clearance (CL):  13.548
Half-life (T1/2):  0.919

ADMET: Toxicity

hERG Blockers:  0.016
Human Hepatotoxicity (H-HT):  0.478
Drug-inuced Liver Injury (DILI):  0.982
AMES Toxicity:  0.1
Rat Oral Acute Toxicity:  0.115
Maximum Recommended Daily Dose:  0.472
Skin Sensitization:  0.973
Carcinogencity:  0.019
Eye Corrosion:  0.003
Eye Irritation:  0.952
Respiratory Toxicity:  0.001

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General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC98583

Natural Product ID:  NPC98583
Common Name*:   Procyanidin B-2 3,3'-Di-O-Gallate
IUPAC Name:   [(2R,3R)-2-(3,4-dihydroxyphenyl)-8-[(2R,3R,4R)-2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-3-(3,4,5-trihydroxybenzoyl)oxy-3,4-dihydro-2H-chromen-4-yl]-5,7-dihydroxy-3,4-dihydro-2H-chromen-3-yl] 3,4,5-trihydroxybenzoate
Synonyms:  
Standard InCHIKey:  KTLUHRSHFRODPS-RIQPQZJCSA-N
Standard InCHI:  InChI=1S/C44H34O20/c45-19-11-26(51)34-32(12-19)61-40(16-2-4-22(47)25(50)6-16)42(64-44(60)18-9-30(55)38(58)31(56)10-18)36(34)35-27(52)14-23(48)20-13-33(62-43(59)17-7-28(53)37(57)29(54)8-17)39(63-41(20)35)15-1-3-21(46)24(49)5-15/h1-12,14,33,36,39-40,42,45-58H,13H2/t33-,36-,39-,40-,42-/m1/s1
SMILES:  Oc1cc(O)c2c(c1)O[C@@H]([C@@H]([C@H]2c1c(O)cc(c2c1O[C@@H]([C@@H](C2)OC(=O)c1cc(O)c(c(c1)O)O)c1ccc(c(c1)O)O)O)OC(=O)c1cc(O)c(c(c1)O)O)c1ccc(c(c1)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL39504
PubChem CID:   124016
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0000334] Flavonoids
        • [CHEMONTID:0001586] Biflavonoids and polyflavonoids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. Nigeria(latitude 80°N and longitude 4°E) 2005; 2006 DOI[10.1002/ejlt.201000080]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. DOI[10.1007/s11306-010-0259-y]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. DOI[10.1007/s11306-014-0638-x]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. DOI[10.1007/s11746-997-0093-1]
NPO14685 Swertia franchetiana Species Gentianaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.bse.2004.02.008]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.phytol.2008.07.007]
NPO26266 Isodon japonicus Species Lamiaceae Eukaryota n.a. n.a. n.a. DOI[10.1039/C39730000707]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota Seeds Plovdiv, Plovdiv region in South Bulgaria DOI[10.1051/CTV/20163101031]
NPO947 Rauvolfia vomitoria Species Apocynaceae Eukaryota n.a. n.a. n.a. DOI[10.1080/01496395.2011.635623]
NPO21244 Delphinium nuttallianum Species Ranunculaceae Eukaryota n.a. n.a. n.a. PMID[10978210]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. PMID[11170689]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. leaf n.a. PMID[11312782]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. fruit n.a. PMID[11312782]
NPO15659 Zanthoxylum tetraspermum Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[11324918]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. PMID[11408943]
NPO25769 Heterotheca inuloides Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[11473412]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. fruit n.a. PMID[12105962]
NPO26327 Chaenomeles sinensis Species Rosaceae Eukaryota n.a. n.a. n.a. PMID[14600382]
NPO15063 Leathesia nana Species Chordariaceae Eukaryota n.a. n.a. n.a. PMID[15497936]
NPO26927 Salacia madagascariensis Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[15730255]
NPO26927 Salacia madagascariensis Species Celastraceae Eukaryota n.a. root n.a. PMID[15730255]
NPO9516 Gnetum latifolium Species Gnetaceae Eukaryota stem bark Veikabu bridge along the Hiritano highway 40 km from Port Moresby, Papua New Guinea 1998-FEB PMID[16038553]
NPO6160 Vaccinium oxycoccos Species Ericaceae Eukaryota n.a. fruit n.a. PMID[16417304]
NPO25870 Vaccinium vitis-idaea Species Ericaceae Eukaryota n.a. fruit n.a. PMID[16417304]
NPO26834 Eutypella scoparia Species Diatrypaceae Eukaryota n.a. n.a. n.a. PMID[16724861]
NPO26211 Knightia excelsa Species Proteaceae Eukaryota n.a. n.a. n.a. PMID[17315967]
NPO26266 Isodon japonicus Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[18491868]
NPO21244 Delphinium nuttallianum Species Ranunculaceae Eukaryota n.a. n.a. n.a. PMID[19012276]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. Esuela Tecnica Superior de Ingenieros Agrónomos de Albacete 2007 PMID[19256538]
NPO11917 Asterospicularia laurae Species Xeniidae Eukaryota n.a. n.a. n.a. PMID[19863101]
NPO26507 Galenia africana Species Aizoaceae Eukaryota leaf n.a. n.a. PMID[20035557]
NPO17094 Sinularia depressa Species Alcyoniidae Eukaryota n.a. n.a. n.a. PMID[20121250]
NPO26654 Penicillium citreonigrum Species Aspergillaceae Eukaryota n.a. atlantic-forest-soil n.a. PMID[20450206]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. PMID[20826702]
NPO4181 Pseudoalteromonas luteoviolacea Species Pseudoalteromonadaceae Bacteria n.a. n.a. n.a. PMID[20973551]
NPO26834 Eutypella scoparia Species Diatrypaceae Eukaryota n.a. n.a. n.a. PMID[21302965]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[21800857]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. PMID[22537213]
NPO17094 Sinularia depressa Species Alcyoniidae Eukaryota n.a. Hainan soft coral n.a. PMID[23357636]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. PMID[23759170]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota Stalks n.a. n.a. PMID[24521157]
NPO19996 Caulerpa peltata Species Caulerpaceae Eukaryota n.a. n.a. n.a. PMID[25593390]
NPO13847 Streptomyces avermectinius Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25611131]
NPO26327 Chaenomeles sinensis Species Rosaceae Eukaryota Twigs n.a. n.a. PMID[25894905]
NPO25769 Heterotheca inuloides Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[26566007]
NPO26451 Ophiocoma scolopendrina Species Ophiocomidae Eukaryota n.a. n.a. n.a. PMID[27684202]
NPO26327 Chaenomeles sinensis Species Rosaceae Eukaryota Twigs n.a. n.a. PMID[28358502]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota Seeds Benedictine Pannonhalma Archabbey, Hungary PMID[29803478]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. PMID[31433178]
NPO13847 Streptomyces avermectinius Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[464561]
NPO26927 Salacia madagascariensis Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[7288445]
NPO14685 Swertia franchetiana Species Gentianaceae Eukaryota n.a. n.a. n.a. PMID[7513747]
NPO14685 Swertia franchetiana Species Gentianaceae Eukaryota n.a. n.a. n.a. PMID[7561895]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota Roots n.a. Database[FooDB]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota Fruits n.a. Database[FooDB]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota Leaf Essent. Oil n.a. n.a. Database[FooDB]
NPO25870 Vaccinium vitis-idaea Species Ericaceae Eukaryota Fruits n.a. Database[FooDB]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota Root n.a. n.a. Database[FooDB]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota Root Essent. Oil n.a. n.a. Database[FooDB]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota Stem n.a. n.a. Database[FooDB]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. Database[FooDB]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO6160 Vaccinium oxycoccos Species Ericaceae Eukaryota n.a. n.a. Database[FooDB]
NPO25870 Vaccinium vitis-idaea Species Ericaceae Eukaryota n.a. n.a. Database[FooDB]
NPO17336 Benincasa hispida Species Cucurbitaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO17336 Benincasa hispida Species Cucurbitaceae Eukaryota n.a. n.a. Database[FooDB]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO20144 Lespedeza tomentosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26134 Epimedium davidii Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO20881 Rheum officinale Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO20490 Erythrophleum ivorense Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14685 Swertia franchetiana Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26327 Chaenomeles sinensis Species Rosaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13167 Scutellaria amoena Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO947 Rauvolfia vomitoria Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO17336 Benincasa hispida Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28024 Rheum palmatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7632 Rheum tanguticum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25870 Vaccinium vitis-idaea Species Ericaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26917 Quercus rubra Species Fagaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. Database[MetaboLights]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO6160 Vaccinium oxycoccos Species Ericaceae Eukaryota Fruits n.a. Database[Phenol-Explorer]
NPO26134 Epimedium davidii Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20490 Erythrophleum ivorense Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26699 Leonurus glaucescens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5510 Lepidium draba Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25870 Vaccinium vitis-idaea Species Ericaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22505 Bombax ceiba Species Malvaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21691 Dillenia indica Species Dilleniaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17336 Benincasa hispida Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO947 Rauvolfia vomitoria Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26349 Frullania tamarisci Species Frullaniaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16857 Hypericum laricifolium Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2228 Photinia serratifolia Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26917 Quercus rubra Species Fagaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26327 Chaenomeles sinensis Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9516 Gnetum latifolium Species Gnetaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11641 Solanum laxum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14685 Swertia franchetiana Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13754 Tanacetum coccineum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20144 Lespedeza tomentosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28024 Rheum palmatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17018 Salvia greggii Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7632 Rheum tanguticum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13167 Scutellaria amoena Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20881 Rheum officinale Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17336 Benincasa hispida Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28024 Rheum palmatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO25972 Eupolyphaga sinensis Species Corydiidae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO7632 Rheum tanguticum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO13167 Scutellaria amoena Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO5510 Lepidium draba Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO20881 Rheum officinale Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO20490 Erythrophleum ivorense Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28024 Rheum palmatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO7632 Rheum tanguticum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO20881 Rheum officinale Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO26327 Chaenomeles sinensis Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO17336 Benincasa hispida Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO25238 Rheum coreanum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO17633 Viguiera incana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17336 Benincasa hispida Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20947 Tagetes filifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11538 Salvia syriaca Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17702 Astragalus sempervirens Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28024 Rheum palmatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26607 Colobocentrotus atratus Species Echinidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13454 Amphorogyne spicata Species Amphorogynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26507 Galenia africana Species Aizoaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16369 Lepisorus ussuriensis Species Polypodiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4181 Pseudoalteromonas luteoviolacea Species Pseudoalteromonadaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO17568 Balanophora laxiflora Species Balanophoraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21112 Chaetomium carinthiacum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13167 Scutellaria amoena Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4325 Blastochloris viridis Species Hyphomicrobiaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO15227 Helipterum roseum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17242 Laurencia spectabilis Species Rhodomelaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20753 Grangea maderaspatana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7562 Premna odorata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15552 Anacystis montana n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO25923 Vismia jefensis Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14248 Mandragora autumnalis Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26287 Spodoptera eridania Species 0ctuidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16731 Phoebe pittieri Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25739 Erysimum odoratum Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26584 Gnidia lamprantha Species Thymelaeaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7632 Rheum tanguticum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25769 Heterotheca inuloides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15659 Zanthoxylum tetraspermum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19232 Anchusa azurea Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9516 Gnetum latifolium Species Gnetaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17865 Amathia pinnata Species Vesiculariidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26023 Angelica tarokoensis Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15803 Artemisia assoana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20881 Rheum officinale Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26134 Epimedium davidii Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25238 Rheum coreanum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10216 Leptocereus quadricostatus Species Cactaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26834 Eutypella scoparia Species Diatrypaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8506 Cotyledon secunda Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13246 Pinalia stricta Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26699 Leonurus glaucescens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16142 Verbascum thapsiforme Species Scrophulariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17856 Anaphalis lactea Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2898 Quercus sessiliflora Species Fagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11917 Asterospicularia laurae Species Xeniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17472 Drechslera avenae Species Pleosporaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20353 Degenia velebitica Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25972 Eupolyphaga sinensis Species Corydiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26211 Knightia excelsa Species Proteaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26950 Maba buxifolia Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26561 Micromeria pineolens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20560 Polyporus betulinus Species Polyporaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22505 Bombax ceiba Species Malvaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17169 Adiantum lunulatum Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13407 Goniothalamus malayanus Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19671 Dipsacus azureus Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16857 Hypericum laricifolium Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19818 Jacquemontia paniculata Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15467 Hedysarum connatum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26349 Frullania tamarisci Species Frullaniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26406 Saussurea carthamoides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13754 Tanacetum coccineum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26654 Penicillium citreonigrum Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12108 Aizopsis selskiana Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17018 Salvia greggii Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26393.1 Petunia integrifolia subsp. inflata Subspecies Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14395 Lysimachia mauritiana Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6881 Caragana aurantiaca Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18144 Metrodorea nigra Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20490 Erythrophleum ivorense Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13847 Streptomyces avermectinius Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO6160 Vaccinium oxycoccos Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25949 Streptomyces griseovariabilis Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO3964 Calostephane divaricata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20625 Delphinium virgatum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24407 Bipolaris heveae Species Pleosporaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25896 Bragantia wallichii n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO17786 Marrubium anisodon Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17942 Wikstroemia retusa Species Thymelaeaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18022 Naucleopsis ternstroemiiflora Species Moraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22675 Helichrysum chionosphaerum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26374 Alangium premnifolium Species Cornaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16611 Alstonia spathulata Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21376 Lupinus corymbosus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26319 Solanum acaule Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26900 Vallota purpurea n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO2507 Rumex maritimus Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26327 Chaenomeles sinensis Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15422 Carduus tenuiflorus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10359 Chaiturus marrubiastrum Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18867 Stephanitis takeyai Species Tingidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15063 Leathesia nana Species Chordariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10417 Ipomoea digitata Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26161 Globba malaccensis Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19996 Caulerpa peltata Species Caulerpaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19512 Gleichenia quadripartita Species Gleicheniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19395 Nepeta granatensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25995 Laurencia distichophylla Species Rhodomelaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16089 Dumortiera hirsuta Species Dumortieraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14800 Oophaga granulifera Species Dendrobatidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20844 Sphaerella rosigena n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO12703 Eucalyptus melliodora Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17544 Acacia adunca Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26624 Ilex amara Species Aquifoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25870 Vaccinium vitis-idaea Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20144 Lespedeza tomentosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20422 Albizia myriophylla Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16493 Nasutitermes ephratae Species Termitoidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19037 Senecio praecox Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5510 Lepidium draba Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26806 Nidula candida Species Nidulariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11641 Solanum laxum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14932.1 Dalbergia lanceolaria subsp. paniculata Subspecies Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO947 Rauvolfia vomitoria Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26184 Diphasia angolensis Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20223 Rosa pomifera Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27737 Penicillium shearii Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17400 Peltostigma guatemalense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11580 Onobrychis arenaria Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7447 Nemalion vermiculare Species Liagoraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18287 Penicillium bilaiae Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17094 Sinularia depressa Species Alcyoniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26451 Ophiocoma scolopendrina Species Ophiocomidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21564 Senecio behnii Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16572 Rhododendron dahuricum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14859 Bishovia boliviensis n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO19913 Rhynchophorus ferrugineus Species Curculionidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26917 Quercus rubra Species Fagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14685 Swertia franchetiana Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10989 Annona cornifolia Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21691 Dillenia indica Species Dilleniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25792 Delphinium andersoni Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21724 Sabina sargentii n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO26927 Salacia madagascariensis Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2228 Photinia serratifolia Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26266 Isodon japonicus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21244 Delphinium nuttallianum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26052 Swertia delavayi Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT459 Individual Protein Human immunodeficiency virus type 1 reverse transcriptase Human immunodeficiency virus 1 Inhibition = 0.0 % PMID[451720]
NPT326 Individual Protein Squalene monooxygenase Rattus norvegicus IC50 = 540.0 nM PMID[451722]
NPT672 Cell Line TE-671 Homo sapiens ED50 > 10.0 ug ml-1 PMID[451723]
NPT180 Cell Line HCT-8 Homo sapiens ED50 > 10.0 ug ml-1 PMID[451723]
NPT81 Cell Line A549 Homo sapiens ED50 > 10.0 ug ml-1 PMID[451723]
NPT91 Cell Line KB Homo sapiens ED50 > 10.0 ug ml-1 PMID[451723]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 IC50 > 25000.0 nM PMID[451720]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 14000.0 nM PMID[451720]
NPT27 Others Unspecified Therapeutic index = 1.8 n.a. PMID[451720]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Inhibition = 90.0 % PMID[451720]
NPT316 Protein Family Protein kinase C (PKC) Homo sapiens IC50 = 4000.0 nM PMID[451721]
NPT727 Protein Family Protein kinase C, PKC; classical/novel Homo sapiens Phorbol displacement <= 50.0 uM PMID[451721]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. ED50 = 3.45 ug ml-1 PMID[451723]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC98583 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9938 High Similarity NPC100251
0.9815 High Similarity NPC65333
0.9394 High Similarity NPC180768
0.9329 High Similarity NPC9309
0.9298 High Similarity NPC112380
0.9255 High Similarity NPC156818
0.9255 High Similarity NPC38779
0.9255 High Similarity NPC289322
0.9255 High Similarity NPC160512
0.9255 High Similarity NPC68324
0.9255 High Similarity NPC114179
0.9235 High Similarity NPC117668
0.9235 High Similarity NPC125352
0.9212 High Similarity NPC224851
0.9193 High Similarity NPC291948
0.9193 High Similarity NPC300845
0.9193 High Similarity NPC88803
0.9193 High Similarity NPC250436
0.9193 High Similarity NPC104983
0.9162 High Similarity NPC476365
0.9157 High Similarity NPC473818
0.9146 High Similarity NPC476371
0.9146 High Similarity NPC476372
0.9141 High Similarity NPC53889
0.9141 High Similarity NPC24164
0.9123 High Similarity NPC8940
0.9107 High Similarity NPC257667
0.9107 High Similarity NPC472454
0.9107 High Similarity NPC212038
0.9107 High Similarity NPC271848
0.9107 High Similarity NPC186847
0.9107 High Similarity NPC81332
0.9107 High Similarity NPC262580
0.9107 High Similarity NPC289396
0.9096 High Similarity NPC171985
0.9096 High Similarity NPC320741
0.9091 High Similarity NPC45943
0.9086 High Similarity NPC264302
0.908 High Similarity NPC87317
0.908 High Similarity NPC98083
0.908 High Similarity NPC24339
0.908 High Similarity NPC166456
0.908 High Similarity NPC7543
0.908 High Similarity NPC94220
0.908 High Similarity NPC269046
0.9074 High Similarity NPC318432
0.907 High Similarity NPC132111
0.907 High Similarity NPC129533
0.907 High Similarity NPC123259
0.9059 High Similarity NPC67629
0.9059 High Similarity NPC79736
0.9042 High Similarity NPC217781
0.9024 High Similarity NPC476373
0.9023 High Similarity NPC65489
0.9023 High Similarity NPC237202
0.9017 High Similarity NPC318119
0.9006 High Similarity NPC267549
0.9006 High Similarity NPC265380
0.9006 High Similarity NPC474656
0.9006 High Similarity NPC471789
0.8988 High Similarity NPC107627
0.8988 High Similarity NPC149300
0.8982 High Similarity NPC26536
0.8982 High Similarity NPC142707
0.8982 High Similarity NPC49983
0.8982 High Similarity NPC317671
0.8971 High Similarity NPC223534
0.8971 High Similarity NPC142291
0.8971 High Similarity NPC158214
0.8971 High Similarity NPC7839
0.8971 High Similarity NPC290289
0.8971 High Similarity NPC240200
0.897 High Similarity NPC109061
0.897 High Similarity NPC124747
0.897 High Similarity NPC155754
0.897 High Similarity NPC216916
0.896 High Similarity NPC321916
0.8957 High Similarity NPC165483
0.8953 High Similarity NPC80956
0.8953 High Similarity NPC185275
0.8953 High Similarity NPC324742
0.8922 High Similarity NPC471788
0.8922 High Similarity NPC162169
0.8922 High Similarity NPC142614
0.8922 High Similarity NPC166851
0.8922 High Similarity NPC477840
0.892 High Similarity NPC93065
0.892 High Similarity NPC187632
0.892 High Similarity NPC472720
0.892 High Similarity NPC472724
0.892 High Similarity NPC160543
0.892 High Similarity NPC469652
0.892 High Similarity NPC31208
0.892 High Similarity NPC472721
0.8916 High Similarity NPC12326
0.8916 High Similarity NPC477841
0.8914 High Similarity NPC469649
0.8914 High Similarity NPC260521
0.8908 High Similarity NPC231254
0.8902 High Similarity NPC208797
0.8902 High Similarity NPC53680
0.8882 High Similarity NPC476370
0.8876 High Similarity NPC198125
0.8876 High Similarity NPC658
0.8876 High Similarity NPC477082
0.8876 High Similarity NPC95421
0.8876 High Similarity NPC475212
0.8876 High Similarity NPC476358
0.8876 High Similarity NPC197708
0.887 High Similarity NPC471091
0.887 High Similarity NPC97924
0.887 High Similarity NPC40078
0.8869 High Similarity NPC13481
0.8869 High Similarity NPC43065
0.8869 High Similarity NPC207575
0.8864 High Similarity NPC173872
0.8864 High Similarity NPC119094
0.8862 High Similarity NPC121290
0.8857 High Similarity NPC469650
0.8855 High Similarity NPC139540
0.8855 High Similarity NPC177100
0.8851 High Similarity NPC150977
0.8837 High Similarity NPC472723
0.8837 High Similarity NPC297574
0.8834 High Similarity NPC469888
0.883 High Similarity NPC476374
0.883 High Similarity NPC316539
0.8817 High Similarity NPC261411
0.8817 High Similarity NPC190204
0.8817 High Similarity NPC43918
0.8817 High Similarity NPC260266
0.8814 High Similarity NPC201814
0.8807 High Similarity NPC269625
0.8807 High Similarity NPC179947
0.8802 High Similarity NPC219927
0.8795 High Similarity NPC24627
0.8795 High Similarity NPC98023
0.8795 High Similarity NPC226462
0.8793 High Similarity NPC469371
0.8788 High Similarity NPC322459
0.8788 High Similarity NPC323627
0.8788 High Similarity NPC324358
0.8788 High Similarity NPC318527
0.8788 High Similarity NPC125495
0.8785 High Similarity NPC174140
0.878 High Similarity NPC222185
0.8778 High Similarity NPC3474
0.8772 High Similarity NPC102851
0.8772 High Similarity NPC4200
0.8772 High Similarity NPC47140
0.8772 High Similarity NPC67134
0.8772 High Similarity NPC5786
0.8765 High Similarity NPC300307
0.8757 High Similarity NPC477083
0.8757 High Similarity NPC272560
0.8757 High Similarity NPC473618
0.8757 High Similarity NPC175793
0.8757 High Similarity NPC477081
0.8757 High Similarity NPC471823
0.875 High Similarity NPC475352
0.875 High Similarity NPC63438
0.875 High Similarity NPC261623
0.875 High Similarity NPC67959
0.875 High Similarity NPC229817
0.875 High Similarity NPC473686
0.875 High Similarity NPC475220
0.875 High Similarity NPC111490
0.875 High Similarity NPC221140
0.8743 High Similarity NPC142252
0.8743 High Similarity NPC97119
0.8743 High Similarity NPC135831
0.8743 High Similarity NPC97812
0.8743 High Similarity NPC469889
0.8743 High Similarity NPC297503
0.8736 High Similarity NPC471030
0.8735 High Similarity NPC318826
0.8735 High Similarity NPC114791
0.8735 High Similarity NPC210501
0.8735 High Similarity NPC104222
0.8735 High Similarity NPC141331
0.8727 High Similarity NPC69531
0.8721 High Similarity NPC168789
0.8713 High Similarity NPC47521
0.8712 High Similarity NPC226809
0.8712 High Similarity NPC279406
0.8706 High Similarity NPC470271
0.8706 High Similarity NPC311389
0.8706 High Similarity NPC14662
0.8701 High Similarity NPC72554
0.8701 High Similarity NPC105591
0.8701 High Similarity NPC30011
0.8701 High Similarity NPC47905
0.8701 High Similarity NPC475179
0.8701 High Similarity NPC73929
0.8701 High Similarity NPC97817
0.8701 High Similarity NPC139683
0.8701 High Similarity NPC64755
0.8698 High Similarity NPC473010
0.869 High Similarity NPC476247
0.869 High Similarity NPC473445

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC98583 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9222 High Similarity NPD7993 Clinical (unspecified phase)
0.9193 High Similarity NPD4868 Clinical (unspecified phase)
0.8588 High Similarity NPD6166 Phase 2
0.8588 High Similarity NPD6167 Clinical (unspecified phase)
0.8588 High Similarity NPD6168 Clinical (unspecified phase)
0.8547 High Similarity NPD5844 Phase 1
0.8514 High Similarity NPD8313 Approved
0.8514 High Similarity NPD8312 Approved
0.8494 Intermediate Similarity NPD1465 Phase 2
0.8494 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.8391 Intermediate Similarity NPD7074 Phase 3
0.8391 Intermediate Similarity NPD7472 Approved
0.8372 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.8343 Intermediate Similarity NPD7075 Discontinued
0.8333 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.8333 Intermediate Similarity NPD7054 Approved
0.8324 Intermediate Similarity NPD7473 Discontinued
0.8323 Intermediate Similarity NPD1934 Approved
0.8304 Intermediate Similarity NPD6959 Discontinued
0.8295 Intermediate Similarity NPD7251 Discontinued
0.8284 Intermediate Similarity NPD7768 Phase 2
0.8278 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.8274 Intermediate Similarity NPD7819 Suspended
0.8274 Intermediate Similarity NPD8455 Phase 2
0.8256 Intermediate Similarity NPD6232 Discontinued
0.8249 Intermediate Similarity NPD7808 Phase 3
0.8246 Intermediate Similarity NPD5494 Approved
0.8239 Intermediate Similarity NPD6797 Phase 2
0.8204 Intermediate Similarity NPD4380 Phase 2
0.8171 Intermediate Similarity NPD3818 Discontinued
0.8166 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.8155 Intermediate Similarity NPD7411 Suspended
0.8146 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.8125 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.8068 Intermediate Similarity NPD7228 Approved
0.8059 Intermediate Similarity NPD2801 Approved
0.8023 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.8012 Intermediate Similarity NPD3817 Phase 2
0.8011 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7965 Intermediate Similarity NPD3882 Suspended
0.7952 Intermediate Similarity NPD1511 Approved
0.7927 Intermediate Similarity NPD8151 Discontinued
0.7895 Intermediate Similarity NPD6801 Discontinued
0.7892 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7874 Intermediate Similarity NPD6234 Discontinued
0.7857 Intermediate Similarity NPD1512 Approved
0.7818 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7816 Intermediate Similarity NPD3749 Approved
0.7803 Intermediate Similarity NPD5402 Approved
0.7798 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.779 Intermediate Similarity NPD6559 Discontinued
0.779 Intermediate Similarity NPD7685 Pre-registration
0.7784 Intermediate Similarity NPD7199 Phase 2
0.7771 Intermediate Similarity NPD3750 Approved
0.7758 Intermediate Similarity NPD1549 Phase 2
0.7725 Intermediate Similarity NPD6190 Approved
0.7719 Intermediate Similarity NPD7458 Discontinued
0.7719 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7716 Intermediate Similarity NPD230 Phase 1
0.7706 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7697 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.7697 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7697 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.7692 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7692 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.7692 Intermediate Similarity NPD7240 Approved
0.7688 Intermediate Similarity NPD37 Approved
0.7665 Intermediate Similarity NPD4628 Phase 3
0.7657 Intermediate Similarity NPD4967 Phase 2
0.7657 Intermediate Similarity NPD4965 Approved
0.7657 Intermediate Similarity NPD4966 Approved
0.7654 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7654 Intermediate Similarity NPD1613 Approved
0.7633 Intermediate Similarity NPD6799 Approved
0.7602 Intermediate Similarity NPD5403 Approved
0.7584 Intermediate Similarity NPD8127 Discontinued
0.7581 Intermediate Similarity NPD8150 Discontinued
0.7572 Intermediate Similarity NPD6599 Discontinued
0.756 Intermediate Similarity NPD8166 Discontinued
0.756 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7558 Intermediate Similarity NPD1653 Approved
0.7542 Intermediate Similarity NPD7229 Phase 3
0.7531 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7531 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7516 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7487 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.7487 Intermediate Similarity NPD7783 Phase 2
0.7487 Intermediate Similarity NPD8434 Phase 2
0.7485 Intermediate Similarity NPD5401 Approved
0.7485 Intermediate Similarity NPD2532 Approved
0.7485 Intermediate Similarity NPD2533 Approved
0.7485 Intermediate Similarity NPD2534 Approved
0.7473 Intermediate Similarity NPD3751 Discontinued
0.747 Intermediate Similarity NPD3748 Approved
0.747 Intermediate Similarity NPD1510 Phase 2
0.7456 Intermediate Similarity NPD7003 Approved
0.7453 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7448 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7444 Intermediate Similarity NPD3787 Discontinued
0.744 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.7429 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7427 Intermediate Similarity NPD7390 Discontinued
0.7427 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7425 Intermediate Similarity NPD2935 Discontinued
0.7425 Intermediate Similarity NPD2796 Approved
0.7414 Intermediate Similarity NPD3226 Approved
0.7407 Intermediate Similarity NPD4908 Phase 1
0.7398 Intermediate Similarity NPD7680 Approved
0.7398 Intermediate Similarity NPD7435 Discontinued
0.7384 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.7381 Intermediate Similarity NPD7266 Discontinued
0.7374 Intermediate Similarity NPD919 Approved
0.736 Intermediate Similarity NPD7871 Phase 2
0.736 Intermediate Similarity NPD7870 Phase 2
0.7333 Intermediate Similarity NPD943 Approved
0.7321 Intermediate Similarity NPD1551 Phase 2
0.731 Intermediate Similarity NPD7698 Approved
0.731 Intermediate Similarity NPD7697 Approved
0.731 Intermediate Similarity NPD7696 Phase 3
0.7308 Intermediate Similarity NPD3926 Phase 2
0.7305 Intermediate Similarity NPD7097 Phase 1
0.7303 Intermediate Similarity NPD5353 Approved
0.7283 Intermediate Similarity NPD7177 Discontinued
0.7282 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD8320 Phase 1
0.7273 Intermediate Similarity NPD7549 Discontinued
0.7273 Intermediate Similarity NPD8319 Approved
0.7264 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.7264 Intermediate Similarity NPD7874 Approved
0.7262 Intermediate Similarity NPD2799 Discontinued
0.7258 Intermediate Similarity NPD5953 Discontinued
0.7256 Intermediate Similarity NPD3027 Phase 3
0.725 Intermediate Similarity NPD7701 Phase 2
0.7245 Intermediate Similarity NPD6777 Approved
0.7245 Intermediate Similarity NPD6776 Approved
0.7245 Intermediate Similarity NPD6782 Approved
0.7245 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7245 Intermediate Similarity NPD6780 Approved
0.7245 Intermediate Similarity NPD6778 Approved
0.7245 Intermediate Similarity NPD6781 Approved
0.7245 Intermediate Similarity NPD6779 Approved
0.7243 Intermediate Similarity NPD7286 Phase 2
0.7241 Intermediate Similarity NPD6273 Approved
0.7229 Intermediate Similarity NPD1240 Approved
0.7219 Intermediate Similarity NPD5408 Approved
0.7219 Intermediate Similarity NPD5404 Approved
0.7219 Intermediate Similarity NPD6099 Approved
0.7219 Intermediate Similarity NPD5405 Approved
0.7219 Intermediate Similarity NPD6100 Approved
0.7219 Intermediate Similarity NPD5406 Approved
0.7213 Intermediate Similarity NPD5242 Approved
0.7212 Intermediate Similarity NPD6798 Discontinued
0.72 Intermediate Similarity NPD920 Approved
0.7198 Intermediate Similarity NPD1247 Approved
0.7186 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.7186 Intermediate Similarity NPD6355 Discontinued
0.7186 Intermediate Similarity NPD5124 Phase 1
0.7186 Intermediate Similarity NPD447 Suspended
0.7184 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7176 Intermediate Similarity NPD2346 Discontinued
0.7143 Intermediate Similarity NPD7801 Approved
0.7143 Intermediate Similarity NPD7700 Phase 2
0.7143 Intermediate Similarity NPD1607 Approved
0.7143 Intermediate Similarity NPD9269 Phase 2
0.7143 Intermediate Similarity NPD7699 Phase 2
0.7126 Intermediate Similarity NPD4060 Phase 1
0.7108 Intermediate Similarity NPD2313 Discontinued
0.7108 Intermediate Similarity NPD3764 Approved
0.7093 Intermediate Similarity NPD2800 Approved
0.7085 Intermediate Similarity NPD6823 Phase 2
0.7081 Intermediate Similarity NPD1610 Phase 2
0.7081 Intermediate Similarity NPD8155 Clinical (unspecified phase)
0.7079 Intermediate Similarity NPD7585 Approved
0.7076 Intermediate Similarity NPD2343 Clinical (unspecified phase)
0.7069 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.7066 Intermediate Similarity NPD6233 Phase 2
0.7065 Intermediate Similarity NPD5710 Approved
0.7065 Intermediate Similarity NPD5711 Approved
0.7039 Intermediate Similarity NPD6386 Approved
0.7039 Intermediate Similarity NPD6385 Approved
0.7037 Intermediate Similarity NPD1608 Approved
0.703 Intermediate Similarity NPD7583 Approved
0.703 Intermediate Similarity NPD9494 Approved
0.7017 Intermediate Similarity NPD4288 Approved
0.7016 Intermediate Similarity NPD7090 Clinical (unspecified phase)
0.7012 Intermediate Similarity NPD2797 Approved
0.7006 Intermediate Similarity NPD3268 Approved
0.6994 Remote Similarity NPD1243 Approved
0.6994 Remote Similarity NPD6674 Discontinued
0.699 Remote Similarity NPD6535 Approved
0.699 Remote Similarity NPD6534 Approved
0.6988 Remote Similarity NPD6832 Phase 2
0.6982 Remote Similarity NPD1933 Approved
0.6959 Remote Similarity NPD1509 Clinical (unspecified phase)
0.6959 Remote Similarity NPD4287 Approved
0.6959 Remote Similarity NPD651 Clinical (unspecified phase)
0.6954 Remote Similarity NPD7667 Clinical (unspecified phase)
0.6954 Remote Similarity NPD1878 Clinical (unspecified phase)
0.6947 Remote Similarity NPD7039 Approved
0.6947 Remote Similarity NPD7038 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data