Structure

Physi-Chem Properties

Molecular Weight:  952.08
Volume:  827.927
LogP:  1.541
LogD:  0.415
LogS:  -1.94
# Rotatable Bonds:  3
TPSA:  450.25
# H-Bond Aceptor:  27
# H-Bond Donor:  14
# Rings:  9
# Heavy Atoms:  27

MedChem Properties

QED Drug-Likeness Score:  0.05
Synthetic Accessibility Score:  7.546
Fsp3:  0.22
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  2
Golden Triangle Rule:  Rejected
Chelating Alert:  2
PAINS Alert:  1

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -7.098
MDCK Permeability:  1.1093771718151402e-05
Pgp-inhibitor:  0.371
Pgp-substrate:  0.014
Human Intestinal Absorption (HIA):  0.998
20% Bioavailability (F20%):  1.0
30% Bioavailability (F30%):  1.0

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.002
Plasma Protein Binding (PPB):  82.44242858886719%
Volume Distribution (VD):  0.414
Pgp-substrate:  39.91222381591797%

ADMET: Metabolism

CYP1A2-inhibitor:  0.043
CYP1A2-substrate:  0.004
CYP2C19-inhibitor:  0.01
CYP2C19-substrate:  0.022
CYP2C9-inhibitor:  0.487
CYP2C9-substrate:  0.012
CYP2D6-inhibitor:  0.0
CYP2D6-substrate:  0.056
CYP3A4-inhibitor:  0.018
CYP3A4-substrate:  0.024

ADMET: Excretion

Clearance (CL):  4.294
Half-life (T1/2):  0.893

ADMET: Toxicity

hERG Blockers:  0.021
Human Hepatotoxicity (H-HT):  0.077
Drug-inuced Liver Injury (DILI):  0.997
AMES Toxicity:  0.091
Rat Oral Acute Toxicity:  0.0
Maximum Recommended Daily Dose:  0.005
Skin Sensitization:  0.843
Carcinogencity:  0.01
Eye Corrosion:  0.003
Eye Irritation:  0.854
Respiratory Toxicity:  0.004

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  Natural Product: NPC201814

Natural Product ID:  NPC201814
Common Name*:   Geraniin
IUPAC Name:   n.a.
Synonyms:   Geraniiin; Geraniin
Standard InCHIKey:  JQQBXPCJFAKSPG-SVYIMCMUSA-N
Standard InCHI:  InChI=1S/C41H28O27/c42-13-1-8(2-14(43)24(13)48)34(54)67-39-33-32-30(64-38(58)12-6-19(47)41(61)40(59,60)23(12)22-11(37(57)66-33)5-17(46)27(51)31(22)68-41)18(63-39)7-62-35(55)9-3-15(44)25(49)28(52)20(9)21-10(36(56)65-32)4-16(45)26(50)29(21)53/h1-6,18,23,30,32-33,39,42-46,48-53,59-61H,7H2/t18-,23+,30-,32+,33-,39+,41+/m1/s1
SMILES:  c1c(cc(c(c1O)O)O)C(=O)O[C@H]1[C@H]2[C@@H]3[C@@H]([C@@H](COC(=O)c4cc(c(c(c4-c4c(cc(c(c4O)O)O)C(=O)O3)O)O)O)O1)OC(=O)C1=CC(=O)[C@]3(C([C@@H]1c1c(cc(c(c1O3)O)O)C(=O)O2)(O)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL506069
PubChem CID:   3001497
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0000238] Tannins
        • [CHEMONTID:0001710] Hydrolyzable tannins

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.foodchem.2013.08.121]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota n.a. kernel n.a. PMID[10670815]
NPO25715 Senna siamea Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[10757709]
NPO6039 Aglaia laxiflora Species Meliaceae Eukaryota n.a. n.a. n.a. PMID[10785416]
NPO2130 Ehretia dicksonii Species Ehretiaceae Eukaryota n.a. leaf n.a. PMID[10830513]
NPO2130 Ehretia dicksonii Species Ehretiaceae Eukaryota n.a. twig n.a. PMID[10830513]
NPO2130 Ehretia dicksonii Species Ehretiaceae Eukaryota n.a. n.a. n.a. PMID[10830513]
NPO19369 Bacillus thuringiensis Species Bacillaceae Bacteria n.a. n.a. n.a. PMID[11087590]
NPO8621 Cylindrospermopsis raciborskii Species Aphanizomenonaceae Bacteria n.a. n.a. n.a. PMID[11223086]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. leaf n.a. PMID[11421757]
NPO26880 Mallotus japonicus Species Euphorbiaceae Eukaryota n.a. n.a. n.a. PMID[11520216]
NPO9973 Euphorbia turczaninowii Species Euphorbiaceae Eukaryota n.a. n.a. n.a. PMID[11520228]
NPO28450 Phyllanthus emblica Species Phyllanthaceae Eukaryota n.a. n.a. n.a. PMID[11754604]
NPO23577 Wolfiporia cocos Species Coriolaceae Eukaryota n.a. n.a. n.a. PMID[11975480]
NPO13023 Euphorbia sp. Species Euphorbiaceae Eukaryota n.a. n.a. n.a. PMID[12036352]
NPO6774 Khaya senegalensis Species Meliaceae Eukaryota n.a. n.a. n.a. PMID[12193039]
NPO30634 Acer nikoense Species Sapindaceae Eukaryota n.a. Japan n.a. PMID[12542351]
NPO8621 Cylindrospermopsis raciborskii Species Aphanizomenonaceae Bacteria n.a. n.a. n.a. PMID[14559084]
NPO10729 Lechevalieria aerocolonigenes Species Pseudonocardiaceae Bacteria n.a. n.a. n.a. PMID[15620255]
NPO20003 Phyllanthus niruri Species Phyllanthaceae Eukaryota n.a. n.a. n.a. PMID[15844943]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota leaves Krachong waterfall area, Trang Province, Thailand 2001-APR PMID[15974621]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. leaf n.a. PMID[15974621]
NPO140 Coriaria japonica Species Coriariaceae Eukaryota n.a. fruit n.a. PMID[16079545]
NPO8258 Camellia sinensis Species Theaceae Eukaryota Flowers n.a. n.a. PMID[16180814]
NPO20003 Phyllanthus niruri Species Phyllanthaceae Eukaryota n.a. leaf n.a. PMID[16394535]
NPO8258 Camellia sinensis Species Theaceae Eukaryota seeds Shizuoka prefecture, Japan n.a. PMID[16499314]
NPO21387 Forsythia suspensa Species Oleaceae Eukaryota n.a. n.a. n.a. PMID[17156960]
NPO2798 Geranium thunbergii Species Geraniaceae Eukaryota n.a. whole plant n.a. PMID[17225459]
NPO3453 Elaeocarpus fuscoides Species Elaeocarpaceae Eukaryota leaves n.a. n.a. PMID[17451272]
NPO25715 Senna siamea Species Fabaceae Eukaryota n.a. leaf n.a. PMID[17685627]
NPO26880 Mallotus japonicus Species Euphorbiaceae Eukaryota n.a. n.a. n.a. PMID[1800639]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota Fruits Malatya Fruit Research Institute between the first and third weeks of 2005-Jul. PMID[18038980]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. n.a. n.a. PMID[18068204]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota rhizomes n.a. n.a. PMID[18177011]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. leaf n.a. PMID[18844422]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota leaves n.a. n.a. PMID[18844422]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota n.a. n.a. n.a. PMID[19271742]
NPO28450 Phyllanthus emblica Species Phyllanthaceae Eukaryota Roots Simao city, Yunnan Province, China 2007-MAY PMID[19374435]
NPO23577 Wolfiporia cocos Species Coriolaceae Eukaryota epidermis of the sclerotia n.a. n.a. PMID[19746919]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota n.a. n.a. n.a. PMID[20590154]
NPO22608 Excoecaria agallocha Species Euphorbiaceae Eukaryota n.a. n.a. n.a. PMID[21190854]
NPO1103 Dioscorea japonica Species Dioscoreaceae Eukaryota rhizomes n.a. n.a. PMID[21353549]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. n.a. n.a. PMID[21434603]
NPO13504 Lotus japonicus Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[21510636]
NPO30634 Acer nikoense Species Sapindaceae Eukaryota n.a. n.a. n.a. PMID[21550801]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. flower n.a. PMID[21922925]
NPO8258 Camellia sinensis Species Theaceae Eukaryota flower buds n.a. n.a. PMID[21925888]
NPO22608 Excoecaria agallocha Species Euphorbiaceae Eukaryota stems and twigs Beihai, Guangxi province, China 2008-Jan PMID[22196120]
NPO8258 Camellia sinensis Species Theaceae Eukaryota leaves n.a. n.a. PMID[22377672]
NPO25715 Senna siamea Species Fabaceae Eukaryota Stems n.a. n.a. PMID[23078294]
NPO6774 Khaya senegalensis Species Meliaceae Eukaryota n.a. n.a. n.a. PMID[23210623]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. leaf n.a. PMID[23265489]
NPO26880 Mallotus japonicus Species Euphorbiaceae Eukaryota n.a. pericarp n.a. PMID[2347013]
NPO25715 Senna siamea Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[23513740]
NPO8258 Camellia sinensis Species Theaceae Eukaryota Leaves Bandung, West Java, Indonesia PMID[23621359]
NPO3735 Erythroxylum coca Species Erythroxylaceae Eukaryota n.a. n.a. n.a. PMID[25303034]
NPO8528 Citrus junos Species Rutaceae Eukaryota n.a. fruit n.a. PMID[25522543]
NPO21387 Forsythia suspensa Species Oleaceae Eukaryota n.a. n.a. n.a. PMID[26422318]
NPO23577 Wolfiporia cocos Species Coriolaceae Eukaryota n.a. n.a. n.a. PMID[27808511]
NPO21387 Forsythia suspensa Species Oleaceae Eukaryota Fruits n.a. n.a. PMID[28218000]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. n.a. n.a. PMID[28972755]
NPO14089 Hypericum ascyron Species Hypericaceae Eukaryota n.a. n.a. n.a. PMID[30379546]
NPO14089 Hypericum ascyron Species Hypericaceae Eukaryota n.a. n.a. n.a. PMID[31596079]
NPO26880 Mallotus japonicus Species Euphorbiaceae Eukaryota n.a. n.a. n.a. PMID[3210017]
NPO20003 Phyllanthus niruri Species Phyllanthaceae Eukaryota n.a. n.a. n.a. PMID[3379417]
NPO26880 Mallotus japonicus Species Euphorbiaceae Eukaryota n.a. n.a. n.a. PMID[3734813]
NPO26880 Mallotus japonicus Species Euphorbiaceae Eukaryota n.a. n.a. n.a. PMID[4040956]
NPO20003 Phyllanthus niruri Species Phyllanthaceae Eukaryota n.a. n.a. n.a. PMID[4087921]
NPO22608 Excoecaria agallocha Species Euphorbiaceae Eukaryota n.a. leaf n.a. PMID[7623051]
NPO22608 Excoecaria agallocha Species Euphorbiaceae Eukaryota n.a. twig n.a. PMID[7623051]
NPO22608 Excoecaria agallocha Species Euphorbiaceae Eukaryota n.a. bark n.a. PMID[7623051]
NPO22608 Excoecaria agallocha Species Euphorbiaceae Eukaryota n.a. n.a. n.a. PMID[7623051]
NPO7381 Ircinia spinosula Species Irciniidae Eukaryota n.a. Bay of Naples, Italy n.a. PMID[7714539]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota n.a. n.a. n.a. PMID[8064299]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota n.a. rhizome n.a. PMID[8064299]
NPO23577 Wolfiporia cocos Species Coriolaceae Eukaryota n.a. n.a. n.a. PMID[8984162]
NPO20003 Phyllanthus niruri Species Phyllanthaceae Eukaryota n.a. n.a. n.a. PMID[8991954]
NPO20003 Phyllanthus niruri Species Phyllanthaceae Eukaryota n.a. leaf n.a. PMID[8991954]
NPO3735 Erythroxylum coca Species Erythroxylaceae Eukaryota n.a. leaf n.a. Database[Article]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota Rhizome n.a. n.a. Database[FooDB]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota Root n.a. n.a. Database[FooDB]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO8258 Camellia sinensis Species Theaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO8258 Camellia sinensis Species Theaceae Eukaryota Seed Oil n.a. n.a. Database[FooDB]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. n.a. Database[FooDB]
NPO8258 Camellia sinensis Species Theaceae Eukaryota Shoot n.a. n.a. Database[FooDB]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota n.a. n.a. Database[FooDB]
NPO8258 Camellia sinensis Species Theaceae Eukaryota Stem n.a. n.a. Database[FooDB]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota n.a. n.a. Database[FooDB]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota n.a. n.a. Database[FooDB]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota Fruits n.a. Database[FooDB]
NPO8258 Camellia sinensis Species Theaceae Eukaryota Cotyledon n.a. n.a. Database[FooDB]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. n.a. Database[FooDB]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO8258 Camellia sinensis Species Theaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO8258 Camellia sinensis Species Theaceae Eukaryota Leaf Essent. Oil n.a. n.a. Database[FooDB]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO8258 Camellia sinensis Species Theaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota Resin, Exudate, Sap n.a. n.a. Database[FooDB]
NPO15687 Geranium wilfordii Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12441 Cymbopogon distans Species Poaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18313 Erodium stephanianum Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21387 Forsythia suspensa Species Oleaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28450 Phyllanthus emblica Species Phyllanthaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22608 Excoecaria agallocha Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO30975 Fuchsia Genus Onagraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO1103 Dioscorea japonica Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14089 Hypericum ascyron Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO140 Coriaria japonica Species Coriariaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13907 Senecio renardii Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO30488 Euphorbia sp Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5065 Cladonia fallax Species Cladoniaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO20003 Phyllanthus niruri Species Phyllanthaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8528 Citrus junos Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO30821 Geranium sp Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5731 Euphorbia humifusa Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO30634 Acer nikoense Species Sapindaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25774 Virola multinervia Species Myristicaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26880 Mallotus japonicus Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO3735 Erythroxylum coca Species Erythroxylaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO20003 Phyllanthus niruri Species Phyllanthaceae Eukaryota n.a. n.a. n.a. Database[MetaboLights]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota Fruits n.a. Database[Phenol-Explorer]
NPO13907 Senecio renardii Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9734 Vincetoxicum hirundinaria Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22608 Excoecaria agallocha Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5731 Euphorbia humifusa Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18645 Geranium sp. Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1103 Dioscorea japonica Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1209 Swartzia madagascariensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5065 Cladonia fallax Species Cladoniaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3735 Erythroxylum coca Species Erythroxylaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8543 Meconopsis horridula Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20003 Phyllanthus niruri Species Phyllanthaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26880 Mallotus japonicus Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13023 Euphorbia sp. Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13983 Acer maximowiczianum Species Sapindaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO140 Coriaria japonica Species Coriariaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14089 Hypericum ascyron Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18313 Erodium stephanianum Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO10813 Fuchsia sp. Species Onagraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18030 Herba acalyphae n.a. n.a. n.a. n.a. n.a. n.a. Database[TCMID]
NPO25774 Virola multinervia Species Myristicaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15687 Geranium wilfordii Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28450 Phyllanthus emblica Species Phyllanthaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8528 Citrus junos Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12441 Cymbopogon distans Species Poaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3199 Balanophora involucrata Species Balanophoraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21387 Forsythia suspensa Species Oleaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9207 Styrax ferrugineus Species Styracaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23577 Wolfiporia cocos Species Coriolaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25715 Senna siamea Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO12441 Cymbopogon distans Species Poaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO140 Coriaria japonica Species Coriariaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO18313 Erodium stephanianum Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28450 Phyllanthus emblica Species Phyllanthaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO14089 Hypericum ascyron Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO16698 Geranium carolinianum Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO22608 Excoecaria agallocha Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO1103 Dioscorea japonica Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO2798 Geranium thunbergii Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO15687 Geranium wilfordii Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO23577 Wolfiporia cocos Species Coriolaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28450 Phyllanthus emblica Species Phyllanthaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO18313 Erodium stephanianum Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO5731 Euphorbia humifusa Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO16698 Geranium carolinianum Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO21387 Forsythia suspensa Species Oleaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO12910 Ixeris stolonifera Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8528 Citrus junos Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19172 Vandopsis gigantea Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10389 Larix cajanderi Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8621 Cylindrospermopsis raciborskii Species Aphanizomenonaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO3924 Penicillium alutaceum Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO140 Coriaria japonica Species Coriariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8437 Encyothalia cliftonii Species Sporochnaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10729 Lechevalieria aerocolonigenes Species Pseudonocardiaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO10865 Sextonia rubra Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8543 Meconopsis horridula Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7013 Dicoma capensis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22608 Excoecaria agallocha Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1209 Swartzia madagascariensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO896 Streptomyces kanamyceticus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO550 Callicarpa maingayi Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23577 Wolfiporia cocos Species Coriolaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14289 Pieris napi Species Pieridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28450 Phyllanthus emblica Species Phyllanthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5301 Haplophyllum ferganicum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9081 Lecidea aglaeotera Species Lecideaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11882 Cedrus libani Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21498 Coccus ilicis Species Coccidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15448 Chrysothamnus parryi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13504 Lotus japonicus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12330 Pseudophryne coriacea Species Myobatrachidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19369 Bacillus thuringiensis Species Bacillaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO9734 Vincetoxicum hirundinaria Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3458 Lupinus verbasciformis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9669 Dictyopteris acrostichoides Species Dictyotaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16698 Geranium carolinianum Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10012 Triaenophora rupestris Species Orobanchaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6707 Cosmopterix victor Species Cosmopterigidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6179 Aframomum amaniense Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14615 Streptomyces paulus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO14200 Aristolochia zollingeriana Species Aristolochiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8909 Pteris radiata Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25715 Senna siamea Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8773 Sonchus ortunoi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO762 Digitalis isabelliana Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12234 Khaya ivorensis Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2130 Ehretia dicksonii Species Ehretiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9973 Euphorbia turczaninowii Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7169 Nama hispidum Species Namaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2798 Geranium thunbergii Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7381 Ircinia spinosula Species Irciniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13701 Melaleuca rhaphiophylla Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12585 Craspidospermum verticillatum Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26170 Haliclona mucosa Species Chalinidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7752 Beilschmiedia anacardioides Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2174 Polysiphonia elongata Species Rhodomelaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4073 Geranium sylvaticum Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20003 Phyllanthus niruri Species Phyllanthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5065 Cladonia fallax Species Cladoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3199 Balanophora involucrata Species Balanophoraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12414 Penicillium paxilli Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6774 Khaya senegalensis Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14504 Alectoria divergens Species Parmeliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13983 Acer maximowiczianum Species Sapindaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15132 Cypholophus friesianus Species Urticaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12061 Justicia paniculata Species Acanthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25774 Virola multinervia Species Myristicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5541 Crotalaria aegyptiaca Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6039 Aglaia laxiflora Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3119 Cephalaria uralensis Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8223 Gnaphalium polycaulon Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13076 Cephalaria grossheimii Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3280 Penicillium crustaceum Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3453 Elaeocarpus fuscoides Species Elaeocarpaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5731 Euphorbia humifusa Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO477 Lepraria xanthina Species Stereocaulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12069 Isaria felina Species Cordycipitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5344 Calodendrum capense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14089 Hypericum ascyron Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3735 Erythroxylum coca Species Erythroxylaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4795 Prunus armeniaca Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7625 Scopolia hladnikiana Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18313 Erodium stephanianum Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO305 Vitex pinnata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6330 Croton caudatus Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1103 Dioscorea japonica Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2723 Artemisia carvifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5508 Stevia purpurea Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7087 Oxera splendida Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1661 Bartramia pomiformis Species Bartramiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18178 Chelonaplysilla erecta Species Darwinellidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26880 Mallotus japonicus Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12754 Cerinthe minor Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21387 Forsythia suspensa Species Oleaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15164 Jacobaea adonidifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13907 Senecio renardii Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9207 Styrax ferrugineus Species Styracaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT1166 Individual Protein Angiotensin-converting enzyme Homo sapiens IC50 = 400000.0 nM PMID[486857]
NPT326 Individual Protein Squalene monooxygenase Rattus norvegicus IC50 = 4100.0 nM PMID[486858]
NPT672 Cell Line TE-671 Homo sapiens ED50 > 10.0 ug ml-1 PMID[486859]
NPT180 Cell Line HCT-8 Homo sapiens ED50 > 10.0 ug ml-1 PMID[486859]
NPT81 Cell Line A549 Homo sapiens ED50 > 10.0 ug ml-1 PMID[486859]
NPT91 Cell Line KB Homo sapiens ED50 > 10.0 ug ml-1 PMID[486859]
NPT2454 Cell Line RD Homo sapiens CC50 = 200.0 ug.mL-1 PMID[486863]
NPT81 Cell Line A549 Homo sapiens Survival > 90.0 % PMID[486866]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. ED50 = 0.35 ug ml-1 PMID[486859]
NPT2 Others Unspecified Activity = 93.0 % PMID[486860]
NPT2 Others Unspecified Activity = 103.0 % PMID[486860]
NPT2 Others Unspecified Activity = 6.0 % PMID[486860]
NPT2 Others Unspecified Activity = 12.0 % PMID[486860]
NPT2 Others Unspecified Activity = 39.0 % PMID[486860]
NPT2 Others Unspecified Activity = 89.0 % PMID[486860]
NPT2 Others Unspecified Activity = 62.0 % PMID[486860]
NPT2 Others Unspecified Activity = 15.0 % PMID[486860]
NPT2 Others Unspecified Activity = 2265.0 % PMID[486860]
NPT2 Others Unspecified Activity = 10733.0 % PMID[486860]
NPT2 Others Unspecified Activity = 11148.0 % PMID[486860]
NPT2 Others Unspecified Activity = 11805.0 % PMID[486860]
NPT614 Tissue Plasma Rattus norvegicus Cp = 0.45 uM PMID[486861]
NPT2 Others Unspecified Ratio CC50/EC50 = 1.9 n.a. PMID[486862]
NPT27 Others Unspecified CC50 = 63400.0 nM PMID[486862]
NPT191 Organism Hepatitis C virus Hepatitis C virus EC50 = 33190.0 nM PMID[486862]
NPT2 Others Unspecified IC50 = 8910.0 nM PMID[486862]
NPT3041 Organism Human enterovirus 71 Human enterovirus 71 IC50 = 10.0 ug.mL-1 PMID[486863]
NPT2 Others Unspecified Ratio CC50/IC50 = 20.0 n.a. PMID[486863]
NPT3041 Organism Human enterovirus 71 Human enterovirus 71 Activity = 35.0 % PMID[486863]
NPT3041 Organism Human enterovirus 71 Human enterovirus 71 Activity = 40.0 % PMID[486863]
NPT4701 Tissue Bone Rattus norvegicus Inhibition = 3.05 % PMID[486864]
NPT4701 Tissue Bone Rattus norvegicus Inhibition = 9.31 % PMID[486864]
NPT4701 Tissue Bone Rattus norvegicus Inhibition = 24.25 % PMID[486864]
NPT4701 Tissue Bone Rattus norvegicus Inhibition = 46.0 % PMID[486864]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC201814 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9718 High Similarity NPC3474
0.9489 High Similarity NPC119094
0.9489 High Similarity NPC173872
0.9429 High Similarity NPC231254
0.9379 High Similarity NPC290289
0.9379 High Similarity NPC240200
0.9379 High Similarity NPC158214
0.9379 High Similarity NPC7839
0.9379 High Similarity NPC223534
0.9379 High Similarity NPC142291
0.9375 High Similarity NPC261623
0.9375 High Similarity NPC111490
0.9368 High Similarity NPC80956
0.9326 High Similarity NPC160543
0.9326 High Similarity NPC187632
0.9326 High Similarity NPC472724
0.9326 High Similarity NPC93065
0.9326 High Similarity NPC472720
0.9326 High Similarity NPC469652
0.9326 High Similarity NPC472721
0.9326 High Similarity NPC31208
0.9322 High Similarity NPC65489
0.9322 High Similarity NPC260521
0.9322 High Similarity NPC469649
0.9314 High Similarity NPC170203
0.9282 High Similarity NPC189312
0.9274 High Similarity NPC471091
0.9274 High Similarity NPC264302
0.9274 High Similarity NPC40078
0.9274 High Similarity NPC97924
0.927 High Similarity NPC477083
0.927 High Similarity NPC477081
0.9266 High Similarity NPC469650
0.9261 High Similarity NPC135831
0.9261 High Similarity NPC97119
0.9261 High Similarity NPC297503
0.9253 High Similarity NPC472723
0.9253 High Similarity NPC297574
0.9205 High Similarity NPC8940
0.9157 High Similarity NPC474093
0.9157 High Similarity NPC104910
0.9153 High Similarity NPC129533
0.9153 High Similarity NPC470718
0.9153 High Similarity NPC123259
0.9106 High Similarity NPC30011
0.9106 High Similarity NPC97817
0.9106 High Similarity NPC475179
0.9106 High Similarity NPC72554
0.9101 High Similarity NPC21359
0.9101 High Similarity NPC470717
0.9101 High Similarity NPC470713
0.9101 High Similarity NPC25946
0.9101 High Similarity NPC470720
0.9101 High Similarity NPC460984
0.9091 High Similarity NPC293626
0.9091 High Similarity NPC267680
0.9091 High Similarity NPC113836
0.9091 High Similarity NPC196127
0.9091 High Similarity NPC37668
0.9091 High Similarity NPC253521
0.9091 High Similarity NPC217387
0.9091 High Similarity NPC258044
0.9066 High Similarity NPC477082
0.9056 High Similarity NPC269046
0.905 High Similarity NPC295625
0.905 High Similarity NPC473554
0.905 High Similarity NPC470719
0.905 High Similarity NPC112380
0.9045 High Similarity NPC241781
0.9045 High Similarity NPC162394
0.9045 High Similarity NPC156785
0.9045 High Similarity NPC132111
0.9034 High Similarity NPC144097
0.9034 High Similarity NPC61904
0.9029 High Similarity NPC473550
0.9027 High Similarity NPC470450
0.9017 High Similarity NPC43918
0.9017 High Similarity NPC311389
0.9017 High Similarity NPC261411
0.9017 High Similarity NPC470271
0.9017 High Similarity NPC190204
0.9 High Similarity NPC179947
0.9 High Similarity NPC237202
0.9 High Similarity NPC269625
0.8994 High Similarity NPC49690
0.8994 High Similarity NPC249560
0.8994 High Similarity NPC275977
0.8994 High Similarity NPC223860
0.8994 High Similarity NPC470416
0.8983 High Similarity NPC476622
0.8983 High Similarity NPC217520
0.8983 High Similarity NPC139571
0.8983 High Similarity NPC477895
0.8983 High Similarity NPC476621
0.8983 High Similarity NPC476623
0.8983 High Similarity NPC476620
0.8983 High Similarity NPC476618
0.8983 High Similarity NPC35167
0.8983 High Similarity NPC476619
0.8977 High Similarity NPC253685
0.8977 High Similarity NPC81042
0.8977 High Similarity NPC214621
0.8977 High Similarity NPC223426
0.8977 High Similarity NPC34267
0.8973 High Similarity NPC174140
0.8971 High Similarity NPC47140
0.8971 High Similarity NPC67134
0.8962 High Similarity NPC476358
0.896 High Similarity NPC175793
0.895 High Similarity NPC205721
0.895 High Similarity NPC473618
0.8944 High Similarity NPC33083
0.8939 High Similarity NPC36138
0.8933 High Similarity NPC472725
0.8933 High Similarity NPC472726
0.8933 High Similarity NPC471030
0.8933 High Similarity NPC198902
0.8927 High Similarity NPC473862
0.8927 High Similarity NPC268533
0.892 High Similarity NPC175230
0.892 High Similarity NPC166674
0.892 High Similarity NPC88560
0.892 High Similarity NPC46640
0.892 High Similarity NPC172033
0.892 High Similarity NPC34436
0.892 High Similarity NPC263119
0.892 High Similarity NPC219600
0.8914 High Similarity NPC47521
0.8914 High Similarity NPC470272
0.8914 High Similarity NPC149011
0.8914 High Similarity NPC204937
0.8914 High Similarity NPC181778
0.8908 High Similarity NPC473818
0.8895 High Similarity NPC105591
0.8895 High Similarity NPC64755
0.8895 High Similarity NPC475360
0.8889 High Similarity NPC318119
0.8889 High Similarity NPC470455
0.8889 High Similarity NPC470451
0.8883 High Similarity NPC208797
0.8883 High Similarity NPC53680
0.8883 High Similarity NPC469371
0.8876 High Similarity NPC173837
0.8876 High Similarity NPC472387
0.8876 High Similarity NPC267549
0.8864 High Similarity NPC26230
0.8864 High Similarity NPC100251
0.8864 High Similarity NPC476370
0.8864 High Similarity NPC65333
0.8864 High Similarity NPC60735
0.8857 High Similarity NPC216403
0.8857 High Similarity NPC138927
0.8857 High Similarity NPC41494
0.8857 High Similarity NPC149300
0.8857 High Similarity NPC186100
0.8846 High Similarity NPC41845
0.884 High Similarity NPC221140
0.884 High Similarity NPC229817
0.884 High Similarity NPC475352
0.884 High Similarity NPC475220
0.884 High Similarity NPC473686
0.8833 High Similarity NPC321916
0.8833 High Similarity NPC470447
0.8833 High Similarity NPC470446
0.8833 High Similarity NPC470445
0.8833 High Similarity NPC470449
0.882 High Similarity NPC471669
0.882 High Similarity NPC472991
0.882 High Similarity NPC472380
0.882 High Similarity NPC472992
0.882 High Similarity NPC67629
0.882 High Similarity NPC79736
0.882 High Similarity NPC296018
0.882 High Similarity NPC472384
0.882 High Similarity NPC89127
0.882 High Similarity NPC472382
0.882 High Similarity NPC219043
0.882 High Similarity NPC8573
0.882 High Similarity NPC154741
0.8814 High Similarity NPC4390
0.8814 High Similarity NPC472993
0.8814 High Similarity NPC98583
0.8814 High Similarity NPC476374
0.8807 High Similarity NPC476365
0.8807 High Similarity NPC156869
0.8807 High Similarity NPC254855
0.8807 High Similarity NPC136042
0.8807 High Similarity NPC29958
0.8807 High Similarity NPC155763
0.8807 High Similarity NPC285197
0.8807 High Similarity NPC255157
0.8807 High Similarity NPC67326
0.8807 High Similarity NPC259896
0.8807 High Similarity NPC235260
0.8807 High Similarity NPC20505
0.88 High Similarity NPC160156
0.88 High Similarity NPC275454
0.88 High Similarity NPC92565
0.88 High Similarity NPC31034
0.88 High Similarity NPC45400

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC201814 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8971 High Similarity NPD7993 Clinical (unspecified phase)
0.8764 High Similarity NPD4338 Clinical (unspecified phase)
0.8764 High Similarity NPD7808 Phase 3
0.8757 High Similarity NPD6797 Phase 2
0.8708 High Similarity NPD7251 Discontinued
0.8605 High Similarity NPD4868 Clinical (unspecified phase)
0.8596 High Similarity NPD7472 Approved
0.8596 High Similarity NPD7074 Phase 3
0.858 High Similarity NPD6166 Phase 2
0.858 High Similarity NPD6168 Clinical (unspecified phase)
0.858 High Similarity NPD6167 Clinical (unspecified phase)
0.8539 High Similarity NPD7054 Approved
0.8508 High Similarity NPD8313 Approved
0.8508 High Similarity NPD8312 Approved
0.8483 Intermediate Similarity NPD3818 Discontinued
0.8382 Intermediate Similarity NPD1465 Phase 2
0.8378 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.8333 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.8289 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.8239 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.8202 Intermediate Similarity NPD6959 Discontinued
0.8177 Intermediate Similarity NPD7228 Approved
0.8177 Intermediate Similarity NPD3751 Discontinued
0.8132 Intermediate Similarity NPD5844 Phase 1
0.8125 Intermediate Similarity NPD3817 Phase 2
0.8122 Intermediate Similarity NPD7473 Discontinued
0.8122 Intermediate Similarity NPD8151 Discontinued
0.8114 Intermediate Similarity NPD1934 Approved
0.8111 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.8079 Intermediate Similarity NPD3882 Suspended
0.8056 Intermediate Similarity NPD6232 Discontinued
0.8056 Intermediate Similarity NPD3787 Discontinued
0.8034 Intermediate Similarity NPD7075 Discontinued
0.8021 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7989 Intermediate Similarity NPD6234 Discontinued
0.7967 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7966 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.7966 Intermediate Similarity NPD8455 Phase 2
0.7903 Intermediate Similarity NPD6559 Discontinued
0.7901 Intermediate Similarity NPD7199 Phase 2
0.7865 Intermediate Similarity NPD7819 Suspended
0.7865 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.7865 Intermediate Similarity NPD2801 Approved
0.7845 Intermediate Similarity NPD5494 Approved
0.7833 Intermediate Similarity NPD3749 Approved
0.7821 Intermediate Similarity NPD5402 Approved
0.7809 Intermediate Similarity NPD37 Approved
0.7807 Intermediate Similarity NPD7240 Approved
0.7778 Intermediate Similarity NPD7435 Discontinued
0.7778 Intermediate Similarity NPD4966 Approved
0.7778 Intermediate Similarity NPD4967 Phase 2
0.7778 Intermediate Similarity NPD4965 Approved
0.7771 Intermediate Similarity NPD1512 Approved
0.7727 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7722 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.7713 Intermediate Similarity NPD7685 Pre-registration
0.7709 Intermediate Similarity NPD6801 Discontinued
0.7697 Intermediate Similarity NPD4380 Phase 2
0.768 Intermediate Similarity NPD7768 Phase 2
0.7657 Intermediate Similarity NPD6799 Approved
0.7657 Intermediate Similarity NPD1511 Approved
0.7654 Intermediate Similarity NPD7411 Suspended
0.765 Intermediate Similarity NPD8320 Phase 1
0.765 Intermediate Similarity NPD8319 Approved
0.7635 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.7635 Intermediate Similarity NPD7874 Approved
0.7627 Intermediate Similarity NPD5403 Approved
0.7626 Intermediate Similarity NPD6780 Approved
0.7626 Intermediate Similarity NPD6779 Approved
0.7626 Intermediate Similarity NPD6776 Approved
0.7626 Intermediate Similarity NPD6782 Approved
0.7626 Intermediate Similarity NPD6781 Approved
0.7626 Intermediate Similarity NPD6777 Approved
0.7626 Intermediate Similarity NPD6778 Approved
0.76 Intermediate Similarity NPD7698 Approved
0.76 Intermediate Similarity NPD7697 Approved
0.76 Intermediate Similarity NPD7696 Phase 3
0.7598 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.7598 Intermediate Similarity NPD6599 Discontinued
0.7598 Intermediate Similarity NPD7783 Phase 2
0.7586 Intermediate Similarity NPD3750 Approved
0.7584 Intermediate Similarity NPD1653 Approved
0.7562 Intermediate Similarity NPD7871 Phase 2
0.7562 Intermediate Similarity NPD7870 Phase 2
0.7537 Intermediate Similarity NPD7701 Phase 2
0.7514 Intermediate Similarity NPD5401 Approved
0.7513 Intermediate Similarity NPD8150 Discontinued
0.7471 Intermediate Similarity NPD1549 Phase 2
0.7453 Intermediate Similarity NPD5619 Clinical (unspecified phase)
0.7443 Intermediate Similarity NPD6190 Approved
0.7437 Intermediate Similarity NPD7700 Phase 2
0.7437 Intermediate Similarity NPD7699 Phase 2
0.7433 Intermediate Similarity NPD3926 Phase 2
0.7427 Intermediate Similarity NPD7801 Approved
0.7426 Intermediate Similarity NPD7680 Approved
0.7423 Intermediate Similarity NPD8434 Phase 2
0.7416 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.7414 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.7414 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.7405 Intermediate Similarity NPD919 Approved
0.74 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7374 Intermediate Similarity NPD6534 Approved
0.7374 Intermediate Similarity NPD6535 Approved
0.7371 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.736 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7358 Intermediate Similarity NPD8155 Clinical (unspecified phase)
0.7318 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.7299 Intermediate Similarity NPD3748 Approved
0.7263 Intermediate Similarity NPD7390 Discontinued
0.7253 Intermediate Similarity NPD7458 Discontinued
0.7253 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7234 Intermediate Similarity NPD1247 Approved
0.7225 Intermediate Similarity NPD230 Phase 1
0.7222 Intermediate Similarity NPD2533 Approved
0.7222 Intermediate Similarity NPD2534 Approved
0.7222 Intermediate Similarity NPD2532 Approved
0.7222 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7222 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.7216 Intermediate Similarity NPD7266 Discontinued
0.7214 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7206 Intermediate Similarity NPD6823 Phase 2
0.72 Intermediate Similarity NPD1510 Phase 2
0.7159 Intermediate Similarity NPD2796 Approved
0.7158 Intermediate Similarity NPD3226 Approved
0.7135 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7102 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.7095 Intermediate Similarity NPD4628 Phase 3
0.7069 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7069 Intermediate Similarity NPD943 Approved
0.7069 Intermediate Similarity NPD1613 Approved
0.7056 Intermediate Similarity NPD7090 Clinical (unspecified phase)
0.7053 Intermediate Similarity NPD8127 Discontinued
0.7039 Intermediate Similarity NPD6674 Discontinued
0.7029 Intermediate Similarity NPD1933 Approved
0.7024 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7016 Intermediate Similarity NPD7229 Phase 3
0.7 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD8166 Discontinued
0.7 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD4287 Approved
0.698 Remote Similarity NPD6213 Phase 3
0.698 Remote Similarity NPD6214 Clinical (unspecified phase)
0.698 Remote Similarity NPD6212 Phase 3
0.6977 Remote Similarity NPD1530 Clinical (unspecified phase)
0.6971 Remote Similarity NPD1240 Approved
0.6966 Remote Similarity NPD1551 Phase 2
0.6966 Remote Similarity NPD5408 Approved
0.6966 Remote Similarity NPD5404 Approved
0.6966 Remote Similarity NPD5406 Approved
0.6966 Remote Similarity NPD5405 Approved
0.6959 Remote Similarity NPD7907 Approved
0.6954 Remote Similarity NPD6798 Discontinued
0.6938 Remote Similarity NPD7211 Clinical (unspecified phase)
0.6936 Remote Similarity NPD1529 Clinical (unspecified phase)
0.6932 Remote Similarity NPD447 Suspended
0.6927 Remote Similarity NPD2346 Discontinued
0.6906 Remote Similarity NPD7003 Approved
0.6905 Remote Similarity NPD7584 Approved
0.6893 Remote Similarity NPD1607 Approved
0.6878 Remote Similarity NPD5353 Approved
0.6875 Remote Similarity NPD4060 Phase 1
0.6872 Remote Similarity NPD6100 Approved
0.6872 Remote Similarity NPD2935 Discontinued
0.6872 Remote Similarity NPD6099 Approved
0.6872 Remote Similarity NPD7177 Discontinued
0.6869 Remote Similarity NPD7549 Discontinued
0.6866 Remote Similarity NPD4111 Phase 1
0.6866 Remote Similarity NPD4665 Approved
0.6865 Remote Similarity NPD920 Approved
0.6857 Remote Similarity NPD6859 Clinical (unspecified phase)
0.6853 Remote Similarity NPD5953 Discontinued
0.6851 Remote Similarity NPD2800 Approved
0.6848 Remote Similarity NPD642 Clinical (unspecified phase)
0.6839 Remote Similarity NPD5710 Approved
0.6839 Remote Similarity NPD5711 Approved
0.6839 Remote Similarity NPD4908 Phase 1
0.6837 Remote Similarity NPD7930 Approved
0.6836 Remote Similarity NPD6355 Discontinued
0.6818 Remote Similarity NPD6233 Phase 2
0.6816 Remote Similarity NPD1509 Clinical (unspecified phase)
0.6816 Remote Similarity NPD2799 Discontinued
0.6811 Remote Similarity NPD6273 Approved
0.6804 Remote Similarity NPD5242 Approved
0.68 Remote Similarity NPD3027 Phase 3
0.6794 Remote Similarity NPD5006 Approved
0.6794 Remote Similarity NPD5005 Approved
0.6792 Remote Similarity NPD7585 Approved
0.6789 Remote Similarity NPD4288 Approved
0.6786 Remote Similarity NPD7799 Discontinued
0.6771 Remote Similarity NPD5537 Clinical (unspecified phase)
0.6769 Remote Similarity NPD7784 Clinical (unspecified phase)
0.6762 Remote Similarity NPD4002 Approved
0.6762 Remote Similarity NPD4004 Approved
0.6761 Remote Similarity NPD3764 Approved
0.6761 Remote Similarity NPD4907 Clinical (unspecified phase)
0.676 Remote Similarity NPD7097 Phase 1
0.6758 Remote Similarity NPD1243 Approved
0.6751 Remote Similarity NPD7286 Phase 2
0.6748 Remote Similarity NPD7667 Clinical (unspecified phase)
0.6746 Remote Similarity NPD2494 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data