Structure

Physi-Chem Properties

Molecular Weight:  822.31
Volume:  795.475
LogP:  3.614
LogD:  1.805
LogS:  -2.97
# Rotatable Bonds:  7
TPSA:  237.2
# H-Bond Aceptor:  16
# H-Bond Donor:  6
# Rings:  8
# Heavy Atoms:  16

MedChem Properties

QED Drug-Likeness Score:  0.218
Synthetic Accessibility Score:  6.601
Fsp3:  0.558
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.083
MDCK Permeability:  3.1374740501632914e-05
Pgp-inhibitor:  0.965
Pgp-substrate:  0.999
Human Intestinal Absorption (HIA):  0.033
20% Bioavailability (F20%):  0.143
30% Bioavailability (F30%):  0.976

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.271
Plasma Protein Binding (PPB):  96.67424774169922%
Volume Distribution (VD):  0.591
Pgp-substrate:  4.476622104644775%

ADMET: Metabolism

CYP1A2-inhibitor:  0.007
CYP1A2-substrate:  0.925
CYP2C19-inhibitor:  0.022
CYP2C19-substrate:  0.259
CYP2C9-inhibitor:  0.091
CYP2C9-substrate:  0.081
CYP2D6-inhibitor:  0.001
CYP2D6-substrate:  0.05
CYP3A4-inhibitor:  0.608
CYP3A4-substrate:  0.901

ADMET: Excretion

Clearance (CL):  8.851
Half-life (T1/2):  0.408

ADMET: Toxicity

hERG Blockers:  0.075
Human Hepatotoxicity (H-HT):  0.889
Drug-inuced Liver Injury (DILI):  0.981
AMES Toxicity:  0.954
Rat Oral Acute Toxicity:  0.947
Maximum Recommended Daily Dose:  0.982
Skin Sensitization:  0.694
Carcinogencity:  0.943
Eye Corrosion:  0.003
Eye Irritation:  0.008
Respiratory Toxicity:  0.393

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Similar NPs/Drugs  

  Natural Product: NPC470582

Natural Product ID:  NPC470582
Common Name*:   Saquayamycins F
IUPAC Name:   (3R,4aR,12bS)-4a,8,12b-trihydroxy-9-[(2R,4R,5S,6R)-4-hydroxy-6-methyl-5-[(2R,6S)-6-methyl-5-oxooxan-2-yl]oxyoxan-2-yl]-3-methyl-3-[(2S,5S,6S)-6-methyl-5-[[(2R,6S)-6-methyl-5-oxo-2H-pyran-2-yl]oxy]oxan-2-yl]oxy-2,4-dihydrobenzo[a]anthracene-1,7,12-trione
Synonyms:   Saquayamycins F
Standard InCHIKey:  IPDYHZBTJPZFHQ-USAPNZCCSA-N
Standard InCHI:  InChI=1S/C43H50O16/c1-19-26(44)8-11-32(54-19)57-29-10-13-34(56-21(29)3)59-41(5)17-31(47)43(52)36-25(14-15-42(43,51)18-41)38(49)35-24(39(36)50)7-6-23(37(35)48)30-16-28(46)40(22(4)53-30)58-33-12-9-27(45)20(2)55-33/h6-8,11,14-15,19-22,28-30,32-34,40,46,48,51-52H,9-10,12-13,16-18H2,1-5H3/t19-,20-,21-,22+,28+,29-,30+,32-,33-,34-,40+,41-,42-,43-/m0/s1
SMILES:  CC1C(CCC(O1)OC2(CC(=O)C3(C4=C(C=CC3(C2)O)C(=O)C5=C(C4=O)C=CC(=C5O)C6CC(C(C(O6)C)OC7CCC(=O)C(O7)C)O)O)C)OC8C=CC(=O)C(O8)C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL2071403
PubChem CID:   70682597
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0003415] Angucyclines

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10344559]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10344578]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10348041]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10604756]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10695669]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10724004]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10994816]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[11099231]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[11132958]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[11374972]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[11473415]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[14738393]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. Australian n.a. PMID[15497950]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[15813185]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[15844966]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[15974616]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16180833]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[1666120]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16724845]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16830891]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16872146]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17125235]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17315965]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17551212]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17608531]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17844998]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17887721]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17917237]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18044841]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. Indonesian n.a. PMID[18081255]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18081255]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18205372]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. Northwest Territories, Canada 1995 PMID[18327911]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18327911]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18666798]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18776684]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19007176]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19129624]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19191549]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19856955]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19883065]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[20092333]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[20545334]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[20836523]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21028889]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21028891]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[21090727]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21314175]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[21639131]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21728289]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. latex n.a. PMID[21751787]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21807523]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21873059]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. latex n.a. PMID[21879726]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[22145663]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22574670]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22583058]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22591466]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22758660]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22775474]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[23387796]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[23662937]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[24592993]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[24754815]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[24878306]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[24964393]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25211234]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25455147]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25495422]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25537064]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25918793]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25934225]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[26035239]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[26465675]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[26798949]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[26905826]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[31013087]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[31298537]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[31894983]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[32298122]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[8501018]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[8784423]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[8931733]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[8982334]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9031666]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9031676]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9066767]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9066768]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9186568]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9531983]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[9711246]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT2 Others Unspecified IC50 = 2000.0 nM PMID[536908]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC470582 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC470581
1.0 High Similarity NPC115447
0.9879 High Similarity NPC266513
0.9879 High Similarity NPC83331
0.9878 High Similarity NPC470583
0.9878 High Similarity NPC19056
0.9819 High Similarity NPC283980
0.9819 High Similarity NPC187441
0.9756 High Similarity NPC270027
0.9695 High Similarity NPC470580
0.9333 High Similarity NPC470735
0.9333 High Similarity NPC329647
0.9286 High Similarity NPC183441
0.924 High Similarity NPC72783
0.9235 High Similarity NPC176246
0.9217 High Similarity NPC478026
0.9176 High Similarity NPC70862
0.9157 High Similarity NPC108487
0.9157 High Similarity NPC133775
0.9118 High Similarity NPC65118
0.9059 High Similarity NPC294501
0.9056 High Similarity NPC131405
0.9053 High Similarity NPC175477
0.9 High Similarity NPC478021
0.8988 High Similarity NPC478020
0.8988 High Similarity NPC478022
0.8876 High Similarity NPC314672
0.8827 High Similarity NPC48474
0.8795 High Similarity NPC478027
0.8736 High Similarity NPC223735
0.8736 High Similarity NPC307754
0.8728 High Similarity NPC315619
0.8701 High Similarity NPC313452
0.869 High Similarity NPC53139
0.8686 High Similarity NPC198893
0.8686 High Similarity NPC232818
0.8686 High Similarity NPC314489
0.8663 High Similarity NPC63470
0.8644 High Similarity NPC315221
0.8613 High Similarity NPC246274
0.8611 High Similarity NPC478035
0.8603 High Similarity NPC87583
0.8588 High Similarity NPC58538
0.858 High Similarity NPC289876
0.858 High Similarity NPC475246
0.858 High Similarity NPC46958
0.8571 High Similarity NPC470199
0.8571 High Similarity NPC314459
0.8547 High Similarity NPC224557
0.8547 High Similarity NPC292706
0.8539 High Similarity NPC85316
0.8539 High Similarity NPC477860
0.8539 High Similarity NPC475161
0.8539 High Similarity NPC197357
0.8523 High Similarity NPC3718
0.8521 High Similarity NPC206641
0.8521 High Similarity NPC208651
0.8516 High Similarity NPC478034
0.8511 High Similarity NPC315889
0.8478 Intermediate Similarity NPC470196
0.8478 Intermediate Similarity NPC282474
0.8478 Intermediate Similarity NPC470198
0.8478 Intermediate Similarity NPC470197
0.8478 Intermediate Similarity NPC314687
0.8478 Intermediate Similarity NPC470193
0.8478 Intermediate Similarity NPC316274
0.8478 Intermediate Similarity NPC470194
0.8478 Intermediate Similarity NPC470200
0.8478 Intermediate Similarity NPC470195
0.8475 Intermediate Similarity NPC102053
0.8466 Intermediate Similarity NPC213052
0.8466 Intermediate Similarity NPC154986
0.8466 Intermediate Similarity NPC203751
0.8452 Intermediate Similarity NPC312482
0.8449 Intermediate Similarity NPC314941
0.8444 Intermediate Similarity NPC148710
0.8436 Intermediate Similarity NPC470453
0.8436 Intermediate Similarity NPC164047
0.8436 Intermediate Similarity NPC470452
0.8436 Intermediate Similarity NPC470448
0.8432 Intermediate Similarity NPC313274
0.843 Intermediate Similarity NPC187934
0.843 Intermediate Similarity NPC97637
0.8427 Intermediate Similarity NPC477683
0.8427 Intermediate Similarity NPC477682
0.8415 Intermediate Similarity NPC321046
0.8409 Intermediate Similarity NPC271385
0.8409 Intermediate Similarity NPC76128
0.8409 Intermediate Similarity NPC111536
0.8409 Intermediate Similarity NPC5029
0.8409 Intermediate Similarity NPC30432
0.8402 Intermediate Similarity NPC3449
0.84 Intermediate Similarity NPC5319
0.8383 Intermediate Similarity NPC475407
0.838 Intermediate Similarity NPC114257
0.838 Intermediate Similarity NPC245059
0.838 Intermediate Similarity NPC277710
0.838 Intermediate Similarity NPC299149
0.838 Intermediate Similarity NPC153578
0.838 Intermediate Similarity NPC84494
0.8373 Intermediate Similarity NPC112816
0.8372 Intermediate Similarity NPC317544
0.8371 Intermediate Similarity NPC48984
0.8371 Intermediate Similarity NPC122467
0.8371 Intermediate Similarity NPC14187
0.8371 Intermediate Similarity NPC202908
0.8371 Intermediate Similarity NPC292019
0.8371 Intermediate Similarity NPC475233
0.8364 Intermediate Similarity NPC136878
0.8362 Intermediate Similarity NPC470336
0.8362 Intermediate Similarity NPC85368
0.8362 Intermediate Similarity NPC199357
0.8362 Intermediate Similarity NPC470335
0.8353 Intermediate Similarity NPC148323
0.8353 Intermediate Similarity NPC283480
0.8352 Intermediate Similarity NPC294863
0.8352 Intermediate Similarity NPC282636
0.8343 Intermediate Similarity NPC477735
0.8333 Intermediate Similarity NPC208069
0.8333 Intermediate Similarity NPC102465
0.8324 Intermediate Similarity NPC101116
0.8324 Intermediate Similarity NPC89052
0.8324 Intermediate Similarity NPC278329
0.8324 Intermediate Similarity NPC251417
0.8324 Intermediate Similarity NPC212099
0.8324 Intermediate Similarity NPC146837
0.8324 Intermediate Similarity NPC314020
0.8323 Intermediate Similarity NPC44378
0.8323 Intermediate Similarity NPC280753
0.8315 Intermediate Similarity NPC294629
0.8315 Intermediate Similarity NPC186800
0.8315 Intermediate Similarity NPC63105
0.8315 Intermediate Similarity NPC470667
0.8315 Intermediate Similarity NPC68381
0.8306 Intermediate Similarity NPC205721
0.8305 Intermediate Similarity NPC13989
0.8305 Intermediate Similarity NPC473113
0.8304 Intermediate Similarity NPC29552
0.8304 Intermediate Similarity NPC472889
0.8304 Intermediate Similarity NPC257309
0.8303 Intermediate Similarity NPC474630
0.8297 Intermediate Similarity NPC241847
0.8295 Intermediate Similarity NPC222455
0.8295 Intermediate Similarity NPC328321
0.8295 Intermediate Similarity NPC473095
0.8295 Intermediate Similarity NPC473096
0.8295 Intermediate Similarity NPC259905
0.8294 Intermediate Similarity NPC82190
0.8294 Intermediate Similarity NPC192219
0.8294 Intermediate Similarity NPC477736
0.8294 Intermediate Similarity NPC174599
0.8286 Intermediate Similarity NPC476470
0.8286 Intermediate Similarity NPC142142
0.8286 Intermediate Similarity NPC186816
0.8286 Intermediate Similarity NPC256188
0.8286 Intermediate Similarity NPC189564
0.8286 Intermediate Similarity NPC12013
0.8286 Intermediate Similarity NPC32641
0.8286 Intermediate Similarity NPC11432
0.8286 Intermediate Similarity NPC203145
0.8286 Intermediate Similarity NPC477613
0.8286 Intermediate Similarity NPC221342
0.8278 Intermediate Similarity NPC473682
0.8278 Intermediate Similarity NPC192539
0.8278 Intermediate Similarity NPC110941
0.8278 Intermediate Similarity NPC212290
0.8278 Intermediate Similarity NPC241423
0.8278 Intermediate Similarity NPC473571
0.8278 Intermediate Similarity NPC126784
0.8278 Intermediate Similarity NPC470444
0.8278 Intermediate Similarity NPC470443
0.8268 Intermediate Similarity NPC219043
0.8268 Intermediate Similarity NPC65563
0.8268 Intermediate Similarity NPC255799
0.8268 Intermediate Similarity NPC470949
0.8268 Intermediate Similarity NPC469345
0.8266 Intermediate Similarity NPC471493
0.8258 Intermediate Similarity NPC472054
0.8258 Intermediate Similarity NPC469393
0.8258 Intermediate Similarity NPC98776
0.8258 Intermediate Similarity NPC470438
0.8258 Intermediate Similarity NPC25724
0.8251 Intermediate Similarity NPC105591
0.8251 Intermediate Similarity NPC64755
0.8251 Intermediate Similarity NPC174486
0.8242 Intermediate Similarity NPC470451
0.8242 Intermediate Similarity NPC275977
0.8242 Intermediate Similarity NPC223860
0.8242 Intermediate Similarity NPC470455
0.8242 Intermediate Similarity NPC249560
0.8242 Intermediate Similarity NPC106700
0.8242 Intermediate Similarity NPC29932
0.8239 Intermediate Similarity NPC473094
0.8235 Intermediate Similarity NPC314738
0.8235 Intermediate Similarity NPC205172
0.8235 Intermediate Similarity NPC209393
0.8235 Intermediate Similarity NPC109403
0.8235 Intermediate Similarity NPC261012
0.8235 Intermediate Similarity NPC471695
0.8229 Intermediate Similarity NPC292929

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC470582 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.887 High Similarity NPD7879 Clinical (unspecified phase)
0.8626 High Similarity NPD7700 Phase 2
0.8626 High Similarity NPD7699 Phase 2
0.8462 Intermediate Similarity NPD6535 Approved
0.8462 Intermediate Similarity NPD6534 Approved
0.8449 Intermediate Similarity NPD8319 Approved
0.8449 Intermediate Similarity NPD8320 Phase 1
0.8436 Intermediate Similarity NPD8150 Discontinued
0.84 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.8315 Intermediate Similarity NPD7808 Phase 3
0.8298 Intermediate Similarity NPD7696 Phase 3
0.8298 Intermediate Similarity NPD7435 Discontinued
0.8298 Intermediate Similarity NPD7698 Approved
0.8298 Intermediate Similarity NPD7697 Approved
0.8258 Intermediate Similarity NPD7251 Discontinued
0.8235 Intermediate Similarity NPD6779 Approved
0.8235 Intermediate Similarity NPD6780 Approved
0.8235 Intermediate Similarity NPD6777 Approved
0.8235 Intermediate Similarity NPD6781 Approved
0.8235 Intermediate Similarity NPD6776 Approved
0.8235 Intermediate Similarity NPD6778 Approved
0.8235 Intermediate Similarity NPD6782 Approved
0.822 Intermediate Similarity NPD7701 Phase 2
0.8202 Intermediate Similarity NPD6797 Phase 2
0.8167 Intermediate Similarity NPD8313 Approved
0.8167 Intermediate Similarity NPD8312 Approved
0.8158 Intermediate Similarity NPD7870 Phase 2
0.8158 Intermediate Similarity NPD7871 Phase 2
0.8135 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.8135 Intermediate Similarity NPD7874 Approved
0.8045 Intermediate Similarity NPD7074 Phase 3
0.8045 Intermediate Similarity NPD7472 Approved
0.8 Intermediate Similarity NPD7801 Approved
0.7989 Intermediate Similarity NPD7054 Approved
0.7946 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7933 Intermediate Similarity NPD3751 Discontinued
0.7914 Intermediate Similarity NPD6214 Clinical (unspecified phase)
0.7914 Intermediate Similarity NPD6213 Phase 3
0.7914 Intermediate Similarity NPD6212 Phase 3
0.7912 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7897 Intermediate Similarity NPD8151 Discontinued
0.7886 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.7835 Intermediate Similarity NPD7211 Clinical (unspecified phase)
0.7772 Intermediate Similarity NPD6823 Phase 2
0.7746 Intermediate Similarity NPD4380 Phase 2
0.7735 Intermediate Similarity NPD3818 Discontinued
0.7734 Intermediate Similarity NPD8155 Clinical (unspecified phase)
0.7684 Intermediate Similarity NPD7075 Discontinued
0.7663 Intermediate Similarity NPD6559 Discontinued
0.7638 Intermediate Similarity NPD7783 Phase 2
0.7638 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.7624 Intermediate Similarity NPD6166 Phase 2
0.7624 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7624 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7611 Intermediate Similarity NPD3787 Discontinued
0.7594 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7582 Intermediate Similarity NPD7473 Discontinued
0.7556 Intermediate Similarity NPD6959 Discontinued
0.7553 Intermediate Similarity NPD8434 Phase 2
0.7514 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.7514 Intermediate Similarity NPD7819 Suspended
0.7514 Intermediate Similarity NPD6232 Discontinued
0.7473 Intermediate Similarity NPD8368 Discontinued
0.7472 Intermediate Similarity NPD5402 Approved
0.7458 Intermediate Similarity NPD6801 Discontinued
0.7446 Intermediate Similarity NPD7799 Discontinued
0.7419 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7416 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.7405 Intermediate Similarity NPD5844 Phase 1
0.7354 Intermediate Similarity NPD8407 Phase 2
0.7351 Intermediate Similarity NPD7228 Approved
0.7308 Intermediate Similarity NPD5494 Approved
0.7299 Intermediate Similarity NPD8058 Clinical (unspecified phase)
0.7299 Intermediate Similarity NPD8059 Phase 3
0.7287 Intermediate Similarity NPD7685 Pre-registration
0.7283 Intermediate Similarity NPD6190 Approved
0.7278 Intermediate Similarity NPD3817 Phase 2
0.7278 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.7263 Intermediate Similarity NPD1934 Approved
0.7257 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.7257 Intermediate Similarity NPD2533 Approved
0.7257 Intermediate Similarity NPD2532 Approved
0.7257 Intermediate Similarity NPD2534 Approved
0.7238 Intermediate Similarity NPD3882 Suspended
0.7235 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.7222 Intermediate Similarity NPD2801 Approved
0.7222 Intermediate Similarity NPD8455 Phase 2
0.7219 Intermediate Similarity NPD8470 Clinical (unspecified phase)
0.72 Intermediate Similarity NPD7390 Discontinued
0.7191 Intermediate Similarity NPD3226 Approved
0.7175 Intermediate Similarity NPD5403 Approved
0.7159 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.7151 Intermediate Similarity NPD7266 Discontinued
0.7151 Intermediate Similarity NPD6599 Discontinued
0.7143 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD3300 Phase 2
0.7113 Intermediate Similarity NPD8361 Approved
0.7113 Intermediate Similarity NPD8360 Approved
0.7113 Intermediate Similarity NPD8435 Approved
0.7105 Intermediate Similarity NPD7240 Approved
0.7095 Intermediate Similarity NPD7458 Discontinued
0.7062 Intermediate Similarity NPD5401 Approved
0.7062 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.7059 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7052 Intermediate Similarity NPD2346 Discontinued
0.705 Intermediate Similarity NPD8486 Clinical (unspecified phase)
0.7029 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7022 Intermediate Similarity NPD1512 Approved
0.7017 Intermediate Similarity NPD7411 Suspended
0.701 Intermediate Similarity NPD7584 Approved
0.7006 Intermediate Similarity NPD6799 Approved
0.7 Intermediate Similarity NPD8285 Discontinued
0.7 Intermediate Similarity NPD7966 Clinical (unspecified phase)
0.6994 Remote Similarity NPD5404 Approved
0.6994 Remote Similarity NPD5406 Approved
0.6994 Remote Similarity NPD5408 Approved
0.6994 Remote Similarity NPD5405 Approved
0.6978 Remote Similarity NPD37 Approved
0.6973 Remote Similarity NPD6234 Discontinued
0.6957 Remote Similarity NPD4966 Approved
0.6957 Remote Similarity NPD4965 Approved
0.6957 Remote Similarity NPD4967 Phase 2
0.694 Remote Similarity NPD1465 Phase 2
0.6936 Remote Similarity NPD651 Clinical (unspecified phase)
0.6936 Remote Similarity NPD1510 Phase 2
0.6916 Remote Similarity NPD5619 Clinical (unspecified phase)
0.6914 Remote Similarity NPD970 Clinical (unspecified phase)
0.6914 Remote Similarity NPD1549 Phase 2
0.691 Remote Similarity NPD1511 Approved
0.69 Remote Similarity NPD8485 Approved
0.69 Remote Similarity NPD8090 Clinical (unspecified phase)
0.6897 Remote Similarity NPD2935 Discontinued
0.6891 Remote Similarity NPD36 Approved
0.6891 Remote Similarity NPD5034 Approved
0.6891 Remote Similarity NPD4955 Approved
0.6891 Remote Similarity NPD4954 Approved
0.6891 Remote Similarity NPD5026 Approved
0.6891 Remote Similarity NPD5028 Approved
0.6886 Remote Similarity NPD1470 Approved
0.6875 Remote Similarity NPD6674 Discontinued
0.6865 Remote Similarity NPD7768 Phase 2
0.6862 Remote Similarity NPD5711 Approved
0.6862 Remote Similarity NPD5710 Approved
0.6857 Remote Similarity NPD7930 Approved
0.6857 Remote Similarity NPD1550 Clinical (unspecified phase)
0.6857 Remote Similarity NPD1552 Clinical (unspecified phase)
0.6854 Remote Similarity NPD7236 Approved
0.6851 Remote Similarity NPD7239 Suspended
0.6839 Remote Similarity NPD5030 Phase 2
0.6837 Remote Similarity NPD5038 Approved
0.6837 Remote Similarity NPD5037 Approved
0.6837 Remote Similarity NPD8424 Clinical (unspecified phase)
0.6836 Remote Similarity NPD3750 Approved
0.6836 Remote Similarity NPD4628 Phase 3
0.6836 Remote Similarity NPD8166 Discontinued
0.6828 Remote Similarity NPD3749 Approved
0.6825 Remote Similarity NPD7184 Clinical (unspecified phase)
0.6822 Remote Similarity NPD7907 Approved
0.6822 Remote Similarity NPD8366 Approved
0.6821 Remote Similarity NPD1607 Approved
0.6813 Remote Similarity NPD5808 Clinical (unspecified phase)
0.6809 Remote Similarity NPD1247 Approved
0.6802 Remote Similarity NPD943 Approved
0.68 Remote Similarity NPD2796 Approved
0.6792 Remote Similarity NPD8404 Phase 2
0.6791 Remote Similarity NPD5537 Clinical (unspecified phase)
0.6786 Remote Similarity NPD5036 Approved
0.6769 Remote Similarity NPD5035 Approved
0.6763 Remote Similarity NPD230 Phase 1
0.6758 Remote Similarity NPD1653 Approved
0.6742 Remote Similarity NPD6398 Clinical (unspecified phase)
0.672 Remote Similarity NPD7199 Phase 2
0.6705 Remote Similarity NPD1240 Approved
0.6705 Remote Similarity NPD6100 Approved
0.6705 Remote Similarity NPD6099 Approved
0.6703 Remote Similarity NPD6980 Clinical (unspecified phase)
0.6702 Remote Similarity NPD919 Approved
0.6699 Remote Similarity NPD7680 Approved
0.6697 Remote Similarity NPD8491 Approved
0.6685 Remote Similarity NPD2800 Approved
0.6667 Remote Similarity NPD7237 Clinical (unspecified phase)
0.6651 Remote Similarity NPD7585 Approved
0.6649 Remote Similarity NPD3926 Phase 2
0.6647 Remote Similarity NPD1201 Approved
0.6635 Remote Similarity NPD7999 Approved
0.6634 Remote Similarity NPD7501 Clinical (unspecified phase)
0.6629 Remote Similarity NPD6651 Approved
0.6628 Remote Similarity NPD5952 Clinical (unspecified phase)
0.6603 Remote Similarity NPD7583 Approved
0.6593 Remote Similarity NPD7004 Clinical (unspecified phase)
0.6592 Remote Similarity NPD7421 Clinical (unspecified phase)
0.659 Remote Similarity NPD3764 Approved
0.659 Remote Similarity NPD2313 Discontinued
0.6582 Remote Similarity NPD5029 Approved
0.6582 Remote Similarity NPD5031 Approved
0.6582 Remote Similarity NPD5027 Approved
0.6574 Remote Similarity NPD4111 Phase 1
0.6574 Remote Similarity NPD4665 Approved
0.6554 Remote Similarity NPD3748 Approved
0.655 Remote Similarity NPD2798 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data