Structure

Physi-Chem Properties

Molecular Weight:  824.33
Volume:  792.191
LogP:  4.35
LogD:  2.281
LogS:  -3.372
# Rotatable Bonds:  5
TPSA:  229.36
# H-Bond Aceptor:  16
# H-Bond Donor:  6
# Rings:  9
# Heavy Atoms:  16

MedChem Properties

QED Drug-Likeness Score:  0.237
Synthetic Accessibility Score:  6.629
Fsp3:  0.628
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.562
MDCK Permeability:  3.1780382414581254e-05
Pgp-inhibitor:  0.671
Pgp-substrate:  0.999
Human Intestinal Absorption (HIA):  0.242
20% Bioavailability (F20%):  0.007
30% Bioavailability (F30%):  0.378

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.322
Plasma Protein Binding (PPB):  96.8229751586914%
Volume Distribution (VD):  0.225
Pgp-substrate:  5.857034206390381%

ADMET: Metabolism

CYP1A2-inhibitor:  0.005
CYP1A2-substrate:  0.986
CYP2C19-inhibitor:  0.042
CYP2C19-substrate:  0.483
CYP2C9-inhibitor:  0.247
CYP2C9-substrate:  0.05
CYP2D6-inhibitor:  0.002
CYP2D6-substrate:  0.085
CYP3A4-inhibitor:  0.686
CYP3A4-substrate:  0.829

ADMET: Excretion

Clearance (CL):  3.815
Half-life (T1/2):  0.255

ADMET: Toxicity

hERG Blockers:  0.152
Human Hepatotoxicity (H-HT):  0.397
Drug-inuced Liver Injury (DILI):  0.981
AMES Toxicity:  0.952
Rat Oral Acute Toxicity:  0.943
Maximum Recommended Daily Dose:  0.956
Skin Sensitization:  0.878
Carcinogencity:  0.92
Eye Corrosion:  0.003
Eye Irritation:  0.008
Respiratory Toxicity:  0.782

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  Natural Product: NPC187441

Natural Product ID:  NPC187441
Common Name*:   Saquayamycin J
IUPAC Name:   (3R,4aR,12bS)-9-[(2S,4aS,5aR,7R,9R,9aR,10aR)-2,9-dimethyl-3-oxo-4,4a,5a,6,7,9,9a,10a-octahydrodipyrano[4,2-a:4',3'-e][1,4]dioxin-7-yl]-4a,8,12b-trihydroxy-3-[(2S,5S,6S)-5-[(2S,5S,6S)-5-hydroxy-6-methyloxan-2-yl]oxy-6-methyloxan-2-yl]oxy-3-methyl-2,4-dihydrobenzo[a]anthracene-1,7,12-trione
Synonyms:   Saquayamycin J
Standard InCHIKey:  CVLVPRNGMHOWPC-QEBONLAISA-N
Standard InCHI:  InChI=1S/C43H52O16/c1-18-25(44)8-10-32(53-18)57-27-9-11-33(54-20(27)3)59-41(5)16-31(46)43(51)35-24(12-13-42(43,50)17-41)37(48)34-23(38(35)49)7-6-22(36(34)47)28-15-29-39(21(4)52-28)58-40-30(56-29)14-26(45)19(2)55-40/h6-7,12-13,18-21,25,27-30,32-33,39-40,44,47,50-51H,8-11,14-17H2,1-5H3/t18-,19-,20-,21+,25-,27-,28+,29+,30-,32-,33-,39+,40-,41-,42-,43-/m0/s1
SMILES:  C[C@H]1[C@H](CC[C@@H](O1)O[C@H]1CC[C@@H](O[C@H]1C)O[C@@]1(C)CC(=O)[C@@]2(C3=C(C=C[C@@]2(C1)O)C(=O)c1c(ccc([C@H]2C[C@@H]4[C@@H]([C@@H](C)O2)O[C@H]2[C@H](CC(=O)[C@H](C)O2)O4)c1O)C3=O)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL2071397
PubChem CID:   60201710
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0003415] Angucyclines

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10344559]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10344578]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10348041]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10604756]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10695669]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10724004]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10994816]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[11099231]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[11132958]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[11374972]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[11473415]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[14738393]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. Australian n.a. PMID[15497950]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[15813185]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[15844966]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[15974616]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16180833]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[1666120]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16724845]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16830891]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16872146]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17125235]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17315965]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17551212]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17608531]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17844998]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17887721]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17917237]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18044841]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. Indonesian n.a. PMID[18081255]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18081255]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18205372]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. Northwest Territories, Canada 1995 PMID[18327911]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18327911]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18666798]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18776684]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19007176]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19129624]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19191549]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19856955]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19883065]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[20092333]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[20545334]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[20836523]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21028889]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21028891]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[21090727]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21314175]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[21639131]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21728289]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. latex n.a. PMID[21751787]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21807523]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21873059]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. latex n.a. PMID[21879726]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[22145663]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22574670]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22583058]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22591466]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22758660]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22775474]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[23387796]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[23662937]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[24592993]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[24754815]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[24878306]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[24964393]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25211234]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25455147]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25495422]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25537064]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25918793]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25934225]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[26035239]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[26465675]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[26798949]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[26905826]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[31013087]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[31298537]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[31894983]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[32298122]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[8501018]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[8784423]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[8931733]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[8982334]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9031666]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9031676]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9066767]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9066768]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9186568]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9531983]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[9711246]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT306 Cell Line PC-3 Homo sapiens GI50 = 179.1 nM PMID[496830]
NPT397 Cell Line NCI-H460 Homo sapiens GI50 = 5694.0 nM PMID[496830]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC187441 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC283980
0.9819 High Similarity NPC115447
0.9819 High Similarity NPC470581
0.9819 High Similarity NPC83331
0.9819 High Similarity NPC470582
0.9701 High Similarity NPC266513
0.9699 High Similarity NPC19056
0.9699 High Similarity NPC470583
0.9697 High Similarity NPC270027
0.9518 High Similarity NPC470580
0.9412 High Similarity NPC72783
0.9408 High Similarity NPC176246
0.929 High Similarity NPC65118
0.9277 High Similarity NPC329647
0.9277 High Similarity NPC470735
0.9231 High Similarity NPC183441
0.9123 High Similarity NPC70862
0.9111 High Similarity NPC131405
0.9106 High Similarity NPC133775
0.9048 High Similarity NPC478026
0.9006 High Similarity NPC294501
0.9 High Similarity NPC108487
0.9 High Similarity NPC175477
0.8947 High Similarity NPC478021
0.8935 High Similarity NPC478020
0.8935 High Similarity NPC478022
0.8902 High Similarity NPC307754
0.8902 High Similarity NPC223735
0.8851 High Similarity NPC314489
0.8851 High Similarity NPC232818
0.8851 High Similarity NPC198893
0.8827 High Similarity NPC314672
0.8778 High Similarity NPC48474
0.8729 High Similarity NPC314459
0.8729 High Similarity NPC470199
0.8708 High Similarity NPC292706
0.8708 High Similarity NPC224557
0.8701 High Similarity NPC85316
0.8701 High Similarity NPC197357
0.8678 High Similarity NPC315619
0.8652 High Similarity NPC313452
0.8639 High Similarity NPC53139
0.8634 High Similarity NPC470195
0.8634 High Similarity NPC316274
0.8634 High Similarity NPC470196
0.8634 High Similarity NPC470193
0.8634 High Similarity NPC470200
0.8634 High Similarity NPC470197
0.8634 High Similarity NPC470194
0.8634 High Similarity NPC282474
0.8634 High Similarity NPC470198
0.8631 High Similarity NPC478027
0.8613 High Similarity NPC63470
0.8596 High Similarity NPC315221
0.8563 High Similarity NPC246274
0.8556 High Similarity NPC87583
0.8539 High Similarity NPC58538
0.8533 High Similarity NPC314687
0.8531 High Similarity NPC289876
0.8531 High Similarity NPC475246
0.8531 High Similarity NPC46958
0.8492 Intermediate Similarity NPC475161
0.8492 Intermediate Similarity NPC477860
0.8475 Intermediate Similarity NPC3718
0.8471 Intermediate Similarity NPC206641
0.8471 Intermediate Similarity NPC208651
0.8466 Intermediate Similarity NPC13989
0.8466 Intermediate Similarity NPC315889
0.8462 Intermediate Similarity NPC478035
0.8427 Intermediate Similarity NPC102053
0.8418 Intermediate Similarity NPC154986
0.8418 Intermediate Similarity NPC203751
0.8404 Intermediate Similarity NPC314941
0.8402 Intermediate Similarity NPC312482
0.8387 Intermediate Similarity NPC313274
0.8382 Intermediate Similarity NPC187934
0.8382 Intermediate Similarity NPC97637
0.838 Intermediate Similarity NPC477682
0.838 Intermediate Similarity NPC477683
0.837 Intermediate Similarity NPC478034
0.8362 Intermediate Similarity NPC30432
0.8362 Intermediate Similarity NPC5029
0.8362 Intermediate Similarity NPC76128
0.8362 Intermediate Similarity NPC271385
0.8362 Intermediate Similarity NPC111536
0.8353 Intermediate Similarity NPC477736
0.8353 Intermediate Similarity NPC3449
0.8352 Intermediate Similarity NPC241847
0.8333 Intermediate Similarity NPC299149
0.8333 Intermediate Similarity NPC277710
0.8333 Intermediate Similarity NPC153578
0.8333 Intermediate Similarity NPC114257
0.8333 Intermediate Similarity NPC475407
0.8324 Intermediate Similarity NPC475233
0.8323 Intermediate Similarity NPC112816
0.8315 Intermediate Similarity NPC199357
0.8315 Intermediate Similarity NPC470336
0.8315 Intermediate Similarity NPC85368
0.8315 Intermediate Similarity NPC213052
0.8315 Intermediate Similarity NPC470335
0.8313 Intermediate Similarity NPC136878
0.8304 Intermediate Similarity NPC148323
0.8304 Intermediate Similarity NPC283480
0.8297 Intermediate Similarity NPC148710
0.8294 Intermediate Similarity NPC477735
0.8287 Intermediate Similarity NPC470448
0.8287 Intermediate Similarity NPC470453
0.8287 Intermediate Similarity NPC164047
0.8287 Intermediate Similarity NPC208069
0.8287 Intermediate Similarity NPC470452
0.8286 Intermediate Similarity NPC102465
0.8276 Intermediate Similarity NPC146837
0.8276 Intermediate Similarity NPC212099
0.8276 Intermediate Similarity NPC101116
0.8276 Intermediate Similarity NPC278329
0.8274 Intermediate Similarity NPC44378
0.8274 Intermediate Similarity NPC280753
0.827 Intermediate Similarity NPC321046
0.8268 Intermediate Similarity NPC186800
0.8268 Intermediate Similarity NPC470667
0.8268 Intermediate Similarity NPC68381
0.8261 Intermediate Similarity NPC205721
0.8258 Intermediate Similarity NPC473113
0.8256 Intermediate Similarity NPC257309
0.8253 Intermediate Similarity NPC474630
0.8249 Intermediate Similarity NPC222455
0.8249 Intermediate Similarity NPC473095
0.8249 Intermediate Similarity NPC5319
0.8249 Intermediate Similarity NPC473096
0.8246 Intermediate Similarity NPC174599
0.8246 Intermediate Similarity NPC192219
0.8246 Intermediate Similarity NPC82190
0.8239 Intermediate Similarity NPC477473
0.8239 Intermediate Similarity NPC477469
0.8239 Intermediate Similarity NPC477466
0.8239 Intermediate Similarity NPC477471
0.8232 Intermediate Similarity NPC245059
0.8232 Intermediate Similarity NPC84494
0.8232 Intermediate Similarity NPC473895
0.8232 Intermediate Similarity NPC212290
0.8232 Intermediate Similarity NPC192539
0.8222 Intermediate Similarity NPC202908
0.8222 Intermediate Similarity NPC475613
0.8222 Intermediate Similarity NPC122467
0.8222 Intermediate Similarity NPC14187
0.8222 Intermediate Similarity NPC48984
0.8222 Intermediate Similarity NPC292019
0.8222 Intermediate Similarity NPC469345
0.8218 Intermediate Similarity NPC471493
0.8218 Intermediate Similarity NPC317544
0.8212 Intermediate Similarity NPC472054
0.8212 Intermediate Similarity NPC98776
0.8212 Intermediate Similarity NPC470438
0.8207 Intermediate Similarity NPC294863
0.8207 Intermediate Similarity NPC282636
0.8207 Intermediate Similarity NPC105591
0.8193 Intermediate Similarity NPC29932
0.8192 Intermediate Similarity NPC473094
0.8191 Intermediate Similarity NPC109403
0.8191 Intermediate Similarity NPC314738
0.8191 Intermediate Similarity NPC261012
0.8187 Intermediate Similarity NPC209393
0.8187 Intermediate Similarity NPC205172
0.8182 Intermediate Similarity NPC314020
0.8182 Intermediate Similarity NPC472049
0.8182 Intermediate Similarity NPC178281
0.8182 Intermediate Similarity NPC99216
0.8177 Intermediate Similarity NPC89052
0.8177 Intermediate Similarity NPC470334
0.8177 Intermediate Similarity NPC47191
0.8177 Intermediate Similarity NPC475261
0.8177 Intermediate Similarity NPC251417
0.8176 Intermediate Similarity NPC205918
0.8172 Intermediate Similarity NPC264302
0.8171 Intermediate Similarity NPC216752
0.8167 Intermediate Similarity NPC98667
0.8167 Intermediate Similarity NPC86809
0.8167 Intermediate Similarity NPC232412
0.8167 Intermediate Similarity NPC63105
0.8167 Intermediate Similarity NPC102028
0.8167 Intermediate Similarity NPC294149
0.8167 Intermediate Similarity NPC294629
0.8167 Intermediate Similarity NPC146803
0.8167 Intermediate Similarity NPC108202
0.8161 Intermediate Similarity NPC284495
0.8156 Intermediate Similarity NPC257011
0.8156 Intermediate Similarity NPC137871
0.8156 Intermediate Similarity NPC9002
0.8156 Intermediate Similarity NPC288152
0.8152 Intermediate Similarity NPC33083
0.8152 Intermediate Similarity NPC475220
0.8152 Intermediate Similarity NPC473686
0.8152 Intermediate Similarity NPC197972
0.8152 Intermediate Similarity NPC221140
0.8152 Intermediate Similarity NPC229817
0.8152 Intermediate Similarity NPC475352
0.815 Intermediate Similarity NPC472889
0.815 Intermediate Similarity NPC29552
0.8146 Intermediate Similarity NPC328321
0.8146 Intermediate Similarity NPC137460

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC187441 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.882 High Similarity NPD7879 Clinical (unspecified phase)
0.8579 High Similarity NPD7700 Phase 2
0.8579 High Similarity NPD7699 Phase 2
0.8415 Intermediate Similarity NPD6534 Approved
0.8415 Intermediate Similarity NPD6535 Approved
0.8404 Intermediate Similarity NPD8319 Approved
0.8404 Intermediate Similarity NPD8320 Phase 1
0.8389 Intermediate Similarity NPD8150 Discontinued
0.8254 Intermediate Similarity NPD7697 Approved
0.8254 Intermediate Similarity NPD7698 Approved
0.8254 Intermediate Similarity NPD7435 Discontinued
0.8254 Intermediate Similarity NPD7696 Phase 3
0.8249 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.8191 Intermediate Similarity NPD6779 Approved
0.8191 Intermediate Similarity NPD6777 Approved
0.8191 Intermediate Similarity NPD6782 Approved
0.8191 Intermediate Similarity NPD6781 Approved
0.8191 Intermediate Similarity NPD6778 Approved
0.8191 Intermediate Similarity NPD6776 Approved
0.8191 Intermediate Similarity NPD6780 Approved
0.8177 Intermediate Similarity NPD7701 Phase 2
0.8167 Intermediate Similarity NPD7808 Phase 3
0.8122 Intermediate Similarity NPD8312 Approved
0.8122 Intermediate Similarity NPD8313 Approved
0.8115 Intermediate Similarity NPD7870 Phase 2
0.8115 Intermediate Similarity NPD7871 Phase 2
0.8111 Intermediate Similarity NPD7251 Discontinued
0.8093 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.8093 Intermediate Similarity NPD7874 Approved
0.8056 Intermediate Similarity NPD6797 Phase 2
0.8 Intermediate Similarity NPD7074 Phase 3
0.7959 Intermediate Similarity NPD7801 Approved
0.7903 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7901 Intermediate Similarity NPD7472 Approved
0.7889 Intermediate Similarity NPD3751 Discontinued
0.7872 Intermediate Similarity NPD6213 Phase 3
0.7872 Intermediate Similarity NPD6214 Clinical (unspecified phase)
0.7872 Intermediate Similarity NPD6212 Phase 3
0.7857 Intermediate Similarity NPD8151 Discontinued
0.7845 Intermediate Similarity NPD7054 Approved
0.7795 Intermediate Similarity NPD7211 Clinical (unspecified phase)
0.7772 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.774 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.7732 Intermediate Similarity NPD6823 Phase 2
0.7696 Intermediate Similarity NPD8155 Clinical (unspecified phase)
0.7688 Intermediate Similarity NPD7783 Phase 2
0.7688 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.764 Intermediate Similarity NPD7075 Discontinued
0.7622 Intermediate Similarity NPD6559 Discontinued
0.76 Intermediate Similarity NPD4380 Phase 2
0.7596 Intermediate Similarity NPD3818 Discontinued
0.7582 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7582 Intermediate Similarity NPD6166 Phase 2
0.7582 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7569 Intermediate Similarity NPD3787 Discontinued
0.7553 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7541 Intermediate Similarity NPD7473 Discontinued
0.7514 Intermediate Similarity NPD6959 Discontinued
0.7513 Intermediate Similarity NPD8434 Phase 2
0.7473 Intermediate Similarity NPD6232 Discontinued
0.7472 Intermediate Similarity NPD7819 Suspended
0.7472 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.7433 Intermediate Similarity NPD8368 Discontinued
0.7405 Intermediate Similarity NPD7799 Discontinued
0.738 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7374 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.7366 Intermediate Similarity NPD5844 Phase 1
0.7333 Intermediate Similarity NPD5402 Approved
0.7318 Intermediate Similarity NPD6801 Discontinued
0.7316 Intermediate Similarity NPD8407 Phase 2
0.7312 Intermediate Similarity NPD7228 Approved
0.7268 Intermediate Similarity NPD5494 Approved
0.7264 Intermediate Similarity NPD8059 Phase 3
0.7264 Intermediate Similarity NPD8058 Clinical (unspecified phase)
0.7241 Intermediate Similarity NPD6190 Approved
0.7238 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.7222 Intermediate Similarity NPD1934 Approved
0.7216 Intermediate Similarity NPD2532 Approved
0.7216 Intermediate Similarity NPD2533 Approved
0.7216 Intermediate Similarity NPD2534 Approved
0.7198 Intermediate Similarity NPD3882 Suspended
0.7193 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.7182 Intermediate Similarity NPD8455 Phase 2
0.7181 Intermediate Similarity NPD8470 Clinical (unspecified phase)
0.7159 Intermediate Similarity NPD7390 Discontinued
0.7158 Intermediate Similarity NPD7685 Pre-registration
0.7151 Intermediate Similarity NPD3226 Approved
0.7143 Intermediate Similarity NPD3817 Phase 2
0.7119 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.7111 Intermediate Similarity NPD6599 Discontinued
0.711 Intermediate Similarity NPD7266 Discontinued
0.7104 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7102 Intermediate Similarity NPD3300 Phase 2
0.7088 Intermediate Similarity NPD2801 Approved
0.7077 Intermediate Similarity NPD8435 Approved
0.7077 Intermediate Similarity NPD8361 Approved
0.7077 Intermediate Similarity NPD8360 Approved
0.7068 Intermediate Similarity NPD7240 Approved
0.7056 Intermediate Similarity NPD7458 Discontinued
0.7039 Intermediate Similarity NPD5403 Approved
0.7022 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.7022 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.7021 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7015 Intermediate Similarity NPD8486 Clinical (unspecified phase)
0.7011 Intermediate Similarity NPD2346 Discontinued
0.6978 Remote Similarity NPD7411 Suspended
0.6966 Remote Similarity NPD6799 Approved
0.6959 Remote Similarity NPD7966 Clinical (unspecified phase)
0.6954 Remote Similarity NPD5405 Approved
0.6954 Remote Similarity NPD5408 Approved
0.6954 Remote Similarity NPD5404 Approved
0.6954 Remote Similarity NPD5406 Approved
0.694 Remote Similarity NPD37 Approved
0.6935 Remote Similarity NPD6234 Discontinued
0.6927 Remote Similarity NPD5401 Approved
0.6919 Remote Similarity NPD4966 Approved
0.6919 Remote Similarity NPD4965 Approved
0.6919 Remote Similarity NPD4967 Phase 2
0.6902 Remote Similarity NPD1465 Phase 2
0.6897 Remote Similarity NPD651 Clinical (unspecified phase)
0.6893 Remote Similarity NPD1878 Clinical (unspecified phase)
0.6893 Remote Similarity NPD7584 Approved
0.6889 Remote Similarity NPD1512 Approved
0.6884 Remote Similarity NPD5619 Clinical (unspecified phase)
0.6881 Remote Similarity NPD8285 Discontinued
0.6875 Remote Similarity NPD1549 Phase 2
0.6866 Remote Similarity NPD8485 Approved
0.6857 Remote Similarity NPD2935 Discontinued
0.6856 Remote Similarity NPD5028 Approved
0.6856 Remote Similarity NPD4955 Approved
0.6856 Remote Similarity NPD5034 Approved
0.6856 Remote Similarity NPD4954 Approved
0.6856 Remote Similarity NPD36 Approved
0.6856 Remote Similarity NPD5026 Approved
0.6845 Remote Similarity NPD1470 Approved
0.6836 Remote Similarity NPD6674 Discontinued
0.6828 Remote Similarity NPD7768 Phase 2
0.6825 Remote Similarity NPD5711 Approved
0.6825 Remote Similarity NPD5710 Approved
0.6825 Remote Similarity NPD7930 Approved
0.6818 Remote Similarity NPD1552 Clinical (unspecified phase)
0.6818 Remote Similarity NPD1550 Clinical (unspecified phase)
0.6816 Remote Similarity NPD7236 Approved
0.6813 Remote Similarity NPD7239 Suspended
0.6804 Remote Similarity NPD5030 Phase 2
0.6802 Remote Similarity NPD8424 Clinical (unspecified phase)
0.6802 Remote Similarity NPD5037 Approved
0.6802 Remote Similarity NPD5038 Approved
0.68 Remote Similarity NPD1510 Phase 2
0.6798 Remote Similarity NPD4628 Phase 3
0.6798 Remote Similarity NPD8166 Discontinued
0.6791 Remote Similarity NPD3749 Approved
0.6791 Remote Similarity NPD8366 Approved
0.6791 Remote Similarity NPD7907 Approved
0.6789 Remote Similarity NPD7184 Clinical (unspecified phase)
0.6782 Remote Similarity NPD1607 Approved
0.6782 Remote Similarity NPD8090 Clinical (unspecified phase)
0.678 Remote Similarity NPD970 Clinical (unspecified phase)
0.6778 Remote Similarity NPD1511 Approved
0.6776 Remote Similarity NPD5808 Clinical (unspecified phase)
0.6763 Remote Similarity NPD943 Approved
0.6761 Remote Similarity NPD8404 Phase 2
0.6755 Remote Similarity NPD5537 Clinical (unspecified phase)
0.6751 Remote Similarity NPD5036 Approved
0.6735 Remote Similarity NPD5035 Approved
0.6724 Remote Similarity NPD230 Phase 1
0.6704 Remote Similarity NPD6398 Clinical (unspecified phase)
0.6704 Remote Similarity NPD3750 Approved
0.6684 Remote Similarity NPD7199 Phase 2
0.6684 Remote Similarity NPD1247 Approved
0.6667 Remote Similarity NPD7680 Approved
0.6667 Remote Similarity NPD2796 Approved
0.6667 Remote Similarity NPD6099 Approved
0.6667 Remote Similarity NPD8491 Approved
0.6667 Remote Similarity NPD1240 Approved
0.6667 Remote Similarity NPD6100 Approved
0.6667 Remote Similarity NPD6980 Clinical (unspecified phase)
0.6648 Remote Similarity NPD2800 Approved
0.6634 Remote Similarity NPD7237 Clinical (unspecified phase)
0.663 Remote Similarity NPD1653 Approved
0.6615 Remote Similarity NPD3926 Phase 2
0.6607 Remote Similarity NPD1201 Approved
0.6603 Remote Similarity NPD7999 Approved
0.6602 Remote Similarity NPD7501 Clinical (unspecified phase)
0.6591 Remote Similarity NPD6651 Approved
0.659 Remote Similarity NPD5952 Clinical (unspecified phase)
0.6579 Remote Similarity NPD919 Approved
0.6557 Remote Similarity NPD7004 Clinical (unspecified phase)
0.6556 Remote Similarity NPD7421 Clinical (unspecified phase)
0.6552 Remote Similarity NPD3764 Approved
0.6548 Remote Similarity NPD5027 Approved
0.6548 Remote Similarity NPD5029 Approved
0.6548 Remote Similarity NPD5031 Approved
0.6544 Remote Similarity NPD4111 Phase 1
0.6544 Remote Similarity NPD4665 Approved
0.654 Remote Similarity NPD7585 Approved
0.6503 Remote Similarity NPD6143 Clinical (unspecified phase)
0.6497 Remote Similarity NPD5953 Discontinued
0.6493 Remote Similarity NPD7583 Approved
0.6488 Remote Similarity NPD5126 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data