Structure

Physi-Chem Properties

Molecular Weight:  424.26
Volume:  478.424
LogP:  4.96
LogD:  3.323
LogS:  -4.044
# Rotatable Bonds:  11
TPSA:  74.6
# H-Bond Aceptor:  4
# H-Bond Donor:  2
# Rings:  1
# Heavy Atoms:  4

MedChem Properties

QED Drug-Likeness Score:  0.243
Synthetic Accessibility Score:  3.419
Fsp3:  0.407
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Rejected
BMS Rule:  1
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.014
MDCK Permeability:  1.919574788189493e-05
Pgp-inhibitor:  0.944
Pgp-substrate:  0.128
Human Intestinal Absorption (HIA):  0.015
20% Bioavailability (F20%):  0.962
30% Bioavailability (F30%):  0.224

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.011
Plasma Protein Binding (PPB):  97.45433807373047%
Volume Distribution (VD):  1.175
Pgp-substrate:  0.7974182963371277%

ADMET: Metabolism

CYP1A2-inhibitor:  0.488
CYP1A2-substrate:  0.932
CYP2C19-inhibitor:  0.892
CYP2C19-substrate:  0.477
CYP2C9-inhibitor:  0.926
CYP2C9-substrate:  0.956
CYP2D6-inhibitor:  0.943
CYP2D6-substrate:  0.866
CYP3A4-inhibitor:  0.788
CYP3A4-substrate:  0.426

ADMET: Excretion

Clearance (CL):  6.887
Half-life (T1/2):  0.964

ADMET: Toxicity

hERG Blockers:  0.013
Human Hepatotoxicity (H-HT):  0.32
Drug-inuced Liver Injury (DILI):  0.017
AMES Toxicity:  0.008
Rat Oral Acute Toxicity:  0.049
Maximum Recommended Daily Dose:  0.921
Skin Sensitization:  0.976
Carcinogencity:  0.605
Eye Corrosion:  0.886
Eye Irritation:  0.936
Respiratory Toxicity:  0.91

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC208223

Natural Product ID:  NPC208223
Common Name*:   Dehydrozaluzanin C
IUPAC Name:   (3aS,6aR,9aR,9bS)-3,6,9-trimethylidene-4,5,6a,7,9a,9b-hexahydro-3aH-azuleno[4,5-b]furan-2,8-dione
Synonyms:  
Standard InCHIKey:  KNQLJJDOGQIMMT-IMIFBBOLSA-N
Standard InCHI:  InChI=1S/C15H16O3/c1-7-4-5-10-8(2)15(17)18-14(10)13-9(3)12(16)6-11(7)13/h10-11,13-14H,1-6H2/t10-,11-,13-,14-/m0/s1
SMILES:  C=C1C(=O)C[C@@H]2[C@H]1[C@H]1OC(=O)C(=C)[C@@H]1CCC2=C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL2270297
PubChem CID:   10538257
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001283] Terpene lactones
          • [CHEMONTID:0001543] Sesquiterpene lactones
            • [CHEMONTID:0001770] Guaianolides and derivatives

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO18671 Saussurea involucrata Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[26214875]
NPO18671 Saussurea involucrata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18671 Saussurea involucrata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18671 Saussurea involucrata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO18671 Saussurea involucrata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT855 Organism Allium cepa Allium cepa Inhibition > 40.0 % PMID[528798]
NPT119 Organism Triticum aestivum Triticum aestivum Inhibition > 40.0 % PMID[528798]
NPT959 Organism Solanum lycopersicum Solanum lycopersicum Inhibition > 40.0 % PMID[528798]
NPT3130 Organism Lepidium sativum Lepidium sativum Inhibition > 40.0 % PMID[528798]
NPT364 Organism Lactuca sativa Lactuca sativa Inhibition > 40.0 % PMID[528798]
NPT855 Organism Allium cepa Allium cepa Activity > 40.0 % PMID[528798]
NPT119 Organism Triticum aestivum Triticum aestivum Activity > 40.0 % PMID[528798]
NPT959 Organism Solanum lycopersicum Solanum lycopersicum Activity > 40.0 % PMID[528798]
NPT3130 Organism Lepidium sativum Lepidium sativum Activity > 40.0 % PMID[528798]
NPT364 Organism Lactuca sativa Lactuca sativa Activity > 40.0 % PMID[528798]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC208223 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9595 High Similarity NPC293418
0.9595 High Similarity NPC73052
0.9595 High Similarity NPC290508
0.9577 High Similarity NPC143979
0.9577 High Similarity NPC320537
0.9221 High Similarity NPC54468
0.9079 High Similarity NPC6823
0.8875 High Similarity NPC309757
0.8875 High Similarity NPC236692
0.8875 High Similarity NPC238593
0.8831 High Similarity NPC74673
0.8831 High Similarity NPC69271
0.8765 High Similarity NPC118601
0.875 High Similarity NPC5714
0.8734 High Similarity NPC39588
0.8718 High Similarity NPC10276
0.8718 High Similarity NPC35089
0.8701 High Similarity NPC182550
0.8659 High Similarity NPC178875
0.8608 High Similarity NPC246076
0.859 High Similarity NPC276356
0.8554 High Similarity NPC12872
0.8554 High Similarity NPC168679
0.8537 High Similarity NPC270270
0.8519 High Similarity NPC161957
0.85 High Similarity NPC245665
0.8395 Intermediate Similarity NPC194859
0.8395 Intermediate Similarity NPC224386
0.8354 Intermediate Similarity NPC51507
0.8354 Intermediate Similarity NPC302426
0.8353 Intermediate Similarity NPC286341
0.8353 Intermediate Similarity NPC191339
0.8313 Intermediate Similarity NPC201658
0.8293 Intermediate Similarity NPC284534
0.8293 Intermediate Similarity NPC204105
0.8293 Intermediate Similarity NPC300082
0.8272 Intermediate Similarity NPC215294
0.8256 Intermediate Similarity NPC153590
0.8256 Intermediate Similarity NPC200237
0.825 Intermediate Similarity NPC47635
0.8205 Intermediate Similarity NPC65603
0.8193 Intermediate Similarity NPC187661
0.8193 Intermediate Similarity NPC304558
0.8193 Intermediate Similarity NPC56593
0.8193 Intermediate Similarity NPC64153
0.8182 Intermediate Similarity NPC226669
0.8182 Intermediate Similarity NPC193351
0.8182 Intermediate Similarity NPC138408
0.8171 Intermediate Similarity NPC156485
0.8125 Intermediate Similarity NPC223904
0.8095 Intermediate Similarity NPC190753
0.8095 Intermediate Similarity NPC24728
0.8072 Intermediate Similarity NPC235792
0.8072 Intermediate Similarity NPC21471
0.8072 Intermediate Similarity NPC33570
0.8068 Intermediate Similarity NPC163228
0.8052 Intermediate Similarity NPC469643
0.8052 Intermediate Similarity NPC469641
0.8046 Intermediate Similarity NPC473234
0.8046 Intermediate Similarity NPC135776
0.8046 Intermediate Similarity NPC60386
0.8046 Intermediate Similarity NPC308656
0.8046 Intermediate Similarity NPC473273
0.8046 Intermediate Similarity NPC473263
0.8 Intermediate Similarity NPC217983
0.8 Intermediate Similarity NPC79549
0.8 Intermediate Similarity NPC207114
0.8 Intermediate Similarity NPC471149
0.7978 Intermediate Similarity NPC91771
0.7978 Intermediate Similarity NPC142529
0.7976 Intermediate Similarity NPC470242
0.7976 Intermediate Similarity NPC107787
0.7976 Intermediate Similarity NPC67493
0.7975 Intermediate Similarity NPC15975
0.7975 Intermediate Similarity NPC195785
0.7975 Intermediate Similarity NPC476794
0.7975 Intermediate Similarity NPC470240
0.7955 Intermediate Similarity NPC473331
0.7952 Intermediate Similarity NPC115786
0.7949 Intermediate Similarity NPC155587
0.7931 Intermediate Similarity NPC74103
0.7931 Intermediate Similarity NPC150978
0.7931 Intermediate Similarity NPC70595
0.7931 Intermediate Similarity NPC123177
0.7907 Intermediate Similarity NPC472872
0.7907 Intermediate Similarity NPC155935
0.7907 Intermediate Similarity NPC215556
0.7907 Intermediate Similarity NPC283409
0.7907 Intermediate Similarity NPC38392
0.7875 Intermediate Similarity NPC472960
0.7865 Intermediate Similarity NPC476053
0.7857 Intermediate Similarity NPC78089
0.7848 Intermediate Similarity NPC235906
0.7816 Intermediate Similarity NPC253144
0.7816 Intermediate Similarity NPC19087
0.7816 Intermediate Similarity NPC62815
0.7816 Intermediate Similarity NPC216284
0.7816 Intermediate Similarity NPC35809
0.7816 Intermediate Similarity NPC297474
0.7816 Intermediate Similarity NPC54065
0.7805 Intermediate Similarity NPC126248
0.7805 Intermediate Similarity NPC301477
0.7805 Intermediate Similarity NPC25684
0.7805 Intermediate Similarity NPC281949
0.7791 Intermediate Similarity NPC224652
0.7791 Intermediate Similarity NPC91248
0.7778 Intermediate Similarity NPC63649
0.7778 Intermediate Similarity NPC470239
0.7778 Intermediate Similarity NPC264227
0.7778 Intermediate Similarity NPC472965
0.7778 Intermediate Similarity NPC469690
0.7778 Intermediate Similarity NPC470244
0.7778 Intermediate Similarity NPC469620
0.775 Intermediate Similarity NPC103987
0.775 Intermediate Similarity NPC53581
0.7727 Intermediate Similarity NPC293001
0.7727 Intermediate Similarity NPC63193
0.7727 Intermediate Similarity NPC284185
0.7727 Intermediate Similarity NPC184063
0.7727 Intermediate Similarity NPC35959
0.7727 Intermediate Similarity NPC171360
0.7727 Intermediate Similarity NPC133888
0.7727 Intermediate Similarity NPC57304
0.7727 Intermediate Similarity NPC155215
0.7727 Intermediate Similarity NPC29821
0.7722 Intermediate Similarity NPC471491
0.7711 Intermediate Similarity NPC173609
0.7703 Intermediate Similarity NPC157518
0.7701 Intermediate Similarity NPC32922
0.7701 Intermediate Similarity NPC268298
0.7701 Intermediate Similarity NPC4986
0.7692 Intermediate Similarity NPC213947
0.7692 Intermediate Similarity NPC108475
0.7692 Intermediate Similarity NPC471150
0.7692 Intermediate Similarity NPC170143
0.7683 Intermediate Similarity NPC474981
0.7683 Intermediate Similarity NPC258965
0.7683 Intermediate Similarity NPC156658
0.7667 Intermediate Similarity NPC275960
0.7667 Intermediate Similarity NPC48803
0.7667 Intermediate Similarity NPC193645
0.7667 Intermediate Similarity NPC90121
0.7654 Intermediate Similarity NPC299235
0.7647 Intermediate Similarity NPC110405
0.764 Intermediate Similarity NPC258216
0.7634 Intermediate Similarity NPC171759
0.7625 Intermediate Similarity NPC472959
0.7619 Intermediate Similarity NPC128246
0.7619 Intermediate Similarity NPC272814
0.7619 Intermediate Similarity NPC194637
0.7614 Intermediate Similarity NPC129419
0.7614 Intermediate Similarity NPC301969
0.7614 Intermediate Similarity NPC37607
0.759 Intermediate Similarity NPC39411
0.759 Intermediate Similarity NPC38642
0.759 Intermediate Similarity NPC255580
0.7586 Intermediate Similarity NPC53158
0.7564 Intermediate Similarity NPC163003
0.7561 Intermediate Similarity NPC617
0.7558 Intermediate Similarity NPC284902
0.7532 Intermediate Similarity NPC296522
0.7532 Intermediate Similarity NPC144511
0.7531 Intermediate Similarity NPC122264
0.7531 Intermediate Similarity NPC187568
0.7531 Intermediate Similarity NPC41780
0.7529 Intermediate Similarity NPC138647
0.7529 Intermediate Similarity NPC219011
0.7529 Intermediate Similarity NPC470238
0.7528 Intermediate Similarity NPC133698
0.7528 Intermediate Similarity NPC261607
0.7528 Intermediate Similarity NPC111114
0.7528 Intermediate Similarity NPC475925
0.7528 Intermediate Similarity NPC131209
0.7528 Intermediate Similarity NPC300312
0.7527 Intermediate Similarity NPC186861
0.7527 Intermediate Similarity NPC471381
0.75 Intermediate Similarity NPC311904
0.75 Intermediate Similarity NPC226988
0.75 Intermediate Similarity NPC288699
0.75 Intermediate Similarity NPC169205
0.7473 Intermediate Similarity NPC167893
0.7473 Intermediate Similarity NPC472873
0.7473 Intermediate Similarity NPC475900
0.7471 Intermediate Similarity NPC186148
0.7471 Intermediate Similarity NPC475703
0.7471 Intermediate Similarity NPC237540
0.7468 Intermediate Similarity NPC269206
0.7468 Intermediate Similarity NPC58956
0.7468 Intermediate Similarity NPC295633
0.7468 Intermediate Similarity NPC472956
0.7444 Intermediate Similarity NPC475700
0.7444 Intermediate Similarity NPC472874
0.7442 Intermediate Similarity NPC165162
0.7439 Intermediate Similarity NPC128276
0.7436 Intermediate Similarity NPC472955
0.7436 Intermediate Similarity NPC18543
0.7419 Intermediate Similarity NPC54843
0.7419 Intermediate Similarity NPC141191
0.7416 Intermediate Similarity NPC152467
0.7412 Intermediate Similarity NPC318468

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC208223 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.7701 Intermediate Similarity NPD1695 Approved
0.7667 Intermediate Similarity NPD1698 Clinical (unspecified phase)
0.7241 Intermediate Similarity NPD1733 Clinical (unspecified phase)
0.7045 Intermediate Similarity NPD1694 Approved
0.6667 Remote Similarity NPD5785 Approved
0.6593 Remote Similarity NPD5786 Approved
0.6569 Remote Similarity NPD7899 Clinical (unspecified phase)
0.6517 Remote Similarity NPD6435 Approved
0.6517 Remote Similarity NPD4752 Clinical (unspecified phase)
0.6484 Remote Similarity NPD5363 Approved
0.6452 Remote Similarity NPD6903 Approved
0.6444 Remote Similarity NPD5362 Discontinued
0.6413 Remote Similarity NPD7521 Approved
0.6413 Remote Similarity NPD6409 Approved
0.6413 Remote Similarity NPD7146 Approved
0.6413 Remote Similarity NPD5330 Approved
0.6413 Remote Similarity NPD7334 Approved
0.6413 Remote Similarity NPD6684 Approved
0.6404 Remote Similarity NPD5369 Approved
0.6351 Remote Similarity NPD9298 Approved
0.6333 Remote Similarity NPD4270 Approved
0.6333 Remote Similarity NPD4269 Approved
0.6311 Remote Similarity NPD6008 Approved
0.6304 Remote Similarity NPD6082 Clinical (unspecified phase)
0.6292 Remote Similarity NPD5368 Approved
0.6277 Remote Similarity NPD7513 Clinical (unspecified phase)
0.6186 Remote Similarity NPD6399 Phase 3
0.6154 Remote Similarity NPD5209 Approved
0.6146 Remote Similarity NPD5207 Approved
0.6111 Remote Similarity NPD4252 Approved
0.6111 Remote Similarity NPD6053 Discontinued
0.6105 Remote Similarity NPD6672 Approved
0.6105 Remote Similarity NPD5737 Approved
0.6087 Remote Similarity NPD7154 Phase 3
0.6082 Remote Similarity NPD5693 Phase 1
0.6075 Remote Similarity NPD6371 Approved
0.6067 Remote Similarity NPD5784 Clinical (unspecified phase)
0.6061 Remote Similarity NPD6356 Clinical (unspecified phase)
0.6044 Remote Similarity NPD4790 Discontinued
0.5976 Remote Similarity NPD2685 Clinical (unspecified phase)
0.596 Remote Similarity NPD6001 Approved
0.5934 Remote Similarity NPD5790 Clinical (unspecified phase)
0.5918 Remote Similarity NPD8034 Phase 2
0.5918 Remote Similarity NPD8035 Phase 2
0.5914 Remote Similarity NPD5331 Approved
0.5914 Remote Similarity NPD5332 Approved
0.5909 Remote Similarity NPD8039 Approved
0.5895 Remote Similarity NPD4249 Approved
0.5882 Remote Similarity NPD4225 Approved
0.5876 Remote Similarity NPD6101 Approved
0.5876 Remote Similarity NPD5764 Clinical (unspecified phase)
0.5859 Remote Similarity NPD5778 Approved
0.5859 Remote Similarity NPD5779 Approved
0.5833 Remote Similarity NPD3573 Approved
0.5833 Remote Similarity NPD4250 Approved
0.5833 Remote Similarity NPD4251 Approved
0.5816 Remote Similarity NPD6698 Approved
0.5816 Remote Similarity NPD46 Approved
0.5806 Remote Similarity NPD3667 Approved
0.58 Remote Similarity NPD5282 Discontinued
0.5794 Remote Similarity NPD5697 Approved
0.5789 Remote Similarity NPD7520 Clinical (unspecified phase)
0.5783 Remote Similarity NPD9496 Clinical (unspecified phase)
0.5773 Remote Similarity NPD5208 Approved
0.5761 Remote Similarity NPD4821 Approved
0.5761 Remote Similarity NPD4820 Approved
0.5761 Remote Similarity NPD4822 Approved
0.5761 Remote Similarity NPD4819 Approved
0.5758 Remote Similarity NPD6079 Approved
0.5758 Remote Similarity NPD6411 Approved
0.5752 Remote Similarity NPD7115 Discovery
0.575 Remote Similarity NPD3198 Approved
0.5747 Remote Similarity NPD5777 Approved
0.5745 Remote Similarity NPD4788 Approved
0.5743 Remote Similarity NPD5695 Phase 3
0.5741 Remote Similarity NPD6011 Approved
0.5741 Remote Similarity NPD6899 Approved
0.5741 Remote Similarity NPD7320 Approved
0.5741 Remote Similarity NPD6881 Approved
0.5729 Remote Similarity NPD3618 Phase 1
0.5729 Remote Similarity NPD6098 Approved
0.5728 Remote Similarity NPD7638 Approved
0.5728 Remote Similarity NPD5696 Approved
0.5727 Remote Similarity NPD6649 Approved
0.5727 Remote Similarity NPD6650 Approved
0.5714 Remote Similarity NPD6673 Approved
0.5714 Remote Similarity NPD4271 Approved
0.5714 Remote Similarity NPD5328 Approved
0.5714 Remote Similarity NPD4268 Approved
0.5714 Remote Similarity NPD6904 Approved
0.5714 Remote Similarity NPD6080 Approved
0.5701 Remote Similarity NPD6402 Approved
0.5701 Remote Similarity NPD7128 Approved
0.5701 Remote Similarity NPD6675 Approved
0.5701 Remote Similarity NPD5739 Approved
0.5688 Remote Similarity NPD6014 Approved
0.5688 Remote Similarity NPD6373 Approved
0.5688 Remote Similarity NPD6013 Approved
0.5688 Remote Similarity NPD6372 Approved
0.5688 Remote Similarity NPD6012 Approved
0.5684 Remote Similarity NPD4786 Approved
0.5684 Remote Similarity NPD3666 Approved
0.5684 Remote Similarity NPD3665 Phase 1
0.5684 Remote Similarity NPD3133 Approved
0.5684 Remote Similarity NPD3668 Phase 3
0.5673 Remote Similarity NPD7639 Approved
0.5673 Remote Similarity NPD7640 Approved
0.5657 Remote Similarity NPD5692 Phase 3
0.5648 Remote Similarity NPD5701 Approved
0.5644 Remote Similarity NPD7900 Approved
0.5644 Remote Similarity NPD7901 Clinical (unspecified phase)
0.5636 Remote Similarity NPD7102 Approved
0.5636 Remote Similarity NPD6883 Approved
0.5636 Remote Similarity NPD7290 Approved
0.5631 Remote Similarity NPD6083 Phase 2
0.5631 Remote Similarity NPD6084 Phase 2
0.56 Remote Similarity NPD7983 Approved
0.56 Remote Similarity NPD5694 Approved
0.56 Remote Similarity NPD6050 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data