Links to Biocomputing Research Groups:

• Biomolecular Engineering Research Center at Boston University. Methods of pattern detection in DNA, RNA and protein sequences. Analysis of structure, function and regulation of biomolecules.
  
  

• Zuker Group at Washington University at St. Louis. Computational methods for RNA structure prediction, algorithms for nucleic acid and protein sequence analysis.
  
  

• Jeffrey Skolnick's Research Group. Computational genomics, bioinformatics, protein function prediction, protein structure prediction, metabolic pathways, algorithms for large-scale computer simulations of proteins
  
  

• Karplus Group at Harvard University. Molecular modeling at Harvard. Developer of CHARMM (Molecular dynamics and mechanics simulations).
  
  

• Kollman Group at UCSF. Computational approachs for analysis of structure, energetics, and reaction of organic and bio- molecules. Developer of AMBER (simulations).
  
  

• Kuntz Group at UCSF. Best known for the development of DOCK (ligand docking).
  
  

• Axel Brunger's Research Group at Yale University. Experimental and computational structural biology. Developer of X-PLORE (Structure builder from crystallographic data)
  
  

• Jay Ponder Lab in Washington University at St. Louis. Computational chemistry and molecular modeling of proteins. Site has free software packages: TINKER (MD and MM),  PROPACK (protein inverse folding), SLEUTH (PDB database search for structural motifs), QSAR etc.
  
  

• Sali Lab at The Rockefeller University.  Protein structural homology (or comparative) modeling. Developer of MODELLER (homology modeling). A group member developed  GRAMM (protein docking).
  
  

• David Eisenberg's Lab at UCLA. Threading tools. Protein interactions studied by X-ray crystallography, and computational and biochemical methods.  The group develooped a Fold recognition server.
  
  

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